Wall clock time and date at job start Tue Mar 31 2020 15:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.55998 * 2 1 4 4 C 1.50608 * 109.64841 * 120.27497 * 2 1 3 5 5 C 1.54640 * 116.53605 * 209.04714 * 4 2 1 6 6 N 1.47217 * 117.47412 * 313.36033 * 5 4 2 7 7 C 1.46894 * 110.99854 * 193.33857 * 6 5 4 8 8 N 1.46504 * 109.47116 * 190.52312 * 7 6 5 9 9 N 1.40162 * 126.14912 * 270.18748 * 8 7 6 10 10 C 1.32238 * 107.76101 * 180.26085 * 9 8 7 11 11 C 1.40122 * 125.92767 * 179.72405 * 10 9 8 12 12 H 1.08001 * 119.99639 * 180.02562 * 11 10 9 13 13 C 1.40030 * 119.99805 * 0.02562 * 11 10 9 14 14 N 1.30793 * 120.00321 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99720 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47210 * 60.00051 * 15 13 11 17 17 H 1.48507 * 109.47116 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47317 * 299.99966 * 15 13 11 19 19 N 1.38500 * 108.14512 * 359.74316 * 10 9 8 20 20 C 1.46503 * 125.83497 * 179.97438 * 19 10 9 21 21 C 1.34726 * 108.33373 * 0.02562 * 19 10 9 22 22 S 1.71198 * 125.97671 * 180.02562 * 21 19 10 23 23 C 1.43442 * 111.40687 * 317.59373 * 6 5 4 24 24 C 1.52278 * 104.90744 * 100.56417 * 23 6 5 25 25 S 1.74923 * 114.46253 * 267.14397 * 24 23 6 26 26 H 1.08997 * 109.47353 * 180.21599 * 1 2 3 27 27 H 1.09002 * 109.46994 * 300.21844 * 1 2 3 28 28 H 1.09004 * 109.47004 * 60.21808 * 1 2 3 29 29 H 1.08997 * 108.03637 * 330.82170 * 4 2 1 30 30 H 1.08994 * 108.04068 * 87.30295 * 4 2 1 31 31 H 1.08994 * 107.84420 * 191.34067 * 5 4 2 32 32 H 1.08997 * 107.84476 * 75.38071 * 5 4 2 33 33 H 1.08996 * 109.46833 * 70.52793 * 7 6 5 34 34 H 1.08997 * 109.47732 * 310.52505 * 7 6 5 35 35 H 0.97001 * 120.00289 * 179.97438 * 14 13 11 36 36 H 1.09000 * 109.47370 * 270.00509 * 20 19 10 37 37 H 1.08995 * 109.47190 * 30.00490 * 20 19 10 38 38 H 1.09000 * 109.47025 * 150.00100 * 20 19 10 39 39 H 1.08999 * 110.34918 * 219.41358 * 23 6 5 40 40 H 1.09006 * 110.34390 * 341.71649 * 23 6 5 41 41 H 1.08994 * 108.48652 * 28.43340 * 24 23 6 42 42 H 1.09001 * 108.48382 * 146.01984 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8949 1.0271 0.0000 4 6 2.0364 -0.7151 1.2249 5 6 3.4078 -0.2580 1.7743 6 7 4.5044 -0.0877 0.8069 7 6 5.7973 0.0354 1.4932 8 7 6.8224 0.4512 0.5327 9 7 7.6235 -0.3993 -0.2416 10 6 8.4234 0.3567 -0.9746 11 6 9.3856 -0.1041 -1.8830 12 1 9.9900 0.6016 -2.4336 13 6 9.5635 -1.4794 -2.0769 14 7 8.8312 -2.3340 -1.4105 15 14 10.8467 -2.0937 -3.2875 16 1 12.1891 -1.6134 -2.8721 17 1 10.8365 -3.5786 -3.3088 18 1 10.5344 -1.5775 -4.6444 19 7 8.1455 1.6829 -0.6882 20 6 8.8079 2.8460 -1.2837 21 6 7.1626 1.7207 0.2325 22 16 6.4705 3.1336 0.9074 23 6 4.5296 -1.1565 -0.1494 24 6 3.8699 -0.5823 -1.3960 25 16 2.1493 -0.8773 -1.5062 26 1 -0.3634 -1.0276 0.0039 27 1 -0.3633 0.5172 0.8880 28 1 -0.3633 0.5105 -0.8920 29 1 1.2977 -0.5923 2.0169 30 1 2.1040 -1.7776 0.9917 31 1 3.7291 -0.9865 2.5186 32 1 3.2625 0.6937 2.2853 33 1 6.0727 -0.9270 1.9246 34 1 5.7188 0.7796 2.2857 35 1 8.9541 -3.2867 -1.5451 36 1 9.6737 3.1194 -0.6807 37 1 9.1322 2.6011 -2.2950 38 1 8.1105 3.6830 -1.3185 39 1 5.5575 -1.4483 -0.3647 40 1 3.9616 -2.0100 0.2211 41 1 4.0376 0.4945 -1.4109 42 1 4.3497 -1.0178 -2.2726 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794644756.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:24 Heat of formation + Delta-G solvation = 87.879096 kcal Electronic energy + Delta-G solvation = -24634.889159 eV Core-core repulsion = 21290.096069 eV Total energy + Delta-G solvation = -3344.793091 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.109 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -40.93613 -38.46554 -35.13672 -34.17715 -33.73334 -31.32913 -30.52425 -29.14488 -27.20304 -26.63431 -24.43467 -23.77104 -22.54165 -21.47100 -20.91078 -19.75652 -17.80606 -16.98899 -16.83456 -15.89916 -15.76917 -15.51979 -15.02881 -14.85592 -14.60341 -14.36966 -14.13534 -13.67435 -13.42176 -13.11446 -12.90824 -12.31830 -12.27270 -12.15596 -12.02161 -11.87355 -11.80511 -11.56067 -11.33912 -11.11285 -11.06433 -10.73518 -10.69503 -10.56945 -10.38727 -10.10855 -9.64596 -9.48909 -9.27667 -8.93695 -8.18425 -7.45399 -7.11988 -6.78548 -6.68587 -5.21115 2.00341 2.28112 2.56042 2.74846 2.79700 2.87030 2.88968 3.32687 3.46596 3.59904 3.97643 4.23404 4.54488 4.77948 4.85066 5.06039 5.18070 5.24625 5.33833 5.38741 5.44461 5.53173 5.56034 5.65313 5.67617 5.71882 5.82568 5.82582 5.89078 6.00427 6.06307 6.15127 6.17081 6.32758 6.38611 6.52055 6.74347 6.95432 7.11642 7.26248 7.57012 7.73299 8.17672 8.28883 9.08501 9.85515 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.012794 B = 0.004552 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.939291 B = 6149.743247 C = 7441.213300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.036 4.036 3 H 0.095 0.905 4 C -0.113 4.113 5 C 0.061 3.939 6 N -0.544 5.544 7 C 0.329 3.671 8 N -0.379 5.379 9 N -0.347 5.347 10 C 0.377 3.623 11 C -0.436 4.436 12 H 0.097 0.903 13 C 0.078 3.922 14 N -0.739 5.739 15 Si 0.928 3.072 16 H -0.262 1.262 17 H -0.274 1.274 18 H -0.262 1.262 19 N -0.517 5.517 20 C 0.100 3.900 21 C 0.481 3.519 22 S -0.706 6.706 23 C 0.048 3.952 24 C -0.096 4.096 25 S -0.255 6.255 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.110 0.890 35 H 0.286 0.714 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.151 -2.146 1.052 7.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.164 4.164 3 H 0.113 0.887 4 C -0.152 4.152 5 C -0.067 4.067 6 N -0.270 5.270 7 C 0.117 3.883 8 N -0.165 5.165 9 N -0.179 5.179 10 C 0.129 3.871 11 C -0.478 4.478 12 H 0.115 0.885 13 C -0.149 4.149 14 N -0.363 5.363 15 Si 0.751 3.249 16 H -0.186 1.186 17 H -0.199 1.199 18 H -0.186 1.186 19 N -0.218 5.218 20 C -0.043 4.043 21 C 0.113 3.887 22 S -0.581 6.581 23 C -0.082 4.082 24 C -0.246 4.246 25 S -0.028 6.028 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.128 0.872 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.127 0.873 40 H 0.073 0.927 41 H 0.109 0.891 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.571 -2.703 0.744 9.017 hybrid contribution 2.157 -0.339 0.132 2.188 sum -6.413 -3.042 0.876 7.152 Atomic orbital electron populations 1.21667 0.92309 1.02545 1.02544 1.22979 0.98164 1.01832 0.93417 0.88681 1.21751 0.95496 1.00793 0.97193 1.22204 0.89924 1.01303 0.93252 1.61201 1.03174 1.45323 1.17309 1.21650 0.79683 1.00174 0.86767 1.49075 1.30032 1.02900 1.34453 1.79249 1.13426 1.08729 1.16481 1.21228 0.94690 0.76703 0.94519 1.18338 1.16317 0.92995 1.20153 0.88516 1.25813 0.96729 0.96016 0.96302 1.69840 1.31229 1.03886 1.31329 0.86023 0.80321 0.78270 0.80312 1.18603 1.19872 1.18589 1.45972 1.31710 1.08677 1.35452 1.21754 0.97685 0.86551 0.98297 1.22868 0.86950 0.91335 0.87559 1.92728 1.71690 1.23270 1.70460 1.21955 1.03432 0.91581 0.91263 1.22573 0.94154 1.05897 1.01940 1.86099 1.06443 1.73170 1.37120 0.92024 0.91328 0.91740 0.90259 0.91180 0.94581 0.90606 0.91562 0.87243 0.90279 0.91515 0.89808 0.89187 0.87318 0.92674 0.89057 0.88780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 9.02 37.16 0.34 -0.97 16 2 C -0.04 -0.45 3.03 -27.93 -0.08 -0.53 16 3 H 0.09 1.35 8.06 -51.93 -0.42 0.94 16 4 C -0.11 -1.29 4.61 -27.07 -0.12 -1.41 16 5 C 0.06 0.81 5.21 -2.79 -0.01 0.79 16 6 N -0.54 -9.11 4.11 -240.51 -0.99 -10.10 16 7 C 0.33 6.07 5.64 -63.32 -0.36 5.71 16 8 N -0.38 -8.39 3.46 -65.05 -0.23 -8.62 16 9 N -0.35 -8.36 9.31 31.21 0.29 -8.07 16 10 C 0.38 8.98 7.50 -155.27 -1.16 7.81 16 11 C -0.44 -9.87 8.98 -38.20 -0.34 -10.21 16 12 H 0.10 1.97 7.11 -52.49 -0.37 1.60 16 13 C 0.08 1.70 5.50 -17.32 -0.10 1.61 16 14 N -0.74 -17.12 11.90 55.55 0.66 -16.46 16 15 Si 0.93 16.22 29.56 -169.99 -5.02 11.20 16 16 H -0.26 -4.52 7.11 56.52 0.40 -4.12 16 17 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 18 H -0.26 -4.53 7.11 56.52 0.40 -4.13 16 19 N -0.52 -11.48 3.17 -124.66 -0.39 -11.88 16 20 C 0.10 1.77 10.65 59.85 0.64 2.41 16 21 C 0.48 11.21 7.84 -86.93 -0.68 10.52 16 22 S -0.71 -17.14 29.50 -107.50 -3.17 -20.32 16 23 C 0.05 0.83 5.30 -6.03 -0.03 0.80 16 24 C -0.10 -1.67 5.60 36.79 0.21 -1.46 16 25 S -0.26 -3.83 21.19 -107.50 -2.28 -6.11 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.72 7.68 -51.93 -0.40 0.32 16 30 H 0.07 0.84 6.79 -51.93 -0.35 0.48 16 31 H 0.04 0.43 7.95 -51.93 -0.41 0.02 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.16 8.11 -51.93 -0.42 0.74 16 34 H 0.11 2.00 7.58 -51.93 -0.39 1.61 16 35 H 0.29 6.06 8.30 -40.82 -0.34 5.72 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.08 1.30 7.32 -51.93 -0.38 0.92 16 38 H 0.09 1.59 7.61 -51.93 -0.40 1.19 16 39 H 0.11 2.25 5.91 -51.93 -0.31 1.95 16 40 H 0.06 0.88 6.32 -51.93 -0.33 0.55 16 41 H 0.09 1.82 7.81 -48.91 -0.38 1.44 16 42 H 0.09 1.72 8.14 -48.76 -0.40 1.32 16 LS Contribution 357.71 15.07 5.39 5.39 Total: -1.00 -28.25 357.71 -13.66 -41.92 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -6.20 Total: 7.97 kcal Atomic # 6 Polarization: 16.79 SS G_CDS: -1.72 Total: 15.07 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.66 Total: -55.12 kcal Atomic # 14 Polarization: 16.22 SS G_CDS: -5.02 Total: 11.20 kcal Atomic # 16 Polarization: -20.97 SS G_CDS: -5.45 Total: -26.42 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.25 -13.66 -41.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794644756.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.796 kcal (2) G-P(sol) polarization free energy of solvation -28.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds