Wall clock time and date at job start Tue Mar 31 2020 16:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.40828 * 2 1 4 4 C 1.53251 * 109.40535 * 240.15323 * 2 1 3 5 5 H 1.08998 * 109.62960 * 58.17554 * 4 2 1 6 6 C 1.52997 * 109.63107 * 297.58694 * 4 2 1 7 7 S 1.81901 * 108.50389 * 177.88065 * 4 2 1 8 8 C 1.81900 * 101.91533 * 51.30701 * 7 4 2 9 9 C 1.53255 * 108.50425 * 308.69244 * 8 7 4 10 10 N 1.46473 * 109.40232 * 119.76135 * 2 1 3 11 11 C 1.46895 * 110.99980 * 317.88210 * 10 2 1 12 12 N 1.46502 * 109.47167 * 175.20542 * 11 10 2 13 13 N 1.40154 * 126.14814 * 90.02172 * 12 11 10 14 14 C 1.32238 * 107.76023 * 179.97438 * 13 12 11 15 15 C 1.40126 * 125.93014 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00060 * 180.02562 * 15 14 13 17 17 C 1.40039 * 119.99563 * 0.03054 * 15 14 13 18 18 N 1.30798 * 120.00344 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99920 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47236 * 89.99518 * 19 17 15 21 21 H 1.48498 * 109.47170 * 210.00251 * 19 17 15 22 22 H 1.48505 * 109.46820 * 329.99797 * 19 17 15 23 23 N 1.38501 * 108.14648 * 0.02562 * 14 13 12 24 24 C 1.46497 * 125.83368 * 179.97438 * 23 14 13 25 25 C 1.34728 * 108.32821 * 359.75375 * 23 14 13 26 26 S 1.71200 * 125.97162 * 180.24501 * 25 23 14 27 27 H 1.08996 * 109.47890 * 186.89617 * 1 2 3 28 28 H 1.09006 * 109.47042 * 306.90082 * 1 2 3 29 29 H 1.09008 * 109.47111 * 66.89824 * 1 2 3 30 30 H 1.08994 * 109.47378 * 60.00049 * 6 4 2 31 31 H 1.09003 * 109.47131 * 180.02562 * 6 4 2 32 32 H 1.09003 * 109.46965 * 299.99704 * 6 4 2 33 33 H 1.08996 * 109.63220 * 188.99038 * 8 7 4 34 34 H 1.09000 * 109.79404 * 68.49677 * 8 7 4 35 35 H 1.08994 * 109.40657 * 301.88963 * 9 8 7 36 36 H 1.09001 * 109.40568 * 182.11665 * 9 8 7 37 37 H 1.09006 * 109.47480 * 295.20399 * 11 10 2 38 38 H 1.09003 * 109.47532 * 55.20233 * 11 10 2 39 39 H 0.96998 * 120.00338 * 180.02562 * 18 17 15 40 40 H 1.09004 * 109.47400 * 90.00056 * 24 23 14 41 41 H 1.09005 * 109.47262 * 210.00143 * 24 23 14 42 42 H 1.09001 * 109.47804 * 329.99504 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8922 1.0280 0.0000 4 6 2.0392 -0.7194 -1.2537 5 1 1.6502 -0.2242 -2.1434 6 6 1.5805 -2.1788 -1.2309 7 16 3.8568 -0.6500 -1.2610 8 6 4.2628 -1.2663 0.4016 9 6 3.4475 -0.4716 1.4274 10 7 2.0166 -0.6858 1.1993 11 6 1.2320 -0.3016 2.3803 12 7 1.6701 -1.0894 3.5351 13 7 2.6835 -0.7398 4.4379 14 6 2.7759 -1.7071 5.3349 15 6 3.6698 -1.7458 6.4133 16 1 3.6630 -2.5871 7.0904 17 6 4.5719 -0.6934 6.6130 18 7 4.5805 0.3253 5.7926 19 14 5.7641 -0.7452 8.0501 20 1 7.0210 -1.4132 7.6268 21 1 6.0646 0.6396 8.4942 22 1 5.1542 -1.5034 9.1720 23 7 1.8367 -2.6760 5.0228 24 6 1.6069 -3.9181 5.7647 25 6 1.1674 -2.2786 3.9232 26 16 -0.0980 -3.1356 3.1516 27 1 -0.3635 -1.0201 0.1234 28 1 -0.3633 0.6171 0.8218 29 1 -0.3634 0.4032 -0.9453 30 1 0.4915 -2.2171 -1.2089 31 1 1.9444 -2.6880 -2.1233 32 1 1.9795 -2.6712 -0.3440 33 1 5.3269 -1.1284 0.5935 34 1 4.0117 -2.3244 0.4745 35 1 3.6753 0.5896 1.3274 36 1 3.7076 -0.8037 2.4325 37 1 1.3806 0.7585 2.5862 38 1 0.1751 -0.4903 2.1915 39 1 5.2056 1.0540 5.9307 40 1 0.8586 -3.7461 6.5384 41 1 1.2519 -4.6893 5.0810 42 1 2.5390 -4.2434 6.2266 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794627460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:36 Heat of formation + Delta-G solvation = 78.694718 kcal Electronic energy + Delta-G solvation = -25023.919214 eV Core-core repulsion = 21678.727859 eV Total energy + Delta-G solvation = -3345.191355 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.66885 -40.09724 -36.35735 -35.69735 -34.45574 -33.05574 -31.95207 -29.85086 -28.69892 -28.28302 -26.58002 -25.02158 -23.95005 -23.02881 -22.58482 -20.63828 -19.46132 -18.50271 -18.10682 -17.43756 -17.24938 -16.85575 -16.71414 -16.33775 -15.96736 -15.57357 -15.30354 -14.99067 -14.44465 -14.03430 -13.84772 -13.84052 -13.72051 -13.45985 -13.42274 -13.29899 -13.06504 -12.90381 -12.70021 -12.58671 -12.48059 -12.41723 -12.03821 -11.98257 -11.75070 -11.57752 -11.36528 -10.89180 -10.72760 -10.58138 -9.53491 -8.80263 -8.75483 -8.61500 -8.51612 -6.97606 0.53856 0.75904 0.84046 1.26584 1.43494 1.44319 1.58863 1.66804 1.84386 2.11639 2.39833 2.65941 3.08349 3.48958 3.65781 3.71336 3.96934 4.00790 4.04282 4.07002 4.14646 4.25550 4.34413 4.45537 4.46381 4.53285 4.70278 4.74066 4.78747 4.80787 4.88357 4.91195 4.93070 5.00635 5.08770 5.27557 5.28801 5.42234 5.66601 5.68690 5.94764 6.15896 6.47791 6.56438 7.32546 8.22240 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.013379 B = 0.004832 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.262949 B = 5793.813748 C = 7097.504864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.094 3.906 3 H 0.058 0.942 4 C -0.027 4.027 5 H 0.136 0.864 6 C -0.126 4.126 7 S -0.283 6.283 8 C -0.059 4.059 9 C 0.063 3.937 10 N -0.551 5.551 11 C 0.329 3.671 12 N -0.377 5.377 13 N -0.371 5.371 14 C 0.355 3.645 15 C -0.449 4.449 16 H 0.117 0.883 17 C 0.039 3.961 18 N -0.773 5.773 19 Si 1.002 2.998 20 H -0.263 1.263 21 H -0.273 1.273 22 H -0.248 1.248 23 N -0.518 5.518 24 C 0.096 3.904 25 C 0.468 3.532 26 S -0.728 6.728 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.040 0.960 33 H 0.108 0.892 34 H 0.073 0.927 35 H 0.041 0.959 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.122 0.878 39 H 0.291 0.709 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.504 1.266 -5.355 5.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 H 0.076 0.924 4 C -0.155 4.155 5 H 0.154 0.846 6 C -0.185 4.185 7 S -0.055 6.055 8 C -0.208 4.208 9 C -0.067 4.067 10 N -0.278 5.278 11 C 0.118 3.882 12 N -0.163 5.163 13 N -0.204 5.204 14 C 0.106 3.894 15 C -0.491 4.491 16 H 0.135 0.865 17 C -0.185 4.185 18 N -0.398 5.398 19 Si 0.822 3.178 20 H -0.187 1.187 21 H -0.198 1.198 22 H -0.171 1.171 23 N -0.219 5.219 24 C -0.046 4.046 25 C 0.098 3.902 26 S -0.605 6.605 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.126 0.874 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.140 0.860 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.869 1.798 -7.166 7.439 hybrid contribution 0.297 0.189 2.324 2.350 sum 1.166 1.987 -4.842 5.362 Atomic orbital electron populations 1.22063 0.91793 1.03226 1.03682 1.21814 0.97113 0.95029 0.87551 0.92382 1.23362 0.90898 1.00627 1.00654 0.84582 1.21807 1.01907 0.93227 1.01553 1.86636 1.10341 1.86708 1.21822 1.23309 1.02715 1.01816 0.92928 1.22122 0.87142 0.97959 0.99473 1.61094 1.02924 1.60805 1.03027 1.21928 0.97745 0.91127 0.77387 1.49402 1.28638 1.14920 1.23372 1.79247 1.12514 1.21997 1.06600 1.21652 0.89237 0.82889 0.95584 1.18892 1.14290 1.07871 1.08014 0.86534 1.26803 0.98539 0.93084 1.00043 1.69946 1.30211 1.06143 1.33454 0.84862 0.77295 0.78814 0.76868 1.18733 1.19766 1.17091 1.46245 1.30658 1.21270 1.23751 1.22013 1.04042 0.82253 0.96280 1.22902 0.92133 0.87972 0.87193 1.92633 1.31662 1.66081 1.70083 0.91686 0.92169 0.88695 0.90930 0.91692 0.94079 0.87390 0.90812 0.94080 0.90824 0.92002 0.86018 0.89815 0.90074 0.89346 0.87637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 7.52 71.98 0.54 -2.80 16 2 C 0.09 2.46 2.18 45.08 0.10 2.56 16 3 H 0.06 1.50 7.91 -2.39 -0.02 1.48 16 4 C -0.03 -0.65 2.98 30.68 0.09 -0.55 16 5 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16 6 C -0.13 -3.30 8.68 71.98 0.62 -2.67 16 7 S -0.28 -7.91 21.80 -56.49 -1.23 -9.14 16 8 C -0.06 -1.88 6.33 72.07 0.46 -1.42 16 9 C 0.06 2.24 5.35 86.47 0.46 2.71 16 10 N -0.55 -18.47 3.66 -884.47 -3.24 -21.71 16 11 C 0.33 12.28 5.21 170.81 0.89 13.17 16 12 N -0.38 -16.93 3.15 -359.71 -1.13 -18.06 16 13 N -0.37 -18.18 9.20 -55.16 -0.51 -18.68 16 14 C 0.35 16.81 7.50 133.52 1.00 17.81 16 15 C -0.45 -19.81 8.98 23.17 0.21 -19.60 16 16 H 0.12 4.51 7.11 -2.91 -0.02 4.49 16 17 C 0.04 1.64 5.50 85.28 0.47 2.11 16 18 N -0.77 -35.85 11.90 21.84 0.26 -35.59 16 19 Si 1.00 31.73 29.56 68.60 2.03 33.76 16 20 H -0.26 -8.16 7.11 99.48 0.71 -7.45 16 21 H -0.27 -8.57 7.11 99.48 0.71 -7.86 16 22 H -0.25 -7.36 7.11 99.48 0.71 -6.65 16 23 N -0.52 -22.74 3.17 -548.29 -1.74 -24.48 16 24 C 0.10 3.24 10.64 127.77 1.36 4.60 16 25 C 0.47 21.72 7.84 179.06 1.40 23.12 16 26 S -0.73 -34.67 29.50 -56.49 -1.67 -36.34 16 27 H 0.06 1.73 6.82 -2.39 -0.02 1.72 16 28 H 0.06 1.35 6.72 -2.38 -0.02 1.33 16 29 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.07 1.80 6.67 -2.39 -0.02 1.78 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.04 1.36 6.68 -2.39 -0.02 1.34 16 33 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 34 H 0.07 2.55 7.55 -2.39 -0.02 2.54 16 35 H 0.04 1.47 7.91 -2.39 -0.02 1.45 16 36 H 0.07 3.25 5.69 -2.39 -0.01 3.24 16 37 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 38 H 0.12 4.46 5.49 -2.39 -0.01 4.44 16 39 H 0.29 12.29 8.30 -92.71 -0.77 11.52 16 40 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 41 H 0.09 3.02 7.62 -2.38 -0.02 3.00 16 42 H 0.11 3.06 7.32 -2.39 -0.02 3.04 16 Total: -1.00 -59.64 352.60 1.41 -58.23 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: 1.03 Total: 32.99 kcal Atomic # 6 Polarization: 31.43 SS G_CDS: 7.60 Total: 39.03 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -6.36 Total: -118.53 kcal Atomic # 14 Polarization: 31.73 SS G_CDS: 2.03 Total: 33.76 kcal Atomic # 16 Polarization: -42.58 SS G_CDS: -2.90 Total: -45.48 kcal Total: -59.64 1.41 -58.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794627460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.920 kcal (2) G-P(sol) polarization free energy of solvation -59.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds