Wall clock time and date at job start Tue Mar 31 2020 16:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.40828 * 2 1 4 4 C 1.53251 * 109.40535 * 240.15323 * 2 1 3 5 5 H 1.08998 * 109.62960 * 58.17554 * 4 2 1 6 6 C 1.52997 * 109.63107 * 297.58694 * 4 2 1 7 7 S 1.81901 * 108.50389 * 177.88065 * 4 2 1 8 8 C 1.81900 * 101.91533 * 51.30701 * 7 4 2 9 9 C 1.53255 * 108.50425 * 308.69244 * 8 7 4 10 10 N 1.46473 * 109.40232 * 119.76135 * 2 1 3 11 11 C 1.46895 * 110.99980 * 317.88210 * 10 2 1 12 12 N 1.46502 * 109.47167 * 175.20542 * 11 10 2 13 13 N 1.40154 * 126.14814 * 90.02172 * 12 11 10 14 14 C 1.32238 * 107.76023 * 179.97438 * 13 12 11 15 15 C 1.40126 * 125.93014 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00060 * 180.02562 * 15 14 13 17 17 C 1.40039 * 119.99563 * 0.03054 * 15 14 13 18 18 N 1.30798 * 120.00344 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99920 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47236 * 89.99518 * 19 17 15 21 21 H 1.48498 * 109.47170 * 210.00251 * 19 17 15 22 22 H 1.48505 * 109.46820 * 329.99797 * 19 17 15 23 23 N 1.38501 * 108.14648 * 0.02562 * 14 13 12 24 24 C 1.46497 * 125.83368 * 179.97438 * 23 14 13 25 25 C 1.34728 * 108.32821 * 359.75375 * 23 14 13 26 26 S 1.71200 * 125.97162 * 180.24501 * 25 23 14 27 27 H 1.08996 * 109.47890 * 186.89617 * 1 2 3 28 28 H 1.09006 * 109.47042 * 306.90082 * 1 2 3 29 29 H 1.09008 * 109.47111 * 66.89824 * 1 2 3 30 30 H 1.08994 * 109.47378 * 60.00049 * 6 4 2 31 31 H 1.09003 * 109.47131 * 180.02562 * 6 4 2 32 32 H 1.09003 * 109.46965 * 299.99704 * 6 4 2 33 33 H 1.08996 * 109.63220 * 188.99038 * 8 7 4 34 34 H 1.09000 * 109.79404 * 68.49677 * 8 7 4 35 35 H 1.08994 * 109.40657 * 301.88963 * 9 8 7 36 36 H 1.09001 * 109.40568 * 182.11665 * 9 8 7 37 37 H 1.09006 * 109.47480 * 295.20399 * 11 10 2 38 38 H 1.09003 * 109.47532 * 55.20233 * 11 10 2 39 39 H 0.96998 * 120.00338 * 180.02562 * 18 17 15 40 40 H 1.09004 * 109.47400 * 90.00056 * 24 23 14 41 41 H 1.09005 * 109.47262 * 210.00143 * 24 23 14 42 42 H 1.09001 * 109.47804 * 329.99504 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8922 1.0280 0.0000 4 6 2.0392 -0.7194 -1.2537 5 1 1.6502 -0.2242 -2.1434 6 6 1.5805 -2.1788 -1.2309 7 16 3.8568 -0.6500 -1.2610 8 6 4.2628 -1.2663 0.4016 9 6 3.4475 -0.4716 1.4274 10 7 2.0166 -0.6858 1.1993 11 6 1.2320 -0.3016 2.3803 12 7 1.6701 -1.0894 3.5351 13 7 2.6835 -0.7398 4.4379 14 6 2.7759 -1.7071 5.3349 15 6 3.6698 -1.7458 6.4133 16 1 3.6630 -2.5871 7.0904 17 6 4.5719 -0.6934 6.6130 18 7 4.5805 0.3253 5.7926 19 14 5.7641 -0.7452 8.0501 20 1 7.0210 -1.4132 7.6268 21 1 6.0646 0.6396 8.4942 22 1 5.1542 -1.5034 9.1720 23 7 1.8367 -2.6760 5.0228 24 6 1.6069 -3.9181 5.7647 25 6 1.1674 -2.2786 3.9232 26 16 -0.0980 -3.1356 3.1516 27 1 -0.3635 -1.0201 0.1234 28 1 -0.3633 0.6171 0.8218 29 1 -0.3634 0.4032 -0.9453 30 1 0.4915 -2.2171 -1.2089 31 1 1.9444 -2.6880 -2.1233 32 1 1.9795 -2.6712 -0.3440 33 1 5.3269 -1.1284 0.5935 34 1 4.0117 -2.3244 0.4745 35 1 3.6753 0.5896 1.3274 36 1 3.7076 -0.8037 2.4325 37 1 1.3806 0.7585 2.5862 38 1 0.1751 -0.4903 2.1915 39 1 5.2056 1.0540 5.9307 40 1 0.8586 -3.7461 6.5384 41 1 1.2519 -4.6893 5.0810 42 1 2.5390 -4.2434 6.2266 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794627460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:38 Heat of formation + Delta-G solvation = 90.804741 kcal Electronic energy + Delta-G solvation = -25023.394084 eV Core-core repulsion = 21678.727859 eV Total energy + Delta-G solvation = -3344.666225 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.109 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -40.97593 -38.79635 -34.82210 -34.06687 -33.12630 -31.59457 -30.42573 -28.54743 -27.29708 -26.65086 -25.23531 -23.67267 -22.55128 -21.43849 -20.91331 -19.41979 -17.80835 -16.90657 -16.80076 -15.91041 -15.78063 -15.40419 -15.22923 -14.75732 -14.67969 -14.22109 -13.89010 -13.54463 -13.13886 -12.81565 -12.59653 -12.47674 -12.28267 -12.20891 -11.96189 -11.87660 -11.71520 -11.57211 -11.50081 -11.29288 -11.15461 -10.86451 -10.66045 -10.55899 -10.34134 -10.15378 -9.65411 -9.42293 -9.27256 -8.95017 -8.19220 -7.55897 -7.13586 -6.78873 -6.69171 -5.23119 1.93529 2.27314 2.54477 2.63394 2.71920 2.85944 2.89541 3.32010 3.44087 3.58358 3.90462 4.13679 4.67292 4.75905 4.96593 5.09281 5.17943 5.21020 5.37702 5.40707 5.46250 5.50777 5.54239 5.68282 5.78264 5.81312 5.92285 5.98886 6.03063 6.04864 6.10836 6.19979 6.32732 6.35167 6.50581 6.58670 6.72500 6.93653 7.06721 7.11650 7.54642 7.72133 8.15696 8.27038 9.06729 9.83588 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.013379 B = 0.004832 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.262949 B = 5793.813748 C = 7097.504864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.096 3.904 3 H 0.053 0.947 4 C -0.032 4.032 5 H 0.106 0.894 6 C -0.135 4.135 7 S -0.289 6.289 8 C -0.063 4.063 9 C 0.051 3.949 10 N -0.549 5.549 11 C 0.329 3.671 12 N -0.382 5.382 13 N -0.348 5.348 14 C 0.376 3.624 15 C -0.435 4.435 16 H 0.097 0.903 17 C 0.077 3.923 18 N -0.737 5.737 19 Si 0.928 3.072 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.259 1.259 23 N -0.517 5.517 24 C 0.100 3.900 25 C 0.481 3.519 26 S -0.702 6.702 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.112 0.888 37 H 0.062 0.938 38 H 0.119 0.881 39 H 0.286 0.714 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.141 1.005 -5.254 5.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.014 4.014 3 H 0.071 0.929 4 C -0.161 4.161 5 H 0.124 0.876 6 C -0.194 4.194 7 S -0.061 6.061 8 C -0.212 4.212 9 C -0.078 4.078 10 N -0.276 5.276 11 C 0.118 3.882 12 N -0.168 5.168 13 N -0.181 5.181 14 C 0.127 3.873 15 C -0.477 4.477 16 H 0.115 0.885 17 C -0.150 4.150 18 N -0.361 5.361 19 Si 0.751 3.249 20 H -0.190 1.190 21 H -0.198 1.198 22 H -0.183 1.183 23 N -0.218 5.218 24 C -0.043 4.043 25 C 0.113 3.887 26 S -0.578 6.578 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.120 0.880 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.130 0.870 37 H 0.080 0.920 38 H 0.137 0.863 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.522 1.549 -7.048 7.236 hybrid contribution 0.409 0.234 2.332 2.379 sum 0.931 1.783 -4.716 5.127 Atomic orbital electron populations 1.22111 0.93337 1.04124 1.01888 1.21657 0.95923 0.95083 0.88753 0.92881 1.23243 0.92118 1.00799 0.99936 0.87575 1.21916 1.01643 0.93075 1.02718 1.86665 1.08853 1.87029 1.23579 1.23464 1.02615 1.03005 0.92100 1.22347 0.86265 0.98234 1.00953 1.61075 1.03602 1.60193 1.02760 1.21797 0.97422 0.91509 0.77445 1.49112 1.29504 1.15095 1.23084 1.79302 1.11766 1.21092 1.05895 1.21266 0.88506 0.82393 0.95089 1.18378 1.14389 1.06867 1.08042 0.88461 1.25830 0.97394 0.93966 0.97761 1.69855 1.29259 1.05313 1.31712 0.85966 0.79846 0.78884 0.80216 1.19037 1.19782 1.18255 1.45978 1.31398 1.20499 1.23974 1.21752 1.02391 0.83845 0.96276 1.22905 0.91795 0.87533 0.86509 1.92717 1.30460 1.65372 1.69214 0.89900 0.92198 0.91839 0.91626 0.92807 0.90703 0.87983 0.89352 0.93713 0.87041 0.92038 0.86335 0.90313 0.91529 0.89186 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 7.52 37.16 0.28 -1.60 16 2 C 0.10 1.31 2.18 -67.82 -0.15 1.17 16 3 H 0.05 0.73 7.91 -51.93 -0.41 0.32 16 4 C -0.03 -0.42 2.98 -26.60 -0.08 -0.50 16 5 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 6 C -0.13 -1.84 8.68 37.16 0.32 -1.52 16 7 S -0.29 -4.22 21.80 -107.50 -2.34 -6.57 16 8 C -0.06 -0.99 6.33 37.29 0.24 -0.76 16 9 C 0.05 0.89 5.35 -3.92 -0.02 0.87 16 10 N -0.55 -9.10 3.66 -230.91 -0.85 -9.95 16 11 C 0.33 6.04 5.21 -63.32 -0.33 5.71 16 12 N -0.38 -8.35 3.15 -65.05 -0.21 -8.55 16 13 N -0.35 -8.32 9.20 31.21 0.29 -8.04 16 14 C 0.38 8.82 7.50 -155.27 -1.16 7.65 16 15 C -0.44 -9.69 8.98 -38.20 -0.34 -10.04 16 16 H 0.10 1.96 7.11 -52.49 -0.37 1.58 16 17 C 0.08 1.66 5.50 -17.32 -0.10 1.57 16 18 N -0.74 -16.95 11.90 55.55 0.66 -16.28 16 19 Si 0.93 16.02 29.56 -169.99 -5.02 10.99 16 20 H -0.27 -4.57 7.11 56.52 0.40 -4.17 16 21 H -0.27 -4.71 7.11 56.52 0.40 -4.31 16 22 H -0.26 -4.37 7.11 56.52 0.40 -3.97 16 23 N -0.52 -11.26 3.17 -124.65 -0.39 -11.66 16 24 C 0.10 1.73 10.64 59.85 0.64 2.37 16 25 C 0.48 10.96 7.84 -86.93 -0.68 10.28 16 26 S -0.70 -16.53 29.50 -107.50 -3.17 -19.70 16 27 H 0.08 1.15 6.82 -51.93 -0.35 0.80 16 28 H 0.06 0.71 6.72 -51.93 -0.35 0.36 16 29 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 30 H 0.06 0.86 6.67 -51.93 -0.35 0.51 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.25 6.68 -51.93 -0.35 0.90 16 33 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 34 H 0.09 1.48 7.55 -51.93 -0.39 1.09 16 35 H 0.04 0.78 7.91 -51.93 -0.41 0.37 16 36 H 0.11 2.36 5.69 -51.93 -0.30 2.06 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.12 2.14 5.49 -51.93 -0.29 1.86 16 39 H 0.29 5.99 8.30 -40.82 -0.34 5.65 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.09 1.55 7.62 -51.93 -0.40 1.15 16 42 H 0.08 1.27 7.32 -51.93 -0.38 0.89 16 LS Contribution 352.60 15.07 5.31 5.31 Total: -1.00 -27.38 352.60 -13.12 -40.50 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -6.01 Total: 8.74 kcal Atomic # 6 Polarization: 16.59 SS G_CDS: -1.39 Total: 15.20 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.50 Total: -54.48 kcal Atomic # 14 Polarization: 16.02 SS G_CDS: -5.02 Total: 10.99 kcal Atomic # 16 Polarization: -20.75 SS G_CDS: -5.51 Total: -26.27 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.38 -13.12 -40.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794627460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.301 kcal (2) G-P(sol) polarization free energy of solvation -27.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds