Wall clock time and date at job start Tue Mar 31 2020 15:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 108.40572 * 2 1 4 4 C 1.52413 * 108.47109 * 242.40331 * 2 1 3 5 5 C 1.49449 * 105.43190 * 148.11203 * 4 2 1 6 6 N 1.47584 * 110.65287 * 98.60723 * 5 4 2 7 7 C 1.46898 * 110.99754 * 187.40954 * 6 5 4 8 8 N 1.46501 * 109.47023 * 200.46108 * 7 6 5 9 9 N 1.40158 * 126.14453 * 90.02503 * 8 7 6 10 10 C 1.32249 * 107.75884 * 179.97438 * 9 8 7 11 11 C 1.40118 * 125.92640 * 179.97438 * 10 9 8 12 12 H 1.07990 * 119.99745 * 180.02562 * 11 10 9 13 13 C 1.40044 * 119.99837 * 0.02624 * 11 10 9 14 14 N 1.30797 * 119.99967 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99503 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47394 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46812 * 120.00136 * 15 13 11 18 18 H 1.48501 * 109.46739 * 239.99875 * 15 13 11 19 19 N 1.38497 * 108.14396 * 0.02562 * 10 9 8 20 20 C 1.46507 * 125.83198 * 180.02562 * 19 10 9 21 21 C 1.34733 * 108.33389 * 359.75848 * 19 10 9 22 22 S 1.71196 * 125.97391 * 180.24771 * 21 19 10 23 23 C 1.48961 * 118.78667 * 317.87041 * 6 5 4 24 24 C 1.50349 * 116.92647 * 313.49852 * 23 6 5 25 25 S 1.74758 * 108.47352 * 117.44551 * 2 1 3 26 26 H 1.08996 * 109.47364 * 177.59054 * 1 2 3 27 27 H 1.09001 * 109.47149 * 297.59648 * 1 2 3 28 28 H 1.09009 * 109.46817 * 57.59556 * 1 2 3 29 29 H 1.09002 * 110.27140 * 267.13077 * 4 2 1 30 30 H 1.09000 * 110.27140 * 29.09347 * 4 2 1 31 31 H 1.08999 * 109.22296 * 219.18480 * 5 4 2 32 32 H 1.09002 * 109.22485 * 338.54005 * 5 4 2 33 33 H 1.08993 * 109.47498 * 320.46370 * 7 6 5 34 34 H 1.09006 * 109.46800 * 80.46287 * 7 6 5 35 35 H 0.96997 * 119.99283 * 180.02562 * 14 13 11 36 36 H 1.08996 * 109.46492 * 90.00548 * 20 19 10 37 37 H 1.08996 * 109.46831 * 209.99847 * 20 19 10 38 38 H 1.08998 * 109.47061 * 330.00101 * 20 19 10 39 39 H 1.08999 * 107.95790 * 191.62178 * 23 6 5 40 40 H 1.08993 * 107.92865 * 75.35360 * 23 6 5 41 41 H 1.08998 * 109.58723 * 330.95120 * 24 23 6 42 42 H 1.08996 * 109.58792 * 210.51853 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8741 1.0342 0.0000 4 6 2.0129 -0.6697 -1.2811 5 6 3.2990 0.0096 -1.6245 6 7 4.4500 -0.7956 -1.1716 7 6 5.7089 -0.0588 -1.3456 8 7 6.8289 -1.0030 -1.3633 9 7 7.3623 -1.6316 -2.4968 10 6 8.3584 -2.4047 -2.0980 11 6 9.1571 -3.2076 -2.9231 12 1 9.9482 -3.8042 -2.4937 13 6 8.9292 -3.2365 -4.3046 14 7 7.9713 -2.5135 -4.8247 15 14 9.9936 -4.3075 -5.4044 16 1 10.9986 -5.0218 -4.5770 17 1 9.1390 -5.2972 -6.1083 18 1 10.6886 -3.4552 -6.4023 19 7 8.4745 -2.2838 -0.7232 20 6 9.4556 -2.9732 0.1186 21 6 7.5348 -1.4194 -0.2930 22 16 7.2798 -0.9369 1.3297 23 6 4.3903 -1.4415 0.1694 24 6 3.9190 -0.5895 1.3150 25 16 2.0837 -0.7640 1.4710 26 1 -0.3634 -1.0267 -0.0432 27 1 -0.3633 0.4761 0.9108 28 1 -0.3633 0.5508 -0.8677 29 1 2.1811 -1.7331 -1.1111 30 1 1.2851 -0.5261 -2.0798 31 1 3.3548 0.1479 -2.7042 32 1 3.3320 0.9836 -1.1364 33 1 5.6815 0.4902 -2.2868 34 1 5.8370 0.6415 -0.5201 35 1 7.8133 -2.5339 -5.7815 36 1 10.3544 -2.3625 0.2033 37 1 9.0327 -3.1367 1.1098 38 1 9.7094 -3.9331 -0.3310 39 1 5.3883 -1.8072 0.4109 40 1 3.7279 -2.3039 0.0972 41 1 4.1718 0.4532 1.1232 42 1 4.3971 -0.9200 2.2371 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794644757.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:29 Heat of formation + Delta-G solvation = 77.749034 kcal Electronic energy + Delta-G solvation = -24497.669761 eV Core-core repulsion = 21152.437398 eV Total energy + Delta-G solvation = -3345.232363 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.109 amu Computer time = 3.70 seconds Orbital eigenvalues (eV) -42.66548 -39.59462 -36.69667 -35.73674 -35.10512 -32.62414 -32.13105 -30.47658 -28.54921 -28.29097 -26.05212 -24.82887 -23.75840 -22.97469 -22.66531 -21.05395 -19.50646 -18.38521 -18.33371 -17.53434 -17.41117 -16.77779 -16.50023 -16.29674 -16.07102 -15.71584 -15.44133 -15.02557 -14.60920 -14.37457 -13.90563 -13.80378 -13.72719 -13.43913 -13.27567 -13.22467 -13.06872 -13.00868 -12.71826 -12.52766 -12.45519 -12.13015 -11.97348 -11.93633 -11.75641 -11.50920 -11.36104 -10.89349 -10.75477 -10.59102 -9.45474 -8.78071 -8.67522 -8.62830 -8.42744 -6.95897 0.51339 0.75673 0.80689 1.28083 1.45577 1.55657 1.62187 1.64419 1.86432 2.12660 2.38720 2.65768 3.10311 3.52995 3.60661 3.72698 3.86453 4.02248 4.05712 4.14679 4.18272 4.37497 4.38959 4.42508 4.45577 4.56658 4.61810 4.70948 4.78501 4.83525 4.87889 4.91821 4.98879 5.04015 5.10705 5.19420 5.22961 5.27076 5.71672 5.86000 5.93690 6.20724 6.48726 6.58222 7.34047 8.25704 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.016834 B = 0.003888 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.882007 B = 7199.894029 C = 8420.680006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.084 4.084 3 H 0.085 0.915 4 C -0.108 4.108 5 C 0.075 3.925 6 N -0.583 5.583 7 C 0.328 3.672 8 N -0.368 5.368 9 N -0.364 5.364 10 C 0.351 3.649 11 C -0.453 4.453 12 H 0.118 0.882 13 C 0.036 3.964 14 N -0.774 5.774 15 Si 1.005 2.995 16 H -0.244 1.244 17 H -0.269 1.269 18 H -0.268 1.268 19 N -0.516 5.516 20 C 0.095 3.905 21 C 0.449 3.551 22 S -0.722 6.722 23 C 0.066 3.934 24 C -0.055 4.055 25 S -0.266 6.266 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.107 0.893 34 H 0.074 0.926 35 H 0.291 0.709 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.188 1.629 0.433 7.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.214 4.214 3 H 0.104 0.896 4 C -0.148 4.148 5 C -0.051 4.051 6 N -0.311 5.311 7 C 0.117 3.883 8 N -0.154 5.154 9 N -0.196 5.196 10 C 0.103 3.897 11 C -0.494 4.494 12 H 0.136 0.864 13 C -0.188 4.188 14 N -0.399 5.399 15 Si 0.824 3.176 16 H -0.167 1.167 17 H -0.194 1.194 18 H -0.193 1.193 19 N -0.216 5.216 20 C -0.047 4.047 21 C 0.078 3.922 22 S -0.598 6.598 23 C -0.063 4.063 24 C -0.204 4.204 25 S -0.039 6.039 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.129 0.871 31 H 0.106 0.894 32 H 0.064 0.936 33 H 0.125 0.875 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.123 0.877 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.718 1.603 0.927 8.913 hybrid contribution 1.696 0.399 -0.987 2.002 sum -7.022 2.002 -0.060 7.302 Atomic orbital electron populations 1.21648 0.90164 1.03131 1.03435 1.22599 1.01833 1.01591 0.95338 0.89624 1.21326 0.96235 1.00273 0.96935 1.21746 0.88052 0.94089 1.01238 1.60481 1.02117 1.40799 1.27721 1.21663 0.78619 0.85305 1.02679 1.49580 1.25973 1.35843 1.04017 1.79339 1.17700 1.21652 1.00930 1.21715 0.93732 0.94989 0.79274 1.18939 1.15438 1.23466 0.91574 0.86429 1.26871 0.96243 0.96337 0.99301 1.69978 1.24667 1.30360 1.14920 0.84782 0.78004 0.77494 0.77293 1.16721 1.19421 1.19272 1.46270 1.29458 1.37515 1.08407 1.22036 0.90077 0.97756 0.94802 1.23055 0.86975 0.88630 0.93517 1.92605 1.87758 1.79118 1.00277 1.22239 1.03618 0.96060 0.84393 1.23555 0.91285 1.02941 1.02656 1.86318 1.07526 1.80326 1.29774 0.91979 0.91934 0.89103 0.91149 0.87104 0.89394 0.93629 0.87463 0.90848 0.89793 0.90035 0.89113 0.87667 0.90136 0.92027 0.90667 0.88118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 8.82 71.98 0.64 -1.49 16 2 C -0.08 -1.83 2.40 30.40 0.07 -1.76 16 3 H 0.09 1.83 6.89 -4.49 -0.03 1.80 16 4 C -0.11 -2.43 5.20 29.26 0.15 -2.28 16 5 C 0.07 1.91 5.14 85.04 0.44 2.35 16 6 N -0.58 -20.05 4.55 -913.15 -4.16 -24.21 16 7 C 0.33 12.42 6.08 170.81 1.04 13.46 16 8 N -0.37 -16.85 3.61 -359.72 -1.30 -18.15 16 9 N -0.36 -18.61 10.77 -55.16 -0.59 -19.21 16 10 C 0.35 17.12 7.50 133.52 1.00 18.12 16 11 C -0.45 -20.50 8.98 23.16 0.21 -20.29 16 12 H 0.12 4.65 7.11 -2.92 -0.02 4.63 16 13 C 0.04 1.55 5.50 85.28 0.47 2.02 16 14 N -0.77 -37.14 11.90 21.85 0.26 -36.88 16 15 Si 1.01 32.34 29.56 68.60 2.03 34.37 16 16 H -0.24 -7.26 7.11 99.48 0.71 -6.55 16 17 H -0.27 -8.59 7.11 99.48 0.71 -7.89 16 18 H -0.27 -8.47 7.11 99.48 0.71 -7.77 16 19 N -0.52 -22.83 3.17 -548.29 -1.74 -24.56 16 20 C 0.09 3.21 10.64 127.77 1.36 4.57 16 21 C 0.45 20.70 6.68 179.06 1.20 21.89 16 22 S -0.72 -32.90 26.62 -56.49 -1.50 -34.40 16 23 C 0.07 2.37 4.49 85.05 0.38 2.75 16 24 C -0.05 -1.76 5.83 71.13 0.41 -1.34 16 25 S -0.27 -7.37 20.94 -56.49 -1.18 -8.56 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.06 8.13 -2.39 -0.02 1.05 16 28 H 0.09 1.14 8.09 -2.38 -0.02 1.12 16 29 H 0.07 1.95 6.63 -2.39 -0.02 1.93 16 30 H 0.11 1.91 7.78 -2.39 -0.02 1.89 16 31 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.05 1.08 6.74 -2.39 -0.02 1.06 16 33 H 0.11 3.83 7.93 -2.39 -0.02 3.81 16 34 H 0.07 2.76 7.42 -2.38 -0.02 2.74 16 35 H 0.29 12.59 8.30 -92.71 -0.77 11.82 16 36 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.09 3.05 7.62 -2.39 -0.02 3.03 16 38 H 0.10 3.08 7.32 -2.39 -0.02 3.06 16 39 H 0.08 3.46 3.63 -7.92 -0.03 3.43 16 40 H 0.06 2.28 6.74 -2.39 -0.02 2.26 16 41 H 0.07 2.41 7.94 -2.39 -0.02 2.40 16 42 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 Total: -1.00 -60.72 350.55 0.18 -60.55 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: 1.00 Total: 33.04 kcal Atomic # 6 Polarization: 30.64 SS G_CDS: 7.37 Total: 38.01 kcal Atomic # 7 Polarization: -115.48 SS G_CDS: -7.53 Total: -123.01 kcal Atomic # 14 Polarization: 32.34 SS G_CDS: 2.03 Total: 34.37 kcal Atomic # 16 Polarization: -40.27 SS G_CDS: -2.69 Total: -42.96 kcal Total: -60.72 0.18 -60.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794644757.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.294 kcal (2) G-P(sol) polarization free energy of solvation -60.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.71 seconds