Wall clock time and date at job start Tue Mar 31 2020 16:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.78743 * 2 1 4 4 C 1.53246 * 109.63116 * 120.49106 * 2 1 3 5 5 N 1.46468 * 109.85888 * 57.70392 * 4 2 1 6 6 C 1.46896 * 110.99843 * 197.75964 * 5 4 2 7 7 N 1.46506 * 109.46753 * 169.99907 * 6 5 4 8 8 N 1.40161 * 126.14197 * 90.03027 * 7 6 5 9 9 C 1.32242 * 107.75632 * 179.97438 * 8 7 6 10 10 C 1.40124 * 125.92502 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99503 * 180.02562 * 10 9 8 12 12 C 1.40030 * 120.00024 * 0.02562 * 10 9 8 13 13 N 1.30796 * 120.00057 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99929 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46759 * 90.00355 * 14 12 10 16 16 H 1.48500 * 109.47186 * 210.00449 * 14 12 10 17 17 H 1.48501 * 109.47322 * 330.00385 * 14 12 10 18 18 N 1.38498 * 108.14908 * 359.97438 * 9 8 7 19 19 C 1.46498 * 125.83741 * 180.02562 * 18 9 8 20 20 C 1.34738 * 108.32802 * 359.76505 * 18 9 8 21 21 S 1.71198 * 125.97104 * 180.24392 * 20 18 9 22 22 C 1.46470 * 112.55641 * 72.65200 * 5 4 2 23 23 C 1.53244 * 109.86531 * 287.34242 * 22 5 4 24 24 H 1.09001 * 109.63302 * 302.30073 * 23 22 5 25 25 C 1.52997 * 109.79735 * 181.80506 * 23 22 5 26 26 S 1.81898 * 109.63039 * 239.50882 * 2 1 3 27 27 H 1.08996 * 109.47079 * 299.50474 * 1 2 3 28 28 H 1.08997 * 109.47401 * 59.50604 * 1 2 3 29 29 H 1.08997 * 109.47191 * 179.50606 * 1 2 3 30 30 H 1.08990 * 109.40806 * 297.58243 * 4 2 1 31 31 H 1.09001 * 109.40436 * 177.82211 * 4 2 1 32 32 H 1.08994 * 109.46913 * 50.00474 * 6 5 4 33 33 H 1.08997 * 109.47291 * 289.99966 * 6 5 4 34 34 H 0.97000 * 120.00138 * 179.97438 * 13 12 10 35 35 H 1.08998 * 109.46993 * 90.00716 * 19 18 9 36 36 H 1.09005 * 109.47253 * 210.00157 * 19 18 9 37 37 H 1.08996 * 109.47172 * 330.00808 * 19 18 9 38 38 H 1.09001 * 109.40930 * 47.46485 * 22 5 4 39 39 H 1.09008 * 109.40344 * 167.22337 * 22 5 4 40 40 H 1.08995 * 109.46974 * 300.88972 * 25 23 22 41 41 H 1.09002 * 109.47147 * 60.89041 * 25 23 22 42 42 H 1.08998 * 109.47056 * 180.88614 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8991 1.0257 0.0000 4 6 2.0449 -0.7324 1.2438 5 7 1.5188 -2.0991 1.2698 6 6 1.6326 -2.6814 2.6136 7 7 0.8891 -3.9428 2.6637 8 7 1.3991 -5.2151 2.3710 9 6 0.4199 -6.0891 2.5327 10 6 0.5135 -7.4738 2.3395 11 1 -0.3511 -8.1009 2.4994 12 6 1.7280 -8.0443 1.9391 13 7 2.7751 -7.2848 1.7459 14 14 1.8525 -9.8902 1.6808 15 1 1.5199 -10.2161 0.2707 16 1 3.2360 -10.3396 1.9797 17 1 0.9007 -10.5821 2.5866 18 7 -0.7142 -5.3983 2.9263 19 6 -2.0231 -5.9907 3.2128 20 6 -0.4065 -4.0890 3.0062 21 16 -1.4752 -2.8306 3.4590 22 6 2.1485 -2.9627 0.2684 23 6 1.6502 -2.5865 -1.1311 24 1 0.5642 -2.6713 -1.1682 25 6 2.2745 -3.5186 -2.1714 26 16 2.1411 -0.8693 -1.4763 27 1 -0.3633 0.5061 0.8944 28 1 -0.3634 0.5215 -0.8855 29 1 -0.3633 -1.0276 -0.0089 30 1 1.7183 -0.2015 2.1378 31 1 3.1342 -0.7640 1.2204 32 1 1.2207 -1.9876 3.3463 33 1 2.6821 -2.8689 2.8406 34 1 3.6165 -7.6800 1.4689 35 1 -2.0784 -6.2563 4.2685 36 1 -2.8071 -5.2708 2.9778 37 1 -2.1576 -6.8857 2.6054 38 1 3.2306 -2.8395 0.3128 39 1 1.8949 -4.0024 0.4758 40 1 3.3605 -3.4368 -2.1273 41 1 1.9787 -4.5466 -1.9621 42 1 1.9289 -3.2364 -3.1659 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794636269.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:39 Heat of formation + Delta-G solvation = 71.375366 kcal Electronic energy + Delta-G solvation = -24876.908762 eV Core-core repulsion = 21531.400016 eV Total energy + Delta-G solvation = -3345.508746 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.64403 -39.65714 -36.26029 -35.65395 -34.93741 -33.63043 -32.20387 -29.50859 -28.33774 -27.94017 -26.98027 -24.89664 -23.11591 -23.01719 -22.54606 -21.61840 -19.47952 -18.45378 -18.14716 -17.42879 -17.17200 -16.76650 -16.59369 -16.26425 -16.04124 -15.61819 -15.30085 -15.05917 -14.55277 -14.34576 -13.82757 -13.79459 -13.71164 -13.60644 -13.45160 -13.24623 -13.01861 -12.82015 -12.63265 -12.55182 -12.45070 -12.39825 -12.22582 -12.00503 -11.74559 -11.50976 -11.35455 -10.91512 -10.71902 -10.60695 -9.56281 -8.80336 -8.72601 -8.62739 -8.53122 -6.96648 0.53541 0.74559 0.83691 1.27365 1.44982 1.46258 1.59281 1.66440 1.85105 2.12235 2.40173 2.67186 3.09169 3.52732 3.66248 3.71140 3.95176 3.97954 4.02497 4.06983 4.16061 4.25564 4.40362 4.45262 4.51356 4.55142 4.63440 4.68984 4.70805 4.85954 4.86451 4.90757 4.92308 4.95738 5.06071 5.09597 5.28116 5.39565 5.63946 5.67820 5.95183 6.13325 6.48203 6.57357 7.32938 8.23226 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.012285 B = 0.005084 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.621753 B = 5506.628521 C = 7091.826849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.034 4.034 3 H 0.138 0.862 4 C 0.067 3.933 5 N -0.560 5.560 6 C 0.332 3.668 7 N -0.375 5.375 8 N -0.368 5.368 9 C 0.354 3.646 10 C -0.449 4.449 11 H 0.116 0.884 12 C 0.039 3.961 13 N -0.771 5.771 14 Si 1.001 2.999 15 H -0.262 1.262 16 H -0.273 1.273 17 H -0.249 1.249 18 N -0.518 5.518 19 C 0.096 3.904 20 C 0.469 3.531 21 S -0.733 6.733 22 C 0.068 3.932 23 C -0.032 4.032 24 H 0.069 0.931 25 C -0.123 4.123 26 S -0.277 6.277 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.038 0.962 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.114 0.886 33 H 0.070 0.930 34 H 0.291 0.709 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.043 0.957 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.184 3.052 -4.445 5.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.163 4.163 3 H 0.155 0.845 4 C -0.062 4.062 5 N -0.287 5.287 6 C 0.121 3.879 7 N -0.161 5.161 8 N -0.201 5.201 9 C 0.106 3.894 10 C -0.491 4.491 11 H 0.134 0.866 12 C -0.184 4.184 13 N -0.396 5.396 14 Si 0.821 3.179 15 H -0.187 1.187 16 H -0.197 1.197 17 H -0.172 1.172 18 N -0.219 5.219 19 C -0.046 4.046 20 C 0.098 3.902 21 S -0.610 6.610 22 C -0.061 4.061 23 C -0.161 4.161 24 H 0.087 0.913 25 C -0.182 4.182 26 S -0.050 6.050 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.121 0.879 31 H 0.077 0.923 32 H 0.132 0.868 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.124 0.876 38 H 0.061 0.939 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.908 4.478 -5.511 7.673 hybrid contribution -0.016 -1.941 1.170 2.266 sum 2.892 2.537 -4.341 5.800 Atomic orbital electron populations 1.21746 0.92612 1.01784 1.02127 1.23309 0.99327 1.01299 0.92335 0.84460 1.22237 0.98016 0.86780 0.99180 1.60870 1.60200 1.03295 1.04286 1.21749 0.94078 0.80324 0.91747 1.49399 1.06409 1.08771 1.51550 1.79244 1.16938 0.84263 1.39669 1.21651 0.79709 0.95359 0.92648 1.18880 0.99751 0.86997 1.43452 0.86608 1.26777 0.93654 1.05817 0.92156 1.69942 1.01829 1.39690 1.28127 0.84877 0.78914 0.74319 0.79829 1.18703 1.19734 1.17189 1.46242 1.13528 1.04678 1.57455 1.22010 0.79833 0.99705 1.03042 1.22862 0.88732 0.88487 0.90083 1.92650 1.53689 1.38250 1.76382 1.22224 0.96088 0.97713 0.90091 1.23031 1.02021 0.93856 0.97215 0.91254 1.21513 1.01323 0.97799 0.97538 1.86618 1.78533 1.06668 1.33181 0.91502 0.91689 0.94279 0.87886 0.92307 0.86805 0.91250 0.89797 0.90074 0.89415 0.87612 0.93857 0.90796 0.91315 0.91966 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.34 8.97 71.98 0.65 -2.69 16 2 C -0.03 -0.82 3.48 30.68 0.11 -0.71 16 3 H 0.14 2.60 8.14 -2.38 -0.02 2.58 16 4 C 0.07 1.72 4.90 86.47 0.42 2.14 16 5 N -0.56 -18.73 3.72 -909.91 -3.39 -22.11 16 6 C 0.33 12.28 5.92 170.81 1.01 13.29 16 7 N -0.38 -16.79 3.31 -359.72 -1.19 -17.98 16 8 N -0.37 -17.95 9.29 -55.16 -0.51 -18.46 16 9 C 0.35 16.77 7.50 133.52 1.00 17.77 16 10 C -0.45 -19.75 8.98 23.16 0.21 -19.54 16 11 H 0.12 4.47 7.11 -2.91 -0.02 4.45 16 12 C 0.04 1.67 5.50 85.28 0.47 2.13 16 13 N -0.77 -35.39 11.90 21.84 0.26 -35.13 16 14 Si 1.00 31.52 29.56 68.60 2.03 33.55 16 15 H -0.26 -8.10 7.11 99.48 0.71 -7.39 16 16 H -0.27 -8.50 7.11 99.48 0.71 -7.79 16 17 H -0.25 -7.38 7.11 99.48 0.71 -6.67 16 18 N -0.52 -22.78 3.17 -548.30 -1.74 -24.52 16 19 C 0.10 3.26 10.64 127.77 1.36 4.62 16 20 C 0.47 21.82 7.84 179.06 1.40 23.22 16 21 S -0.73 -35.30 29.50 -56.49 -1.67 -36.97 16 22 C 0.07 2.40 4.65 86.47 0.40 2.80 16 23 C -0.03 -1.01 2.97 30.68 0.09 -0.92 16 24 H 0.07 2.49 7.54 -2.39 -0.02 2.47 16 25 C -0.12 -3.44 9.24 71.98 0.67 -2.78 16 26 S -0.28 -7.63 21.18 -56.49 -1.20 -8.83 16 27 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 29 H 0.04 1.33 6.68 -2.39 -0.02 1.31 16 30 H 0.10 2.38 7.76 -2.39 -0.02 2.36 16 31 H 0.06 1.42 7.92 -2.39 -0.02 1.40 16 32 H 0.11 4.13 7.33 -2.39 -0.02 4.11 16 33 H 0.07 2.47 8.14 -2.39 -0.02 2.46 16 34 H 0.29 12.15 8.30 -92.71 -0.77 11.38 16 35 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.09 3.02 7.62 -2.38 -0.02 3.00 16 37 H 0.11 3.08 7.32 -2.39 -0.02 3.06 16 38 H 0.04 1.49 7.92 -2.39 -0.02 1.47 16 39 H 0.07 3.21 5.95 -2.38 -0.01 3.19 16 40 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -59.80 360.09 1.40 -58.40 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: 1.02 Total: 32.72 kcal Atomic # 6 Polarization: 31.55 SS G_CDS: 7.79 Total: 39.34 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -6.57 Total: -118.21 kcal Atomic # 14 Polarization: 31.52 SS G_CDS: 2.03 Total: 33.55 kcal Atomic # 16 Polarization: -42.94 SS G_CDS: -2.86 Total: -45.80 kcal Total: -59.80 1.40 -58.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794636269.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.776 kcal (2) G-P(sol) polarization free energy of solvation -59.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds