Wall clock time and date at job start Tue Mar 31 2020 16:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.78743 * 2 1 4 4 C 1.53246 * 109.63116 * 120.49106 * 2 1 3 5 5 N 1.46468 * 109.85888 * 57.70392 * 4 2 1 6 6 C 1.46896 * 110.99843 * 197.75964 * 5 4 2 7 7 N 1.46506 * 109.46753 * 169.99907 * 6 5 4 8 8 N 1.40161 * 126.14197 * 90.03027 * 7 6 5 9 9 C 1.32242 * 107.75632 * 179.97438 * 8 7 6 10 10 C 1.40124 * 125.92502 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99503 * 180.02562 * 10 9 8 12 12 C 1.40030 * 120.00024 * 0.02562 * 10 9 8 13 13 N 1.30796 * 120.00057 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99929 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46759 * 90.00355 * 14 12 10 16 16 H 1.48500 * 109.47186 * 210.00449 * 14 12 10 17 17 H 1.48501 * 109.47322 * 330.00385 * 14 12 10 18 18 N 1.38498 * 108.14908 * 359.97438 * 9 8 7 19 19 C 1.46498 * 125.83741 * 180.02562 * 18 9 8 20 20 C 1.34738 * 108.32802 * 359.76505 * 18 9 8 21 21 S 1.71198 * 125.97104 * 180.24392 * 20 18 9 22 22 C 1.46470 * 112.55641 * 72.65200 * 5 4 2 23 23 C 1.53244 * 109.86531 * 287.34242 * 22 5 4 24 24 H 1.09001 * 109.63302 * 302.30073 * 23 22 5 25 25 C 1.52997 * 109.79735 * 181.80506 * 23 22 5 26 26 S 1.81898 * 109.63039 * 239.50882 * 2 1 3 27 27 H 1.08996 * 109.47079 * 299.50474 * 1 2 3 28 28 H 1.08997 * 109.47401 * 59.50604 * 1 2 3 29 29 H 1.08997 * 109.47191 * 179.50606 * 1 2 3 30 30 H 1.08990 * 109.40806 * 297.58243 * 4 2 1 31 31 H 1.09001 * 109.40436 * 177.82211 * 4 2 1 32 32 H 1.08994 * 109.46913 * 50.00474 * 6 5 4 33 33 H 1.08997 * 109.47291 * 289.99966 * 6 5 4 34 34 H 0.97000 * 120.00138 * 179.97438 * 13 12 10 35 35 H 1.08998 * 109.46993 * 90.00716 * 19 18 9 36 36 H 1.09005 * 109.47253 * 210.00157 * 19 18 9 37 37 H 1.08996 * 109.47172 * 330.00808 * 19 18 9 38 38 H 1.09001 * 109.40930 * 47.46485 * 22 5 4 39 39 H 1.09008 * 109.40344 * 167.22337 * 22 5 4 40 40 H 1.08995 * 109.46974 * 300.88972 * 25 23 22 41 41 H 1.09002 * 109.47147 * 60.89041 * 25 23 22 42 42 H 1.08998 * 109.47056 * 180.88614 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8991 1.0257 0.0000 4 6 2.0449 -0.7324 1.2438 5 7 1.5188 -2.0991 1.2698 6 6 1.6326 -2.6814 2.6136 7 7 0.8891 -3.9428 2.6637 8 7 1.3991 -5.2151 2.3710 9 6 0.4199 -6.0891 2.5327 10 6 0.5135 -7.4738 2.3395 11 1 -0.3511 -8.1009 2.4994 12 6 1.7280 -8.0443 1.9391 13 7 2.7751 -7.2848 1.7459 14 14 1.8525 -9.8902 1.6808 15 1 1.5199 -10.2161 0.2707 16 1 3.2360 -10.3396 1.9797 17 1 0.9007 -10.5821 2.5866 18 7 -0.7142 -5.3983 2.9263 19 6 -2.0231 -5.9907 3.2128 20 6 -0.4065 -4.0890 3.0062 21 16 -1.4752 -2.8306 3.4590 22 6 2.1485 -2.9627 0.2684 23 6 1.6502 -2.5865 -1.1311 24 1 0.5642 -2.6713 -1.1682 25 6 2.2745 -3.5186 -2.1714 26 16 2.1411 -0.8693 -1.4763 27 1 -0.3633 0.5061 0.8944 28 1 -0.3634 0.5215 -0.8855 29 1 -0.3633 -1.0276 -0.0089 30 1 1.7183 -0.2015 2.1378 31 1 3.1342 -0.7640 1.2204 32 1 1.2207 -1.9876 3.3463 33 1 2.6821 -2.8689 2.8406 34 1 3.6165 -7.6800 1.4689 35 1 -2.0784 -6.2563 4.2685 36 1 -2.8071 -5.2708 2.9778 37 1 -2.1576 -6.8857 2.6054 38 1 3.2306 -2.8395 0.3128 39 1 1.8949 -4.0024 0.4758 40 1 3.3605 -3.4368 -2.1273 41 1 1.9787 -4.5466 -1.9621 42 1 1.9289 -3.2364 -3.1659 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794636269.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:42 Heat of formation + Delta-G solvation = 83.297092 kcal Electronic energy + Delta-G solvation = -24876.391797 eV Core-core repulsion = 21531.400016 eV Total energy + Delta-G solvation = -3344.991781 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.94517 -38.32624 -34.68349 -34.02516 -33.72279 -32.25386 -30.57012 -27.98776 -26.85871 -26.55395 -25.56862 -23.45654 -21.78120 -21.44055 -20.91420 -20.37517 -17.82123 -16.85472 -16.81204 -15.77187 -15.71385 -15.36147 -15.09885 -14.81916 -14.68455 -14.26519 -13.94099 -13.67933 -13.20153 -13.09277 -12.58617 -12.42262 -12.34743 -12.21899 -11.91084 -11.87326 -11.58901 -11.49153 -11.35676 -11.22989 -11.11070 -11.03486 -10.67203 -10.55739 -10.30048 -10.14913 -9.64640 -9.43415 -9.29133 -8.95113 -8.23409 -7.54148 -7.13420 -6.79240 -6.69406 -5.22686 1.91513 2.27221 2.54742 2.65001 2.71966 2.86007 2.89492 3.31978 3.44581 3.58474 3.91195 4.14204 4.76250 4.79190 4.92886 5.08860 5.14534 5.22099 5.30629 5.38957 5.50601 5.57019 5.63033 5.68245 5.77847 5.81476 5.86813 6.02168 6.04327 6.08033 6.10792 6.16050 6.26134 6.34063 6.50214 6.59241 6.72734 6.93866 7.04411 7.10142 7.54067 7.71491 8.16069 8.27447 9.07070 9.83826 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.012285 B = 0.005084 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.621753 B = 5506.628521 C = 7091.826849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.038 4.038 3 H 0.107 0.893 4 C 0.068 3.932 5 N -0.555 5.555 6 C 0.334 3.666 7 N -0.381 5.381 8 N -0.347 5.347 9 C 0.376 3.624 10 C -0.435 4.435 11 H 0.097 0.903 12 C 0.078 3.922 13 N -0.737 5.737 14 Si 0.927 3.073 15 H -0.265 1.265 16 H -0.273 1.273 17 H -0.259 1.259 18 N -0.517 5.517 19 C 0.100 3.900 20 C 0.482 3.518 21 S -0.704 6.704 22 C 0.056 3.944 23 C -0.034 4.034 24 H 0.091 0.909 25 C -0.130 4.130 26 S -0.286 6.286 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.112 0.888 33 H 0.065 0.935 34 H 0.286 0.714 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.044 0.956 39 H 0.112 0.888 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.763 3.337 -3.952 5.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.167 4.167 3 H 0.125 0.875 4 C -0.062 4.062 5 N -0.281 5.281 6 C 0.123 3.877 7 N -0.167 5.167 8 N -0.179 5.179 9 C 0.128 3.872 10 C -0.477 4.477 11 H 0.115 0.885 12 C -0.149 4.149 13 N -0.361 5.361 14 Si 0.750 3.250 15 H -0.190 1.190 16 H -0.198 1.198 17 H -0.183 1.183 18 N -0.218 5.218 19 C -0.043 4.043 20 C 0.113 3.887 21 S -0.579 6.579 22 C -0.074 4.074 23 C -0.163 4.163 24 H 0.110 0.890 25 C -0.189 4.189 26 S -0.059 6.059 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.129 0.871 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.062 0.938 39 H 0.130 0.870 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.497 4.742 -5.018 7.341 hybrid contribution 0.084 -2.063 1.026 2.305 sum 2.581 2.679 -3.992 5.457 Atomic orbital electron populations 1.21862 0.91951 1.03920 1.01410 1.23195 1.00011 1.00103 0.93415 0.87517 1.22094 0.97362 0.88569 0.98134 1.60872 1.59699 1.02112 1.05416 1.21596 0.94231 0.81259 0.90648 1.49089 1.06594 1.08278 1.52705 1.79295 1.16061 0.83465 1.39107 1.21259 0.79204 0.94680 0.92093 1.18371 0.98534 0.87177 1.43611 0.88484 1.25819 0.94479 1.01414 0.93196 1.69856 1.01082 1.37515 1.27692 0.85974 0.78923 0.80213 0.79854 1.19035 1.19784 1.18267 1.45976 1.12572 1.05145 1.58133 1.21751 0.81727 0.99148 1.01639 1.22891 0.88451 0.88156 0.89191 1.92732 1.52983 1.37369 1.74853 1.22445 0.96273 0.99569 0.89065 1.23163 1.03361 0.92048 0.97690 0.89042 1.21564 1.01158 0.98824 0.97347 1.86671 1.78768 1.08146 1.32341 0.91847 0.92791 0.90824 0.89367 0.93442 0.87070 0.91689 0.90334 0.91531 0.89199 0.89805 0.93808 0.87022 0.91861 0.90760 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 8.97 37.16 0.33 -1.53 16 2 C -0.04 -0.50 3.48 -26.60 -0.09 -0.59 16 3 H 0.11 1.20 8.14 -51.92 -0.42 0.78 16 4 C 0.07 0.93 4.90 -3.93 -0.02 0.91 16 5 N -0.55 -9.23 3.72 -238.95 -0.89 -10.12 16 6 C 0.33 6.10 5.92 -63.31 -0.37 5.73 16 7 N -0.38 -8.32 3.31 -65.05 -0.22 -8.54 16 8 N -0.35 -8.27 9.29 31.21 0.29 -7.98 16 9 C 0.38 8.81 7.50 -155.27 -1.16 7.65 16 10 C -0.44 -9.68 8.98 -38.20 -0.34 -10.02 16 11 H 0.10 1.95 7.11 -52.49 -0.37 1.58 16 12 C 0.08 1.66 5.50 -17.32 -0.10 1.57 16 13 N -0.74 -16.81 11.90 55.55 0.66 -16.15 16 14 Si 0.93 15.94 29.56 -169.99 -5.02 10.92 16 15 H -0.27 -4.55 7.11 56.52 0.40 -4.14 16 16 H -0.27 -4.69 7.11 56.52 0.40 -4.29 16 17 H -0.26 -4.36 7.11 56.52 0.40 -3.96 16 18 N -0.52 -11.29 3.17 -124.66 -0.39 -11.69 16 19 C 0.10 1.74 10.64 59.85 0.64 2.38 16 20 C 0.48 11.03 7.84 -86.93 -0.68 10.34 16 21 S -0.70 -16.76 29.50 -107.50 -3.17 -19.94 16 22 C 0.06 0.96 4.65 -3.93 -0.02 0.94 16 23 C -0.03 -0.53 2.97 -26.61 -0.08 -0.60 16 24 H 0.09 1.58 7.54 -51.93 -0.39 1.19 16 25 C -0.13 -1.82 9.24 37.16 0.34 -1.48 16 26 S -0.29 -4.16 21.18 -107.50 -2.28 -6.44 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 1.26 6.68 -51.93 -0.35 0.91 16 30 H 0.09 1.10 7.76 -51.93 -0.40 0.70 16 31 H 0.05 0.62 7.92 -51.93 -0.41 0.21 16 32 H 0.11 2.00 7.33 -51.93 -0.38 1.62 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.29 5.93 8.30 -40.82 -0.34 5.59 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.09 1.56 7.62 -51.93 -0.40 1.16 16 37 H 0.08 1.27 7.32 -51.93 -0.38 0.89 16 38 H 0.04 0.75 7.92 -51.93 -0.41 0.34 16 39 H 0.11 2.33 5.95 -51.92 -0.31 2.02 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 360.09 15.07 5.43 5.43 Total: -1.00 -27.59 360.09 -13.47 -41.05 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -6.32 Total: 8.15 kcal Atomic # 6 Polarization: 16.85 SS G_CDS: -1.55 Total: 15.30 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.55 Total: -54.47 kcal Atomic # 14 Polarization: 15.94 SS G_CDS: -5.02 Total: 10.92 kcal Atomic # 16 Polarization: -20.92 SS G_CDS: -5.45 Total: -26.37 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -27.59 -13.47 -41.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794636269.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.352 kcal (2) G-P(sol) polarization free energy of solvation -27.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds