Wall clock time and date at job start Tue Mar 31 2020 15:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 108.40572 * 2 1 4 4 C 1.52413 * 108.47109 * 242.40331 * 2 1 3 5 5 C 1.49449 * 105.43190 * 148.11203 * 4 2 1 6 6 N 1.47584 * 110.65287 * 98.60723 * 5 4 2 7 7 C 1.46898 * 110.99754 * 187.40954 * 6 5 4 8 8 N 1.46501 * 109.47023 * 200.46108 * 7 6 5 9 9 N 1.40158 * 126.14453 * 90.02503 * 8 7 6 10 10 C 1.32249 * 107.75884 * 179.97438 * 9 8 7 11 11 C 1.40118 * 125.92640 * 179.97438 * 10 9 8 12 12 H 1.07990 * 119.99745 * 180.02562 * 11 10 9 13 13 C 1.40044 * 119.99837 * 0.02624 * 11 10 9 14 14 N 1.30797 * 119.99967 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99503 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47394 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46812 * 120.00136 * 15 13 11 18 18 H 1.48501 * 109.46739 * 239.99875 * 15 13 11 19 19 N 1.38497 * 108.14396 * 0.02562 * 10 9 8 20 20 C 1.46507 * 125.83198 * 180.02562 * 19 10 9 21 21 C 1.34733 * 108.33389 * 359.75848 * 19 10 9 22 22 S 1.71196 * 125.97391 * 180.24771 * 21 19 10 23 23 C 1.48961 * 118.78667 * 317.87041 * 6 5 4 24 24 C 1.50349 * 116.92647 * 313.49852 * 23 6 5 25 25 S 1.74758 * 108.47352 * 117.44551 * 2 1 3 26 26 H 1.08996 * 109.47364 * 177.59054 * 1 2 3 27 27 H 1.09001 * 109.47149 * 297.59648 * 1 2 3 28 28 H 1.09009 * 109.46817 * 57.59556 * 1 2 3 29 29 H 1.09002 * 110.27140 * 267.13077 * 4 2 1 30 30 H 1.09000 * 110.27140 * 29.09347 * 4 2 1 31 31 H 1.08999 * 109.22296 * 219.18480 * 5 4 2 32 32 H 1.09002 * 109.22485 * 338.54005 * 5 4 2 33 33 H 1.08993 * 109.47498 * 320.46370 * 7 6 5 34 34 H 1.09006 * 109.46800 * 80.46287 * 7 6 5 35 35 H 0.96997 * 119.99283 * 180.02562 * 14 13 11 36 36 H 1.08996 * 109.46492 * 90.00548 * 20 19 10 37 37 H 1.08996 * 109.46831 * 209.99847 * 20 19 10 38 38 H 1.08998 * 109.47061 * 330.00101 * 20 19 10 39 39 H 1.08999 * 107.95790 * 191.62178 * 23 6 5 40 40 H 1.08993 * 107.92865 * 75.35360 * 23 6 5 41 41 H 1.08998 * 109.58723 * 330.95120 * 24 23 6 42 42 H 1.08996 * 109.58792 * 210.51853 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8741 1.0342 0.0000 4 6 2.0129 -0.6697 -1.2811 5 6 3.2990 0.0096 -1.6245 6 7 4.4500 -0.7956 -1.1716 7 6 5.7089 -0.0588 -1.3456 8 7 6.8289 -1.0030 -1.3633 9 7 7.3623 -1.6316 -2.4968 10 6 8.3584 -2.4047 -2.0980 11 6 9.1571 -3.2076 -2.9231 12 1 9.9482 -3.8042 -2.4937 13 6 8.9292 -3.2365 -4.3046 14 7 7.9713 -2.5135 -4.8247 15 14 9.9936 -4.3075 -5.4044 16 1 10.9986 -5.0218 -4.5770 17 1 9.1390 -5.2972 -6.1083 18 1 10.6886 -3.4552 -6.4023 19 7 8.4745 -2.2838 -0.7232 20 6 9.4556 -2.9732 0.1186 21 6 7.5348 -1.4194 -0.2930 22 16 7.2798 -0.9369 1.3297 23 6 4.3903 -1.4415 0.1694 24 6 3.9190 -0.5895 1.3150 25 16 2.0837 -0.7640 1.4710 26 1 -0.3634 -1.0267 -0.0432 27 1 -0.3633 0.4761 0.9108 28 1 -0.3633 0.5508 -0.8677 29 1 2.1811 -1.7331 -1.1111 30 1 1.2851 -0.5261 -2.0798 31 1 3.3548 0.1479 -2.7042 32 1 3.3320 0.9836 -1.1364 33 1 5.6815 0.4902 -2.2868 34 1 5.8370 0.6415 -0.5201 35 1 7.8133 -2.5339 -5.7815 36 1 10.3544 -2.3625 0.2033 37 1 9.0327 -3.1367 1.1098 38 1 9.7094 -3.9331 -0.3310 39 1 5.3883 -1.8072 0.4109 40 1 3.7279 -2.3039 0.0972 41 1 4.1718 0.4532 1.1232 42 1 4.3971 -0.9200 2.2371 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794644757.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:31 Heat of formation + Delta-G solvation = 91.491539 kcal Electronic energy + Delta-G solvation = -24497.073841 eV Core-core repulsion = 21152.437398 eV Total energy + Delta-G solvation = -3344.636443 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.96982 -38.33178 -35.38009 -34.09444 -33.67201 -31.06902 -30.74737 -29.19414 -27.12707 -26.62774 -24.57555 -23.65999 -22.55449 -21.47311 -20.97701 -19.79413 -17.84659 -17.11302 -16.71414 -16.08912 -15.79569 -15.37224 -15.09772 -14.87390 -14.59433 -14.52345 -14.27264 -13.53465 -13.50662 -13.03987 -12.63525 -12.39262 -12.28394 -12.18915 -12.04482 -11.84165 -11.81024 -11.56525 -11.55372 -11.16524 -10.95241 -10.86916 -10.72799 -10.56114 -10.40468 -10.08396 -9.60017 -9.58711 -9.24396 -8.89282 -8.12438 -7.49098 -7.08503 -6.87869 -6.69370 -5.17804 1.92555 2.22184 2.46940 2.67710 2.75056 2.89324 2.94367 3.25441 3.49446 3.61638 3.89311 4.13442 4.55846 4.70053 4.81189 4.98045 5.14944 5.25348 5.30848 5.38274 5.47387 5.49023 5.58462 5.61513 5.65976 5.72702 5.79029 5.80472 5.95883 5.97377 6.04480 6.13369 6.18229 6.28524 6.48981 6.59744 6.77079 6.94414 7.12418 7.31480 7.53893 7.74600 8.18685 8.31586 9.09658 9.89933 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.016834 B = 0.003888 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.882007 B = 7199.894029 C = 8420.680006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.088 4.088 3 H 0.080 0.920 4 C -0.115 4.115 5 C 0.076 3.924 6 N -0.574 5.574 7 C 0.330 3.670 8 N -0.367 5.367 9 N -0.329 5.329 10 C 0.371 3.629 11 C -0.438 4.438 12 H 0.098 0.902 13 C 0.076 3.924 14 N -0.735 5.735 15 Si 0.928 3.072 16 H -0.258 1.258 17 H -0.270 1.270 18 H -0.270 1.270 19 N -0.512 5.512 20 C 0.099 3.901 21 C 0.459 3.541 22 S -0.711 6.711 23 C 0.050 3.950 24 C -0.065 4.065 25 S -0.260 6.260 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.033 0.967 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.285 0.715 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.113 0.887 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.874 1.879 1.400 7.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.218 4.218 3 H 0.098 0.902 4 C -0.155 4.155 5 C -0.051 4.051 6 N -0.302 5.302 7 C 0.118 3.882 8 N -0.153 5.153 9 N -0.161 5.161 10 C 0.123 3.877 11 C -0.479 4.479 12 H 0.116 0.884 13 C -0.151 4.151 14 N -0.359 5.359 15 Si 0.751 3.249 16 H -0.182 1.182 17 H -0.195 1.195 18 H -0.195 1.195 19 N -0.213 5.213 20 C -0.044 4.044 21 C 0.089 3.911 22 S -0.586 6.586 23 C -0.079 4.079 24 C -0.215 4.215 25 S -0.033 6.033 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.131 0.869 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.391 1.845 1.860 8.791 hybrid contribution 1.659 0.303 -1.279 2.117 sum -6.732 2.148 0.581 7.090 Atomic orbital electron populations 1.21658 0.92171 1.02790 1.02241 1.22520 1.00343 1.01925 0.96971 0.90153 1.21362 0.96348 1.01867 0.95923 1.21569 0.88875 0.93888 1.00767 1.60483 1.01579 1.40094 1.28001 1.21531 0.78564 0.85688 1.02411 1.49288 1.25434 1.35852 1.04681 1.79452 1.16617 1.20546 0.99457 1.21355 0.93462 0.94649 0.78281 1.18397 1.15124 1.23486 0.90913 0.88416 1.25841 0.95389 0.95548 0.98285 1.69884 1.22995 1.28881 1.14162 0.85913 0.79839 0.79582 0.79521 1.18168 1.19465 1.19500 1.45986 1.29074 1.37621 1.08594 1.21775 0.90510 0.96851 0.95231 1.22944 0.86501 0.88167 0.93467 1.92703 1.87306 1.78604 1.00023 1.22524 1.05858 0.95948 0.83563 1.23838 0.89606 1.03773 1.04241 1.86271 1.09555 1.79725 1.27794 0.91793 0.92032 0.91540 0.89006 0.89926 0.90165 0.94909 0.88154 0.90799 0.90367 0.91461 0.89162 0.89694 0.86909 0.91082 0.90362 0.86481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 8.82 37.16 0.33 -0.96 16 2 C -0.09 -1.05 2.40 -27.03 -0.06 -1.11 16 3 H 0.08 0.96 6.89 -48.62 -0.33 0.62 16 4 C -0.12 -1.40 5.20 -28.78 -0.15 -1.55 16 5 C 0.08 1.02 5.14 -5.20 -0.03 1.00 16 6 N -0.57 -9.80 4.55 -239.98 -1.09 -10.89 16 7 C 0.33 6.14 6.08 -63.32 -0.38 5.76 16 8 N -0.37 -8.21 3.61 -65.05 -0.23 -8.45 16 9 N -0.33 -8.26 10.77 31.21 0.34 -7.92 16 10 C 0.37 8.96 7.50 -155.27 -1.16 7.80 16 11 C -0.44 -10.03 8.98 -38.20 -0.34 -10.37 16 12 H 0.10 2.01 7.11 -52.49 -0.37 1.64 16 13 C 0.08 1.69 5.50 -17.32 -0.10 1.59 16 14 N -0.74 -17.55 11.90 55.55 0.66 -16.89 16 15 Si 0.93 16.36 29.56 -169.99 -5.02 11.34 16 16 H -0.26 -4.40 7.11 56.52 0.40 -4.00 16 17 H -0.27 -4.76 7.11 56.52 0.40 -4.35 16 18 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 19 N -0.51 -11.25 3.17 -124.65 -0.39 -11.64 16 20 C 0.10 1.71 10.64 59.85 0.64 2.35 16 21 C 0.46 10.38 6.68 -86.92 -0.58 9.80 16 22 S -0.71 -15.94 26.62 -107.50 -2.86 -18.80 16 23 C 0.05 0.87 4.49 -4.00 -0.02 0.86 16 24 C -0.07 -1.03 5.83 35.84 0.21 -0.82 16 25 S -0.26 -3.68 20.94 -107.50 -2.25 -5.94 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 28 H 0.07 0.55 8.09 -51.92 -0.42 0.13 16 29 H 0.09 1.31 6.63 -51.93 -0.34 0.96 16 30 H 0.08 0.84 7.78 -51.93 -0.40 0.44 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.03 0.42 6.74 -51.93 -0.35 0.07 16 33 H 0.10 1.77 7.93 -51.93 -0.41 1.36 16 34 H 0.07 1.36 7.42 -51.93 -0.39 0.97 16 35 H 0.29 6.15 8.30 -40.82 -0.34 5.81 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.53 7.62 -51.93 -0.40 1.13 16 38 H 0.08 1.30 7.32 -51.93 -0.38 0.92 16 39 H 0.11 2.34 3.63 -43.23 -0.16 2.19 16 40 H 0.07 1.27 6.74 -51.93 -0.35 0.92 16 41 H 0.08 1.25 7.94 -51.93 -0.41 0.83 16 42 H 0.12 1.99 8.14 -51.93 -0.42 1.56 16 LS Contribution 350.55 15.07 5.28 5.28 Total: -1.00 -27.83 350.55 -13.20 -41.03 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -5.97 Total: 8.53 kcal Atomic # 6 Polarization: 16.00 SS G_CDS: -1.65 Total: 14.34 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.72 Total: -55.80 kcal Atomic # 14 Polarization: 16.36 SS G_CDS: -5.02 Total: 11.34 kcal Atomic # 16 Polarization: -19.62 SS G_CDS: -5.11 Total: -24.73 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.83 -13.20 -41.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794644757.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.524 kcal (2) G-P(sol) polarization free energy of solvation -27.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds