Wall clock time and date at job start Tue Mar 31 2020 16:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08990 * 108.22916 * 2 1 4 4 C 1.45857 * 108.32005 * 117.24462 * 2 1 3 5 5 S 1.83750 * 109.14112 * 185.71829 * 4 2 1 6 6 C 1.80174 * 102.69399 * 292.59812 * 5 4 2 7 7 C 1.53613 * 113.04038 * 84.92526 * 6 5 4 8 8 N 1.46862 * 116.10986 * 315.59110 * 7 6 5 9 9 C 1.46897 * 110.99879 * 194.53148 * 8 7 6 10 10 N 1.46503 * 109.47069 * 293.95101 * 9 8 7 11 11 N 1.40159 * 126.14893 * 269.69412 * 10 9 8 12 12 C 1.32241 * 107.75948 * 179.88790 * 11 10 9 13 13 C 1.40116 * 125.92658 * 180.13390 * 12 11 10 14 14 H 1.07997 * 120.00016 * 174.61756 * 13 12 11 15 15 C 1.40043 * 119.99979 * 354.62125 * 13 12 11 16 16 N 1.30793 * 119.99956 * 6.07731 * 15 13 12 17 17 Si 1.86794 * 119.99846 * 186.08056 * 15 13 12 18 18 H 1.48501 * 109.47334 * 94.98118 * 17 15 13 19 19 H 1.48498 * 109.47082 * 214.98032 * 17 15 13 20 20 H 1.48499 * 109.47428 * 334.98124 * 17 15 13 21 21 N 1.38497 * 108.14291 * 0.36892 * 12 11 10 22 22 C 1.46511 * 125.83081 * 179.72513 * 21 12 11 23 23 C 1.34721 * 108.33330 * 359.76546 * 21 12 11 24 24 S 1.71206 * 125.97289 * 179.97438 * 23 21 12 25 25 C 1.45539 * 110.42893 * 318.08176 * 8 7 6 26 26 H 1.08996 * 109.46797 * 302.76238 * 1 2 3 27 27 H 1.08996 * 109.46870 * 182.75865 * 1 2 3 28 28 H 1.08999 * 109.46848 * 62.75787 * 1 2 3 29 29 H 1.09001 * 109.52660 * 305.61575 * 4 2 1 30 30 H 1.09003 * 109.53180 * 65.82273 * 4 2 1 31 31 H 1.09001 * 108.77277 * 205.84454 * 6 5 4 32 32 H 1.09004 * 108.76997 * 324.11759 * 6 5 4 33 33 H 1.08998 * 108.15253 * 77.31591 * 7 6 5 34 34 H 1.08997 * 108.14970 * 193.86923 * 7 6 5 35 35 H 1.08993 * 109.46863 * 53.95526 * 9 8 7 36 36 H 1.09004 * 109.47084 * 173.95576 * 9 8 7 37 37 H 0.97003 * 119.99978 * 180.02562 * 16 15 13 38 38 H 1.08998 * 109.46705 * 270.02049 * 22 21 12 39 39 H 1.08991 * 109.47093 * 30.01997 * 22 21 12 40 40 H 1.09000 * 109.46852 * 150.02149 * 22 21 12 41 41 H 1.08996 * 109.96912 * 344.45543 * 25 8 7 42 42 H 1.09004 * 109.96734 * 223.14940 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8710 1.0352 0.0000 4 6 1.9886 -0.6339 1.2310 5 16 3.8177 -0.4934 1.3360 6 6 4.3739 -1.5468 -0.0157 7 6 4.4061 -0.8212 -1.3693 8 7 3.2399 0.0149 -1.6823 9 6 3.2159 0.3727 -3.1068 10 7 4.3575 1.2386 -3.4122 11 7 4.3729 2.6387 -3.3508 12 6 5.5833 3.0443 -3.6962 13 6 6.0170 4.3751 -3.7613 14 1 7.0531 4.5956 -3.9714 15 6 5.1070 5.4191 -3.5538 16 7 3.8811 5.1540 -3.1827 17 14 5.6439 7.1902 -3.8071 18 1 5.2857 7.6244 -5.1813 19 1 4.9590 8.0613 -2.8185 20 1 7.1138 7.2931 -3.6228 21 7 6.3462 1.9257 -3.9875 22 6 7.7466 1.9310 -4.4179 23 6 5.5802 0.8320 -3.8083 24 16 6.0733 -0.7906 -4.0432 25 6 2.0111 -0.6611 -1.2934 26 1 -0.3633 0.5561 0.8642 27 1 -0.3633 -1.0264 0.0495 28 1 -0.3633 0.4704 -0.9137 29 1 1.5351 -0.1358 2.0880 30 1 1.7037 -1.6860 1.2271 31 1 5.3764 -1.9093 0.2117 32 1 3.7019 -2.4015 -0.0937 33 1 5.2937 -0.1891 -1.3948 34 1 4.5070 -1.5708 -2.1541 35 1 3.2753 -0.5332 -3.7100 36 1 2.2891 0.9000 -3.3334 37 1 3.2507 5.8772 -3.0393 38 1 7.7922 1.9824 -5.5057 39 1 8.2544 2.7961 -3.9917 40 1 8.2351 1.0183 -4.0765 41 1 2.2072 -1.7192 -1.1201 42 1 1.2588 -0.5438 -2.0735 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794646876.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:51 Heat of formation + Delta-G solvation = 89.928235 kcal Electronic energy + Delta-G solvation = -24635.454999 eV Core-core repulsion = 21290.750766 eV Total energy + Delta-G solvation = -3344.704233 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.92152 -38.64912 -35.53856 -34.09647 -33.73550 -31.17988 -30.32233 -27.89675 -27.26742 -26.60551 -25.67741 -24.38711 -21.98996 -21.01324 -20.79405 -19.98291 -17.81073 -16.92281 -16.20640 -16.05517 -15.95378 -15.64717 -15.09679 -14.89129 -14.63900 -14.39404 -14.06565 -13.60004 -13.40650 -12.89282 -12.64248 -12.59181 -12.33517 -12.22180 -11.96786 -11.80998 -11.68936 -11.54289 -11.37487 -11.08202 -10.98302 -10.69819 -10.63438 -10.57144 -10.52248 -10.05595 -9.56636 -9.54565 -9.24404 -8.88365 -8.12119 -7.40025 -7.03542 -6.82947 -6.66496 -5.12719 1.90688 2.27229 2.52477 2.72270 2.79154 2.92179 2.96385 3.30922 3.53875 3.65609 4.01351 4.19186 4.70463 4.81448 4.84814 4.97648 5.11445 5.14630 5.20593 5.40402 5.41958 5.52142 5.55988 5.61167 5.63528 5.71304 5.77214 5.83450 6.02870 6.06420 6.10356 6.16319 6.26594 6.41094 6.50911 6.54184 6.81440 6.99073 7.14837 7.25871 7.58000 7.77943 8.23375 8.35951 9.14114 9.94266 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.011981 B = 0.004651 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.393998 B = 6018.359880 C = 7309.782261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.099 0.901 4 C -0.057 4.057 5 S -0.261 6.261 6 C -0.078 4.078 7 C 0.053 3.947 8 N -0.532 5.532 9 C 0.327 3.673 10 N -0.368 5.368 11 N -0.327 5.327 12 C 0.372 3.628 13 C -0.439 4.439 14 H 0.097 0.903 15 C 0.077 3.923 16 N -0.734 5.734 17 Si 0.928 3.072 18 H -0.267 1.267 19 H -0.273 1.273 20 H -0.259 1.259 21 N -0.513 5.513 22 C 0.100 3.900 23 C 0.465 3.535 24 S -0.718 6.718 25 C 0.059 3.941 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.285 0.715 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.051 0.949 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.794 -4.704 4.583 8.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 H 0.117 0.883 4 C -0.205 4.205 5 S -0.032 6.032 6 C -0.227 4.227 7 C -0.077 4.077 8 N -0.258 5.258 9 C 0.115 3.885 10 N -0.154 5.154 11 N -0.158 5.158 12 C 0.123 3.877 13 C -0.480 4.480 14 H 0.115 0.885 15 C -0.150 4.150 16 N -0.358 5.358 17 Si 0.751 3.249 18 H -0.192 1.192 19 H -0.198 1.198 20 H -0.183 1.183 21 N -0.213 5.213 22 C -0.043 4.043 23 C 0.095 3.905 24 S -0.594 6.594 25 C -0.070 4.070 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.120 0.880 30 H 0.093 0.907 31 H 0.124 0.876 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.123 0.877 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.069 0.931 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.042 -4.295 5.832 8.825 hybrid contribution -0.006 0.043 -1.490 1.491 sum -5.047 -4.252 4.342 7.900 Atomic orbital electron populations 1.21991 0.94971 1.01345 1.02186 1.20267 0.95332 1.03210 0.93107 0.88318 1.22406 0.93389 1.03378 1.01341 1.86886 1.06723 1.68297 1.41331 1.23429 1.04820 0.98819 0.95648 1.22556 0.93860 0.96535 0.94731 1.61997 1.02407 1.43546 1.17851 1.21850 0.86678 0.91971 0.87993 1.49107 1.07959 1.07467 1.50842 1.79453 1.16205 0.82061 1.38128 1.21343 0.85037 0.88563 0.92764 1.18342 0.97594 0.85563 1.46520 0.88498 1.25827 0.94311 1.01900 0.92968 1.69885 1.03768 1.35234 1.26916 0.85961 0.80099 0.79744 0.79100 1.19198 1.19764 1.18275 1.45973 1.12846 1.05158 1.57353 1.21760 0.77968 1.04178 1.00388 1.22878 0.85337 0.92346 0.89980 1.92682 1.85448 0.99484 1.81767 1.21997 0.91790 0.96077 0.97101 0.92618 0.93058 0.92223 0.87952 0.90709 0.87595 0.90685 0.90691 0.91106 0.90895 0.87701 0.90363 0.91451 0.89759 0.89263 0.93070 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.85 37.16 0.33 -1.09 16 2 C -0.10 -1.22 2.14 -93.99 -0.20 -1.43 16 3 H 0.10 1.57 7.87 -51.93 -0.41 1.16 16 4 C -0.06 -0.67 5.31 33.78 0.18 -0.49 16 5 S -0.26 -3.96 21.84 -107.50 -2.35 -6.31 16 6 C -0.08 -1.15 5.60 37.48 0.21 -0.94 16 7 C 0.05 0.93 3.86 -3.53 -0.01 0.92 16 8 N -0.53 -9.09 4.22 -239.30 -1.01 -10.10 16 9 C 0.33 6.10 5.73 -63.31 -0.36 5.74 16 10 N -0.37 -8.39 3.59 -65.05 -0.23 -8.62 16 11 N -0.33 -8.34 10.79 31.21 0.34 -8.00 16 12 C 0.37 9.16 7.50 -155.27 -1.16 8.00 16 13 C -0.44 -10.25 8.99 -38.20 -0.34 -10.60 16 14 H 0.10 2.04 7.08 -52.49 -0.37 1.67 16 15 C 0.08 1.74 5.49 -17.32 -0.10 1.64 16 16 N -0.73 -17.80 11.92 55.55 0.66 -17.13 16 17 Si 0.93 16.70 29.56 -169.99 -5.03 11.67 16 18 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 19 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 20 H -0.26 -4.53 7.11 56.52 0.40 -4.13 16 21 N -0.51 -11.56 3.17 -124.66 -0.39 -11.95 16 22 C 0.10 1.78 10.66 59.85 0.64 2.42 16 23 C 0.46 10.79 6.75 -86.94 -0.59 10.20 16 24 S -0.72 -16.74 26.76 -107.50 -2.88 -19.62 16 25 C 0.06 0.78 4.89 -4.55 -0.02 0.76 16 26 H 0.05 0.51 8.12 -51.93 -0.42 0.09 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.59 7.94 -51.93 -0.41 0.18 16 29 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.11 1.52 8.14 -51.74 -0.42 1.09 16 32 H 0.07 0.95 7.02 -51.74 -0.36 0.59 16 33 H 0.07 1.63 6.91 -51.93 -0.36 1.27 16 34 H 0.07 1.32 6.31 -51.93 -0.33 1.00 16 35 H 0.07 1.33 7.42 -51.93 -0.39 0.95 16 36 H 0.11 1.84 7.88 -51.93 -0.41 1.44 16 37 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.33 7.27 -51.93 -0.38 0.95 16 40 H 0.09 1.57 7.61 -51.93 -0.40 1.17 16 41 H 0.05 0.63 6.05 -51.93 -0.31 0.32 16 42 H 0.07 0.87 6.94 -51.93 -0.36 0.51 16 LS Contribution 352.33 15.07 5.31 5.31 Total: -1.00 -29.43 352.33 -13.16 -42.59 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -6.15 Total: 7.03 kcal Atomic # 6 Polarization: 16.57 SS G_CDS: -1.43 Total: 15.14 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.64 Total: -55.82 kcal Atomic # 14 Polarization: 16.70 SS G_CDS: -5.03 Total: 11.67 kcal Atomic # 16 Polarization: -20.70 SS G_CDS: -5.22 Total: -25.93 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.43 -13.16 -42.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794646876.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.519 kcal (2) G-P(sol) polarization free energy of solvation -29.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds