Wall clock time and date at job start Tue Mar 31 2020 14:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.38503 * 125.83460 * 2 1 4 4 C 1.40125 * 125.92300 * 359.96996 * 3 2 1 5 5 H 1.07997 * 120.00066 * 5.64116 * 4 3 2 6 6 C 1.40040 * 119.99647 * 185.63629 * 4 3 2 7 7 N 1.30795 * 119.99919 * 353.91965 * 6 4 3 8 8 Si 1.86799 * 119.99829 * 174.19052 * 6 4 3 9 9 H 1.48504 * 109.47179 * 274.73697 * 8 6 4 10 10 H 1.48493 * 109.47084 * 34.73825 * 8 6 4 11 11 H 1.48504 * 109.47037 * 154.74005 * 8 6 4 12 12 N 1.32231 * 108.14956 * 180.22608 * 3 2 1 13 13 N 1.40170 * 107.75817 * 359.59548 * 12 3 2 14 14 C 1.46501 * 126.14907 * 180.15754 * 13 12 3 15 15 N 1.46898 * 109.47229 * 270.29704 * 14 13 12 16 16 C 1.46464 * 110.99961 * 44.01919 * 15 14 13 17 17 C 1.53250 * 109.85606 * 197.76619 * 16 15 14 18 18 S 1.81900 * 108.50796 * 297.99602 * 17 16 15 19 19 C 1.81898 * 101.91298 * 51.30559 * 18 17 16 20 20 C 1.52999 * 109.63244 * 188.99282 * 19 18 17 21 21 C 1.52996 * 109.63207 * 68.39990 * 19 18 17 22 22 C 1.46466 * 110.99551 * 169.99995 * 15 14 13 23 23 C 1.34728 * 125.83824 * 179.97438 * 2 1 3 24 24 S 1.71198 * 125.96770 * 0.05178 * 23 2 1 25 25 H 1.09003 * 109.47012 * 89.99878 * 1 2 3 26 26 H 1.08995 * 109.47095 * 209.99405 * 1 2 3 27 27 H 1.08997 * 109.46788 * 329.99828 * 1 2 3 28 28 H 0.97006 * 120.00246 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.46616 * 30.29555 * 14 13 12 30 30 H 1.09001 * 109.47096 * 150.29355 * 14 13 12 31 31 H 1.08999 * 109.40874 * 317.87852 * 16 15 14 32 32 H 1.08993 * 109.40924 * 77.64782 * 16 15 14 33 33 H 1.09001 * 109.63248 * 178.28949 * 17 16 15 34 34 H 1.09001 * 109.63329 * 57.69978 * 17 16 15 35 35 H 1.08997 * 109.47138 * 179.01137 * 20 19 18 36 36 H 1.09000 * 109.47089 * 299.01284 * 20 19 18 37 37 H 1.09006 * 109.47393 * 59.01593 * 20 19 18 38 38 H 1.08998 * 109.47339 * 300.99308 * 21 19 18 39 39 H 1.09006 * 109.46633 * 60.99068 * 21 19 18 40 40 H 1.08995 * 109.47411 * 180.98329 * 21 19 18 41 41 H 1.08998 * 109.40610 * 282.34934 * 22 15 14 42 42 H 1.08995 * 109.40814 * 42.19523 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2759 1.1229 0.0000 4 6 1.8373 2.4537 -0.0006 5 1 0.7842 2.6752 0.0908 6 6 2.7645 3.4964 -0.1196 7 7 4.0462 3.2360 -0.1105 8 14 2.1707 5.2599 -0.2838 9 1 1.8799 5.5536 -1.7102 10 1 0.9364 5.4436 0.5210 11 1 3.2240 6.1845 0.2071 12 7 3.5357 0.7212 -0.0050 13 7 3.5376 -0.6805 0.0012 14 6 4.7216 -1.5432 0.0020 15 7 5.1181 -1.8318 -1.3828 16 6 5.0701 -0.6212 -2.2057 17 6 5.0480 -1.0013 -3.6901 18 16 6.5859 -1.8904 -4.0814 19 6 6.6198 -3.1692 -2.7882 20 6 7.9685 -3.8911 -2.8144 21 6 5.4902 -4.1728 -3.0279 22 6 6.4255 -2.4905 -1.4279 23 6 2.2539 -1.0922 0.0005 24 16 1.7194 -2.7186 0.0000 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5139 28 1 4.6885 3.9582 -0.1934 29 1 5.5391 -1.0376 0.5161 30 1 4.4910 -2.4763 0.5160 31 1 4.1712 -0.0541 -1.9637 32 1 5.9487 -0.0094 -2.0016 33 1 4.9817 -0.0992 -4.2983 34 1 4.1917 -1.6453 -3.8906 35 1 7.9925 -4.6447 -2.0273 36 1 8.1040 -4.3728 -3.7828 37 1 8.7698 -3.1703 -2.6518 38 1 4.5328 -3.6518 -3.0170 39 1 5.6310 -4.6538 -3.9959 40 1 5.5020 -4.9278 -2.2419 41 1 7.2100 -1.7489 -1.2778 42 1 6.4805 -3.2407 -0.6391 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794632680.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:16 Heat of formation + Delta-G solvation = 90.043872 kcal Electronic energy + Delta-G solvation = -24798.401904 eV Core-core repulsion = 21453.702685 eV Total energy + Delta-G solvation = -3344.699219 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.109 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.03888 -38.42676 -35.26102 -34.16982 -33.59713 -31.32283 -30.24079 -27.94004 -27.25248 -26.67430 -25.67333 -24.19105 -22.23537 -21.10442 -20.77667 -20.20197 -17.80844 -16.83831 -16.75694 -15.81849 -15.78697 -15.26600 -14.95987 -14.73363 -14.67488 -14.30208 -13.95797 -13.69225 -13.52016 -13.11279 -12.47385 -12.35144 -12.30283 -12.01794 -11.98559 -11.89965 -11.76903 -11.73160 -11.58336 -11.16461 -11.14052 -11.00946 -10.69828 -10.57950 -10.40384 -10.16093 -9.66704 -9.46480 -9.28172 -8.97791 -8.16377 -7.52618 -7.15437 -6.78248 -6.73702 -5.25492 1.90915 2.23540 2.50481 2.66084 2.71487 2.85048 2.88425 3.29543 3.41603 3.57369 3.90616 4.09948 4.68344 4.72964 4.92879 5.03956 5.13824 5.22062 5.42611 5.44302 5.49201 5.54274 5.62047 5.62780 5.71774 5.79595 5.81486 5.94315 5.99556 6.02917 6.07694 6.10335 6.24672 6.33395 6.46432 6.54674 6.70828 6.90958 7.03683 7.07611 7.51548 7.69200 8.13131 8.24723 9.03251 9.81706 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.013466 B = 0.004636 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.741496 B = 6037.623861 C = 7416.672327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.518 5.518 3 C 0.376 3.624 4 C -0.436 4.436 5 H 0.098 0.902 6 C 0.077 3.923 7 N -0.736 5.736 8 Si 0.928 3.072 9 H -0.264 1.264 10 H -0.259 1.259 11 H -0.273 1.273 12 N -0.348 5.348 13 N -0.387 5.387 14 C 0.335 3.665 15 N -0.553 5.553 16 C 0.056 3.944 17 C -0.066 4.066 18 S -0.280 6.280 19 C -0.012 4.012 20 C -0.127 4.127 21 C -0.129 4.129 22 C 0.071 3.929 23 C 0.481 3.519 24 S -0.698 6.698 25 H 0.067 0.933 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.286 0.714 29 H 0.063 0.937 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.048 0.952 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.048 0.952 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.308 -2.829 -3.115 6.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.219 5.219 3 C 0.127 3.873 4 C -0.477 4.477 5 H 0.116 0.884 6 C -0.149 4.149 7 N -0.360 5.360 8 Si 0.751 3.249 9 H -0.189 1.189 10 H -0.183 1.183 11 H -0.198 1.198 12 N -0.180 5.180 13 N -0.173 5.173 14 C 0.124 3.876 15 N -0.280 5.280 16 C -0.073 4.073 17 C -0.214 4.214 18 S -0.053 6.053 19 C -0.122 4.122 20 C -0.186 4.186 21 C -0.188 4.188 22 C -0.059 4.059 23 C 0.113 3.887 24 S -0.574 6.574 25 H 0.086 0.914 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.066 0.934 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.695 -3.538 -4.132 7.875 hybrid contribution -1.019 1.857 1.093 2.383 sum 4.676 -1.681 -3.039 5.825 Atomic orbital electron populations 1.21761 0.75321 1.04140 1.03056 1.46012 1.08286 1.04986 1.62589 1.21279 0.84087 0.88532 0.93359 1.18378 0.95949 0.85627 1.47775 0.88401 1.25835 0.94280 1.01939 0.92893 1.69862 1.01747 1.35370 1.28994 0.85976 0.79662 0.79412 0.79850 1.18930 1.18285 1.19809 1.79379 1.14056 0.82122 1.42448 1.49098 1.03440 1.07110 1.57647 1.21725 0.83491 0.92970 0.89406 1.61314 1.28479 1.27537 1.10632 1.22261 1.04120 0.90538 0.90398 1.23494 0.96642 1.02008 0.99290 1.86649 1.34252 1.39321 1.45096 1.22707 0.99454 0.95778 0.94266 1.21648 0.94158 1.00030 1.02726 1.21924 0.98096 0.97703 1.01046 1.22174 0.89154 0.98115 0.96461 1.22944 0.84764 0.92471 0.88568 1.92771 1.84930 0.98970 1.80680 0.91418 0.89173 0.89816 0.90254 0.91875 0.86933 0.87793 0.93409 0.88051 0.89348 0.91105 0.91658 0.91880 0.90643 0.92670 0.92082 0.93367 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.72 10.66 59.85 0.64 2.36 16 2 N -0.52 -11.23 3.17 -124.66 -0.39 -11.62 16 3 C 0.38 8.78 7.50 -155.27 -1.16 7.62 16 4 C -0.44 -9.69 8.99 -38.20 -0.34 -10.03 16 5 H 0.10 1.96 7.08 -52.49 -0.37 1.59 16 6 C 0.08 1.67 5.49 -17.32 -0.10 1.57 16 7 N -0.74 -16.95 11.92 55.55 0.66 -16.28 16 8 Si 0.93 16.00 29.56 -169.99 -5.03 10.98 16 9 H -0.26 -4.56 7.11 56.52 0.40 -4.16 16 10 H -0.26 -4.36 7.11 56.52 0.40 -3.95 16 11 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16 12 N -0.35 -8.30 9.23 31.21 0.29 -8.01 16 13 N -0.39 -8.45 2.62 -65.05 -0.17 -8.62 16 14 C 0.34 6.17 6.15 -63.32 -0.39 5.78 16 15 N -0.55 -9.32 3.80 -238.95 -0.91 -10.23 16 16 C 0.06 1.02 5.18 -3.93 -0.02 1.00 16 17 C -0.07 -1.06 6.33 37.29 0.24 -0.83 16 18 S -0.28 -4.16 21.18 -107.50 -2.28 -6.44 16 19 C -0.01 -0.15 0.89 -90.49 -0.08 -0.23 16 20 C -0.13 -1.32 8.53 37.16 0.32 -1.00 16 21 C -0.13 -1.74 8.27 37.16 0.31 -1.43 16 22 C 0.07 0.98 4.15 -3.93 -0.02 0.96 16 23 C 0.48 10.96 7.84 -86.93 -0.68 10.27 16 24 S -0.70 -16.64 29.50 -107.50 -3.17 -19.81 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.09 1.54 7.61 -51.93 -0.40 1.14 16 27 H 0.08 1.26 7.27 -51.93 -0.38 0.88 16 28 H 0.29 6.02 8.30 -40.82 -0.34 5.68 16 29 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 30 H 0.11 2.05 7.65 -51.93 -0.40 1.66 16 31 H 0.10 2.27 5.35 -51.93 -0.28 1.99 16 32 H 0.05 0.91 7.91 -51.93 -0.41 0.49 16 33 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.09 1.50 7.54 -51.93 -0.39 1.11 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 1.24 6.67 -51.93 -0.35 0.89 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.05 0.68 7.91 -51.93 -0.41 0.27 16 42 H 0.08 1.04 7.96 -51.93 -0.41 0.63 16 LS Contribution 358.61 15.07 5.40 5.40 Total: -1.00 -27.70 358.61 -13.19 -40.89 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.31 Total: 7.69 kcal Atomic # 6 Polarization: 17.34 SS G_CDS: -1.29 Total: 16.04 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.52 Total: -54.76 kcal Atomic # 14 Polarization: 16.00 SS G_CDS: -5.03 Total: 10.98 kcal Atomic # 16 Polarization: -20.80 SS G_CDS: -5.45 Total: -26.24 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.70 -13.19 -40.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794632680.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.936 kcal (2) G-P(sol) polarization free energy of solvation -27.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds