Wall clock time and date at job start Tue Mar 31 2020 14:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.38503 * 125.83460 * 2 1 4 4 C 1.40125 * 125.92300 * 359.96996 * 3 2 1 5 5 H 1.07997 * 120.00066 * 5.64116 * 4 3 2 6 6 C 1.40040 * 119.99647 * 185.63629 * 4 3 2 7 7 N 1.30795 * 119.99919 * 353.91965 * 6 4 3 8 8 Si 1.86799 * 119.99829 * 174.19052 * 6 4 3 9 9 H 1.48504 * 109.47179 * 274.73697 * 8 6 4 10 10 H 1.48493 * 109.47084 * 34.73825 * 8 6 4 11 11 H 1.48504 * 109.47037 * 154.74005 * 8 6 4 12 12 N 1.32231 * 108.14956 * 180.22608 * 3 2 1 13 13 N 1.40170 * 107.75817 * 359.59548 * 12 3 2 14 14 C 1.46501 * 126.14907 * 180.15754 * 13 12 3 15 15 N 1.46898 * 109.47229 * 270.29704 * 14 13 12 16 16 C 1.46464 * 110.99961 * 44.01919 * 15 14 13 17 17 C 1.53250 * 109.85606 * 197.76619 * 16 15 14 18 18 S 1.81900 * 108.50796 * 297.99602 * 17 16 15 19 19 C 1.81898 * 101.91298 * 51.30559 * 18 17 16 20 20 C 1.52999 * 109.63244 * 188.99282 * 19 18 17 21 21 C 1.52996 * 109.63207 * 68.39990 * 19 18 17 22 22 C 1.46466 * 110.99551 * 169.99995 * 15 14 13 23 23 C 1.34728 * 125.83824 * 179.97438 * 2 1 3 24 24 S 1.71198 * 125.96770 * 0.05178 * 23 2 1 25 25 H 1.09003 * 109.47012 * 89.99878 * 1 2 3 26 26 H 1.08995 * 109.47095 * 209.99405 * 1 2 3 27 27 H 1.08997 * 109.46788 * 329.99828 * 1 2 3 28 28 H 0.97006 * 120.00246 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.46616 * 30.29555 * 14 13 12 30 30 H 1.09001 * 109.47096 * 150.29355 * 14 13 12 31 31 H 1.08999 * 109.40874 * 317.87852 * 16 15 14 32 32 H 1.08993 * 109.40924 * 77.64782 * 16 15 14 33 33 H 1.09001 * 109.63248 * 178.28949 * 17 16 15 34 34 H 1.09001 * 109.63329 * 57.69978 * 17 16 15 35 35 H 1.08997 * 109.47138 * 179.01137 * 20 19 18 36 36 H 1.09000 * 109.47089 * 299.01284 * 20 19 18 37 37 H 1.09006 * 109.47393 * 59.01593 * 20 19 18 38 38 H 1.08998 * 109.47339 * 300.99308 * 21 19 18 39 39 H 1.09006 * 109.46633 * 60.99068 * 21 19 18 40 40 H 1.08995 * 109.47411 * 180.98329 * 21 19 18 41 41 H 1.08998 * 109.40610 * 282.34934 * 22 15 14 42 42 H 1.08995 * 109.40814 * 42.19523 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2759 1.1229 0.0000 4 6 1.8373 2.4537 -0.0006 5 1 0.7842 2.6752 0.0908 6 6 2.7645 3.4964 -0.1196 7 7 4.0462 3.2360 -0.1105 8 14 2.1707 5.2599 -0.2838 9 1 1.8799 5.5536 -1.7102 10 1 0.9364 5.4436 0.5210 11 1 3.2240 6.1845 0.2071 12 7 3.5357 0.7212 -0.0050 13 7 3.5376 -0.6805 0.0012 14 6 4.7216 -1.5432 0.0020 15 7 5.1181 -1.8318 -1.3828 16 6 5.0701 -0.6212 -2.2057 17 6 5.0480 -1.0013 -3.6901 18 16 6.5859 -1.8904 -4.0814 19 6 6.6198 -3.1692 -2.7882 20 6 7.9685 -3.8911 -2.8144 21 6 5.4902 -4.1728 -3.0279 22 6 6.4255 -2.4905 -1.4279 23 6 2.2539 -1.0922 0.0005 24 16 1.7194 -2.7186 0.0000 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5139 28 1 4.6885 3.9582 -0.1934 29 1 5.5391 -1.0376 0.5161 30 1 4.4910 -2.4763 0.5160 31 1 4.1712 -0.0541 -1.9637 32 1 5.9487 -0.0094 -2.0016 33 1 4.9817 -0.0992 -4.2983 34 1 4.1917 -1.6453 -3.8906 35 1 7.9925 -4.6447 -2.0273 36 1 8.1040 -4.3728 -3.7828 37 1 8.7698 -3.1703 -2.6518 38 1 4.5328 -3.6518 -3.0170 39 1 5.6310 -4.6538 -3.9959 40 1 5.5020 -4.9278 -2.2419 41 1 7.2100 -1.7489 -1.2778 42 1 6.4805 -3.2407 -0.6391 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794632680.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:14 Heat of formation + Delta-G solvation = 78.011561 kcal Electronic energy + Delta-G solvation = -24798.923664 eV Core-core repulsion = 21453.702685 eV Total energy + Delta-G solvation = -3345.220979 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.109 amu Computer time = 2.89 seconds Orbital eigenvalues (eV) -42.73739 -39.75628 -36.63197 -35.78863 -35.03179 -32.89206 -31.77546 -29.42124 -28.34306 -28.21163 -26.99814 -25.66042 -23.79369 -22.74832 -22.27769 -21.37695 -19.47209 -18.45903 -18.12623 -17.45968 -17.22834 -16.72727 -16.52170 -16.21629 -15.92554 -15.57392 -15.35540 -15.01155 -14.78877 -14.39878 -13.88288 -13.79369 -13.61249 -13.48212 -13.35210 -13.09395 -13.04630 -12.97596 -12.84754 -12.70850 -12.44061 -12.26104 -12.09523 -12.02153 -11.76713 -11.65106 -11.41071 -10.91574 -10.73109 -10.62452 -9.54432 -8.82575 -8.74571 -8.63025 -8.57349 -7.00001 0.49352 0.72940 0.79426 1.25578 1.43580 1.44389 1.58030 1.62675 1.82843 2.10366 2.37858 2.62534 3.05732 3.49921 3.66481 3.71882 3.95136 3.99261 4.00489 4.04263 4.15255 4.25695 4.41492 4.44286 4.51405 4.54974 4.69222 4.75890 4.77473 4.79121 4.86548 4.89480 4.91619 4.98326 5.07121 5.20418 5.25138 5.41043 5.57737 5.64623 5.90760 6.10528 6.45144 6.54281 7.29011 8.20240 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.013466 B = 0.004636 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.741496 B = 6037.623861 C = 7416.672327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.518 5.518 3 C 0.355 3.645 4 C -0.450 4.450 5 H 0.118 0.882 6 C 0.040 3.960 7 N -0.772 5.772 8 Si 1.002 2.998 9 H -0.263 1.263 10 H -0.247 1.247 11 H -0.273 1.273 12 N -0.370 5.370 13 N -0.381 5.381 14 C 0.333 3.667 15 N -0.554 5.554 16 C 0.071 3.929 17 C -0.061 4.061 18 S -0.281 6.281 19 C -0.006 4.006 20 C -0.122 4.122 21 C -0.122 4.122 22 C 0.069 3.931 23 C 0.470 3.530 24 S -0.729 6.729 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.107 0.893 28 H 0.291 0.709 29 H 0.069 0.931 30 H 0.115 0.885 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.104 0.896 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.042 0.958 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.049 0.951 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.686 -2.498 -3.250 6.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.219 5.219 3 C 0.107 3.893 4 C -0.491 4.491 5 H 0.136 0.864 6 C -0.184 4.184 7 N -0.397 5.397 8 Si 0.821 3.179 9 H -0.187 1.187 10 H -0.170 1.170 11 H -0.198 1.198 12 N -0.203 5.203 13 N -0.167 5.167 14 C 0.122 3.878 15 N -0.280 5.280 16 C -0.058 4.058 17 C -0.210 4.210 18 S -0.053 6.053 19 C -0.117 4.117 20 C -0.180 4.180 21 C -0.181 4.181 22 C -0.061 4.061 23 C 0.100 3.900 24 S -0.605 6.605 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.125 0.875 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.133 0.867 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.122 0.878 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.071 -3.229 -4.268 8.093 hybrid contribution -1.083 1.743 1.140 2.348 sum 4.987 -1.486 -3.128 6.072 Atomic orbital electron populations 1.22030 0.73106 1.05254 1.04234 1.46275 1.09674 1.04149 1.61765 1.21649 0.84399 0.89364 0.93845 1.18904 0.97264 0.85458 1.47491 0.86411 1.26809 0.94048 1.05847 0.91701 1.69952 1.03135 1.36946 1.29649 0.84878 0.79373 0.73823 0.79802 1.18733 1.17005 1.19756 1.79316 1.14955 0.82996 1.43042 1.49356 1.03981 1.06848 1.56505 1.21891 0.82784 0.92602 0.90512 1.61346 1.30501 1.26752 1.09425 1.21985 1.01515 0.90559 0.91790 1.23324 0.97436 1.02281 0.97963 1.86639 1.32721 1.39836 1.46138 1.22855 1.01072 0.94991 0.92739 1.21654 0.92089 1.00303 1.03991 1.21838 0.96502 0.97646 1.02103 1.22344 0.87408 0.98437 0.97862 1.22892 0.85321 0.92361 0.89457 1.92699 1.85255 1.00190 1.82357 0.90168 0.89209 0.87501 0.89779 0.91352 0.86690 0.91546 0.94742 0.87761 0.90528 0.88841 0.91013 0.91557 0.93897 0.91669 0.90917 0.93230 0.87503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.20 10.66 127.77 1.36 4.57 16 2 N -0.52 -22.60 3.17 -548.30 -1.74 -24.34 16 3 C 0.36 16.75 7.50 133.53 1.00 17.75 16 4 C -0.45 -19.74 8.99 23.17 0.21 -19.53 16 5 H 0.12 4.52 7.08 -2.91 -0.02 4.50 16 6 C 0.04 1.68 5.49 85.28 0.47 2.14 16 7 N -0.77 -35.84 11.92 21.84 0.26 -35.58 16 8 Si 1.00 31.64 29.56 68.60 2.03 33.67 16 9 H -0.26 -8.18 7.11 99.48 0.71 -7.48 16 10 H -0.25 -7.27 7.11 99.48 0.71 -6.57 16 11 H -0.27 -8.53 7.11 99.48 0.71 -7.82 16 12 N -0.37 -18.08 9.23 -55.17 -0.51 -18.58 16 13 N -0.38 -17.02 2.62 -359.72 -0.94 -17.96 16 14 C 0.33 12.40 6.15 170.81 1.05 13.45 16 15 N -0.55 -18.80 3.80 -909.90 -3.46 -22.25 16 16 C 0.07 2.66 5.18 86.47 0.45 3.11 16 17 C -0.06 -2.03 6.33 72.07 0.46 -1.57 16 18 S -0.28 -8.10 21.18 -56.49 -1.20 -9.29 16 19 C -0.01 -0.16 0.89 -10.71 -0.01 -0.16 16 20 C -0.12 -2.17 8.53 71.98 0.61 -1.55 16 21 C -0.12 -3.13 8.27 71.98 0.60 -2.53 16 22 C 0.07 1.81 4.15 86.47 0.36 2.17 16 23 C 0.47 21.76 7.84 179.06 1.40 23.17 16 24 S -0.73 -35.09 29.50 -56.49 -1.67 -36.76 16 25 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.09 3.03 7.61 -2.39 -0.02 3.01 16 27 H 0.11 3.05 7.27 -2.39 -0.02 3.03 16 28 H 0.29 12.33 8.30 -92.70 -0.77 11.56 16 29 H 0.07 2.45 8.08 -2.39 -0.02 2.43 16 30 H 0.12 4.22 7.65 -2.39 -0.02 4.20 16 31 H 0.07 3.02 5.35 -2.39 -0.01 3.01 16 32 H 0.03 1.35 7.91 -2.39 -0.02 1.33 16 33 H 0.10 3.30 8.14 -2.39 -0.02 3.29 16 34 H 0.08 2.69 7.54 -2.39 -0.02 2.68 16 35 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.04 1.39 6.67 -2.39 -0.02 1.37 16 39 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.05 1.33 7.91 -2.39 -0.02 1.31 16 42 H 0.11 2.38 7.96 -2.39 -0.02 2.36 16 Total: -1.00 -60.36 358.61 1.75 -58.61 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: 1.02 Total: 31.49 kcal Atomic # 6 Polarization: 33.06 SS G_CDS: 7.96 Total: 41.01 kcal Atomic # 7 Polarization: -112.34 SS G_CDS: -6.39 Total: -118.72 kcal Atomic # 14 Polarization: 31.64 SS G_CDS: 2.03 Total: 33.67 kcal Atomic # 16 Polarization: -43.19 SS G_CDS: -2.86 Total: -46.05 kcal Total: -60.36 1.75 -58.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794632680.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.618 kcal (2) G-P(sol) polarization free energy of solvation -60.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.89 seconds