Wall clock time and date at job start Tue Mar 31 2020 15:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.55998 * 2 1 4 4 C 1.50608 * 109.64841 * 120.27497 * 2 1 3 5 5 C 1.54640 * 116.53605 * 209.04714 * 4 2 1 6 6 N 1.47217 * 117.47412 * 313.36033 * 5 4 2 7 7 C 1.46894 * 110.99854 * 193.33857 * 6 5 4 8 8 N 1.46504 * 109.47116 * 190.52312 * 7 6 5 9 9 N 1.40162 * 126.14912 * 270.18748 * 8 7 6 10 10 C 1.32238 * 107.76101 * 180.26085 * 9 8 7 11 11 C 1.40122 * 125.92767 * 179.72405 * 10 9 8 12 12 H 1.08001 * 119.99639 * 180.02562 * 11 10 9 13 13 C 1.40030 * 119.99805 * 0.02562 * 11 10 9 14 14 N 1.30793 * 120.00321 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99720 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47210 * 60.00051 * 15 13 11 17 17 H 1.48507 * 109.47116 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47317 * 299.99966 * 15 13 11 19 19 N 1.38500 * 108.14512 * 359.74316 * 10 9 8 20 20 C 1.46503 * 125.83497 * 179.97438 * 19 10 9 21 21 C 1.34726 * 108.33373 * 0.02562 * 19 10 9 22 22 S 1.71198 * 125.97671 * 180.02562 * 21 19 10 23 23 C 1.43442 * 111.40687 * 317.59373 * 6 5 4 24 24 C 1.52278 * 104.90744 * 100.56417 * 23 6 5 25 25 S 1.74923 * 114.46253 * 267.14397 * 24 23 6 26 26 H 1.08997 * 109.47353 * 180.21599 * 1 2 3 27 27 H 1.09002 * 109.46994 * 300.21844 * 1 2 3 28 28 H 1.09004 * 109.47004 * 60.21808 * 1 2 3 29 29 H 1.08997 * 108.03637 * 330.82170 * 4 2 1 30 30 H 1.08994 * 108.04068 * 87.30295 * 4 2 1 31 31 H 1.08994 * 107.84420 * 191.34067 * 5 4 2 32 32 H 1.08997 * 107.84476 * 75.38071 * 5 4 2 33 33 H 1.08996 * 109.46833 * 70.52793 * 7 6 5 34 34 H 1.08997 * 109.47732 * 310.52505 * 7 6 5 35 35 H 0.97001 * 120.00289 * 179.97438 * 14 13 11 36 36 H 1.09000 * 109.47370 * 270.00509 * 20 19 10 37 37 H 1.08995 * 109.47190 * 30.00490 * 20 19 10 38 38 H 1.09000 * 109.47025 * 150.00100 * 20 19 10 39 39 H 1.08999 * 110.34918 * 219.41358 * 23 6 5 40 40 H 1.09006 * 110.34390 * 341.71649 * 23 6 5 41 41 H 1.08994 * 108.48652 * 28.43340 * 24 23 6 42 42 H 1.09001 * 108.48382 * 146.01984 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8949 1.0271 0.0000 4 6 2.0364 -0.7151 1.2249 5 6 3.4078 -0.2580 1.7743 6 7 4.5044 -0.0877 0.8069 7 6 5.7973 0.0354 1.4932 8 7 6.8224 0.4512 0.5327 9 7 7.6235 -0.3993 -0.2416 10 6 8.4234 0.3567 -0.9746 11 6 9.3856 -0.1041 -1.8830 12 1 9.9900 0.6016 -2.4336 13 6 9.5635 -1.4794 -2.0769 14 7 8.8312 -2.3340 -1.4105 15 14 10.8467 -2.0937 -3.2875 16 1 12.1891 -1.6134 -2.8721 17 1 10.8365 -3.5786 -3.3088 18 1 10.5344 -1.5775 -4.6444 19 7 8.1455 1.6829 -0.6882 20 6 8.8079 2.8460 -1.2837 21 6 7.1626 1.7207 0.2325 22 16 6.4705 3.1336 0.9074 23 6 4.5296 -1.1565 -0.1494 24 6 3.8699 -0.5823 -1.3960 25 16 2.1493 -0.8773 -1.5062 26 1 -0.3634 -1.0276 0.0039 27 1 -0.3633 0.5172 0.8880 28 1 -0.3633 0.5105 -0.8920 29 1 1.2977 -0.5923 2.0169 30 1 2.1040 -1.7776 0.9917 31 1 3.7291 -0.9865 2.5186 32 1 3.2625 0.6937 2.2853 33 1 6.0727 -0.9270 1.9246 34 1 5.7188 0.7796 2.2857 35 1 8.9541 -3.2867 -1.5451 36 1 9.6737 3.1194 -0.6807 37 1 9.1322 2.6011 -2.2950 38 1 8.1105 3.6830 -1.3185 39 1 5.5575 -1.4483 -0.3647 40 1 3.9616 -2.0100 0.2211 41 1 4.0376 0.4945 -1.4109 42 1 4.3497 -1.0178 -2.2726 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794644756.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:22 Heat of formation + Delta-G solvation = 74.574031 kcal Electronic energy + Delta-G solvation = -24635.466110 eV Core-core repulsion = 21290.096069 eV Total energy + Delta-G solvation = -3345.370041 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.66523 -39.78654 -36.46251 -35.77000 -35.17168 -32.89654 -32.01350 -30.39077 -28.63935 -28.29801 -25.94678 -24.96006 -23.81449 -23.05236 -22.60979 -20.94209 -19.49329 -18.51358 -18.19589 -17.46811 -17.34088 -16.92972 -16.61010 -16.32435 -15.84384 -15.81015 -15.48716 -14.96283 -14.68649 -14.22162 -14.19187 -13.76499 -13.68114 -13.56946 -13.48195 -13.16926 -13.04057 -12.98214 -12.69889 -12.45317 -12.32288 -12.11993 -12.05940 -11.85785 -11.74471 -11.64473 -11.34250 -10.93346 -10.74998 -10.64879 -9.49909 -8.82639 -8.70050 -8.65527 -8.56003 -6.98421 0.51872 0.81529 0.83987 1.27554 1.43375 1.52586 1.56374 1.64390 1.84380 2.11053 2.39506 2.80274 3.07611 3.49953 3.59107 3.86752 3.90970 3.96128 4.05969 4.09136 4.19136 4.26135 4.36480 4.43534 4.44314 4.53049 4.68209 4.72162 4.75677 4.82011 4.88371 4.89513 4.91745 4.98958 5.07849 5.20190 5.26387 5.28022 5.67066 5.79569 5.97580 6.18759 6.46552 6.55536 7.31082 8.21749 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.012794 B = 0.004552 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.939291 B = 6149.743247 C = 7441.213300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.028 4.028 3 H 0.076 0.924 4 C -0.108 4.108 5 C 0.056 3.944 6 N -0.553 5.553 7 C 0.327 3.673 8 N -0.373 5.373 9 N -0.367 5.367 10 C 0.355 3.645 11 C -0.452 4.452 12 H 0.117 0.883 13 C 0.039 3.961 14 N -0.773 5.773 15 Si 1.002 2.998 16 H -0.254 1.254 17 H -0.272 1.272 18 H -0.256 1.256 19 N -0.518 5.518 20 C 0.095 3.905 21 C 0.468 3.532 22 S -0.737 6.737 23 C 0.064 3.936 24 C -0.084 4.084 25 S -0.260 6.260 26 H 0.070 0.930 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.115 0.885 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.292 0.708 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.645 -2.846 1.029 8.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.156 4.156 3 H 0.094 0.906 4 C -0.148 4.148 5 C -0.071 4.071 6 N -0.279 5.279 7 C 0.116 3.884 8 N -0.159 5.159 9 N -0.200 5.200 10 C 0.107 3.893 11 C -0.493 4.493 12 H 0.134 0.866 13 C -0.184 4.184 14 N -0.398 5.398 15 Si 0.821 3.179 16 H -0.178 1.178 17 H -0.197 1.197 18 H -0.180 1.180 19 N -0.219 5.219 20 C -0.046 4.046 21 C 0.098 3.902 22 S -0.614 6.614 23 C -0.067 4.067 24 C -0.234 4.234 25 S -0.033 6.033 26 H 0.089 0.911 27 H 0.112 0.888 28 H 0.079 0.921 29 H 0.133 0.867 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.129 0.871 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.080 -3.389 0.732 9.719 hybrid contribution 2.258 -0.140 0.159 2.268 sum -6.822 -3.528 0.891 7.732 Atomic orbital electron populations 1.21677 0.89739 1.03470 1.03652 1.23109 1.00008 1.00311 0.92159 0.90579 1.21756 0.95051 1.00286 0.97658 1.22388 0.89683 1.02157 0.92862 1.61160 1.03312 1.45276 1.18170 1.21810 0.80001 1.00385 0.86238 1.49411 1.30057 1.02375 1.34031 1.79205 1.14065 1.09594 1.17163 1.21631 0.95225 0.77328 0.95136 1.18872 1.16262 0.94137 1.20051 0.86563 1.26794 0.98337 0.95685 0.97603 1.69931 1.32658 1.04478 1.32697 0.84918 0.77599 0.77549 0.77817 1.17758 1.19698 1.17975 1.46244 1.31373 1.09305 1.34991 1.22017 0.97833 0.85194 0.99584 1.22830 0.87739 0.91322 0.88359 1.92641 1.72837 1.24191 1.71703 1.21716 1.01397 0.92159 0.91450 1.22327 0.96364 1.03378 1.01349 1.86050 1.03971 1.73539 1.39721 0.91134 0.88788 0.92061 0.86680 0.91185 0.92778 0.90402 0.90861 0.87148 0.89761 0.89951 0.87636 0.89438 0.90905 0.91184 0.92288 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 9.02 71.98 0.65 -1.48 16 2 C -0.03 -0.65 3.03 29.82 0.09 -0.56 16 3 H 0.08 2.11 8.06 -2.38 -0.02 2.09 16 4 C -0.11 -2.19 4.61 30.38 0.14 -2.05 16 5 C 0.06 1.39 5.21 86.80 0.45 1.84 16 6 N -0.55 -18.68 4.11 -914.83 -3.76 -22.45 16 7 C 0.33 12.27 5.64 170.81 0.96 13.23 16 8 N -0.37 -16.99 3.46 -359.73 -1.25 -18.24 16 9 N -0.37 -18.22 9.31 -55.17 -0.51 -18.74 16 10 C 0.35 17.14 7.50 133.52 1.00 18.14 16 11 C -0.45 -20.30 8.98 23.16 0.21 -20.09 16 12 H 0.12 4.58 7.11 -2.91 -0.02 4.56 16 13 C 0.04 1.69 5.50 85.28 0.47 2.16 16 14 N -0.77 -36.19 11.90 21.84 0.26 -35.93 16 15 Si 1.00 32.20 29.56 68.60 2.03 34.22 16 16 H -0.25 -7.80 7.11 99.48 0.71 -7.09 16 17 H -0.27 -8.60 7.11 99.48 0.71 -7.90 16 18 H -0.26 -7.94 7.11 99.48 0.71 -7.24 16 19 N -0.52 -23.31 3.17 -548.30 -1.74 -25.05 16 20 C 0.10 3.33 10.65 127.77 1.36 4.69 16 21 C 0.47 22.27 7.84 179.06 1.40 23.68 16 22 S -0.74 -36.38 29.50 -56.49 -1.67 -38.04 16 23 C 0.06 2.25 5.30 86.71 0.46 2.71 16 24 C -0.08 -3.04 5.60 71.74 0.40 -2.64 16 25 S -0.26 -7.70 21.19 -56.49 -1.20 -8.90 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.09 1.16 8.08 -2.39 -0.02 1.14 16 28 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.12 1.60 7.68 -2.39 -0.02 1.58 16 30 H 0.07 1.47 6.79 -2.39 -0.02 1.46 16 31 H 0.05 1.17 7.95 -2.39 -0.02 1.16 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.07 2.61 8.11 -2.39 -0.02 2.59 16 34 H 0.11 4.10 7.58 -2.39 -0.02 4.08 16 35 H 0.29 12.44 8.30 -92.71 -0.77 11.67 16 36 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.11 3.17 7.32 -2.39 -0.02 3.15 16 38 H 0.09 3.09 7.61 -2.39 -0.02 3.08 16 39 H 0.07 3.15 5.91 -2.39 -0.01 3.13 16 40 H 0.07 2.22 6.32 -2.38 -0.02 2.20 16 41 H 0.06 2.47 7.81 -4.31 -0.03 2.44 16 42 H 0.07 2.91 8.14 -4.40 -0.04 2.87 16 Total: -1.00 -62.65 357.71 0.76 -61.89 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: 0.99 Total: 31.59 kcal Atomic # 6 Polarization: 32.03 SS G_CDS: 7.60 Total: 39.63 kcal Atomic # 7 Polarization: -113.40 SS G_CDS: -7.00 Total: -120.40 kcal Atomic # 14 Polarization: 32.20 SS G_CDS: 2.03 Total: 34.22 kcal Atomic # 16 Polarization: -44.08 SS G_CDS: -2.86 Total: -46.94 kcal Total: -62.65 0.76 -61.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794644756.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.465 kcal (2) G-P(sol) polarization free energy of solvation -62.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds