Wall clock time and date at job start Tue Mar 31 2020 16:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08990 * 108.22916 * 2 1 4 4 C 1.45857 * 108.32005 * 117.24462 * 2 1 3 5 5 S 1.83750 * 109.14112 * 185.71829 * 4 2 1 6 6 C 1.80174 * 102.69399 * 292.59812 * 5 4 2 7 7 C 1.53613 * 113.04038 * 84.92526 * 6 5 4 8 8 N 1.46862 * 116.10986 * 315.59110 * 7 6 5 9 9 C 1.46897 * 110.99879 * 194.53148 * 8 7 6 10 10 N 1.46503 * 109.47069 * 293.95101 * 9 8 7 11 11 N 1.40159 * 126.14893 * 269.69412 * 10 9 8 12 12 C 1.32241 * 107.75948 * 179.88790 * 11 10 9 13 13 C 1.40116 * 125.92658 * 180.13390 * 12 11 10 14 14 H 1.07997 * 120.00016 * 174.61756 * 13 12 11 15 15 C 1.40043 * 119.99979 * 354.62125 * 13 12 11 16 16 N 1.30793 * 119.99956 * 6.07731 * 15 13 12 17 17 Si 1.86794 * 119.99846 * 186.08056 * 15 13 12 18 18 H 1.48501 * 109.47334 * 94.98118 * 17 15 13 19 19 H 1.48498 * 109.47082 * 214.98032 * 17 15 13 20 20 H 1.48499 * 109.47428 * 334.98124 * 17 15 13 21 21 N 1.38497 * 108.14291 * 0.36892 * 12 11 10 22 22 C 1.46511 * 125.83081 * 179.72513 * 21 12 11 23 23 C 1.34721 * 108.33330 * 359.76546 * 21 12 11 24 24 S 1.71206 * 125.97289 * 179.97438 * 23 21 12 25 25 C 1.45539 * 110.42893 * 318.08176 * 8 7 6 26 26 H 1.08996 * 109.46797 * 302.76238 * 1 2 3 27 27 H 1.08996 * 109.46870 * 182.75865 * 1 2 3 28 28 H 1.08999 * 109.46848 * 62.75787 * 1 2 3 29 29 H 1.09001 * 109.52660 * 305.61575 * 4 2 1 30 30 H 1.09003 * 109.53180 * 65.82273 * 4 2 1 31 31 H 1.09001 * 108.77277 * 205.84454 * 6 5 4 32 32 H 1.09004 * 108.76997 * 324.11759 * 6 5 4 33 33 H 1.08998 * 108.15253 * 77.31591 * 7 6 5 34 34 H 1.08997 * 108.14970 * 193.86923 * 7 6 5 35 35 H 1.08993 * 109.46863 * 53.95526 * 9 8 7 36 36 H 1.09004 * 109.47084 * 173.95576 * 9 8 7 37 37 H 0.97003 * 119.99978 * 180.02562 * 16 15 13 38 38 H 1.08998 * 109.46705 * 270.02049 * 22 21 12 39 39 H 1.08991 * 109.47093 * 30.01997 * 22 21 12 40 40 H 1.09000 * 109.46852 * 150.02149 * 22 21 12 41 41 H 1.08996 * 109.96912 * 344.45543 * 25 8 7 42 42 H 1.09004 * 109.96734 * 223.14940 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8710 1.0352 0.0000 4 6 1.9886 -0.6339 1.2310 5 16 3.8177 -0.4934 1.3360 6 6 4.3739 -1.5468 -0.0157 7 6 4.4061 -0.8212 -1.3693 8 7 3.2399 0.0149 -1.6823 9 6 3.2159 0.3727 -3.1068 10 7 4.3575 1.2386 -3.4122 11 7 4.3729 2.6387 -3.3508 12 6 5.5833 3.0443 -3.6962 13 6 6.0170 4.3751 -3.7613 14 1 7.0531 4.5956 -3.9714 15 6 5.1070 5.4191 -3.5538 16 7 3.8811 5.1540 -3.1827 17 14 5.6439 7.1902 -3.8071 18 1 5.2857 7.6244 -5.1813 19 1 4.9590 8.0613 -2.8185 20 1 7.1138 7.2931 -3.6228 21 7 6.3462 1.9257 -3.9875 22 6 7.7466 1.9310 -4.4179 23 6 5.5802 0.8320 -3.8083 24 16 6.0733 -0.7906 -4.0432 25 6 2.0111 -0.6611 -1.2934 26 1 -0.3633 0.5561 0.8642 27 1 -0.3633 -1.0264 0.0495 28 1 -0.3633 0.4704 -0.9137 29 1 1.5351 -0.1358 2.0880 30 1 1.7037 -1.6860 1.2271 31 1 5.3764 -1.9093 0.2117 32 1 3.7019 -2.4015 -0.0937 33 1 5.2937 -0.1891 -1.3948 34 1 4.5070 -1.5708 -2.1541 35 1 3.2753 -0.5332 -3.7100 36 1 2.2891 0.9000 -3.3334 37 1 3.2507 5.8772 -3.0393 38 1 7.7922 1.9824 -5.5057 39 1 8.2544 2.7961 -3.9917 40 1 8.2351 1.0183 -4.0765 41 1 2.2072 -1.7192 -1.1201 42 1 1.2588 -0.5438 -2.0735 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794646876.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:50 Heat of formation + Delta-G solvation = 74.514113 kcal Electronic energy + Delta-G solvation = -24636.123406 eV Core-core repulsion = 21290.750766 eV Total energy + Delta-G solvation = -3345.372640 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.66568 -39.90638 -36.84132 -35.76904 -35.27255 -32.73255 -31.85012 -29.41075 -28.30248 -28.14709 -26.97611 -25.85389 -23.60559 -22.69438 -22.23346 -21.07836 -19.52237 -18.53342 -17.66616 -17.51467 -17.33153 -17.07148 -16.55769 -16.43398 -16.19797 -15.74400 -15.13776 -15.06014 -14.63655 -14.20101 -13.91729 -13.80475 -13.64826 -13.48055 -13.44408 -13.25674 -13.05059 -12.83793 -12.66858 -12.50787 -12.42404 -12.14964 -11.97635 -11.85274 -11.69555 -11.58849 -11.37162 -10.91605 -10.68409 -10.63617 -9.51393 -8.77031 -8.65084 -8.63384 -8.44935 -6.95575 0.51116 0.78134 0.80065 1.28627 1.44610 1.60575 1.62012 1.64357 1.86350 2.12640 2.40454 2.77384 3.09131 3.53534 3.69088 3.75226 3.86344 3.91919 4.04280 4.08788 4.21937 4.36366 4.43122 4.48072 4.55325 4.57558 4.67265 4.68849 4.72764 4.76879 4.84220 4.89247 4.98596 5.10411 5.13781 5.26334 5.32930 5.42607 5.72912 5.82872 5.94076 6.21190 6.48335 6.57810 7.33324 8.25683 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.011981 B = 0.004651 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.393998 B = 6018.359880 C = 7309.782261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 H 0.059 0.941 4 C -0.041 4.041 5 S -0.317 6.317 6 C -0.064 4.064 7 C 0.072 3.928 8 N -0.543 5.543 9 C 0.323 3.677 10 N -0.368 5.368 11 N -0.362 5.362 12 C 0.351 3.649 13 C -0.454 4.454 14 H 0.117 0.883 15 C 0.035 3.965 16 N -0.773 5.773 17 Si 1.005 2.995 18 H -0.262 1.262 19 H -0.272 1.272 20 H -0.247 1.247 21 N -0.517 5.517 22 C 0.095 3.905 23 C 0.454 3.546 24 S -0.733 6.733 25 C 0.057 3.943 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.117 0.883 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.025 0.975 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.291 0.709 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.591 -4.470 4.892 8.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.112 4.112 3 H 0.077 0.923 4 C -0.188 4.188 5 S -0.089 6.089 6 C -0.213 4.213 7 C -0.058 4.058 8 N -0.269 5.269 9 C 0.112 3.888 10 N -0.154 5.154 11 N -0.194 5.194 12 C 0.102 3.898 13 C -0.495 4.495 14 H 0.135 0.865 15 C -0.188 4.188 16 N -0.398 5.398 17 Si 0.824 3.176 18 H -0.187 1.187 19 H -0.197 1.197 20 H -0.170 1.170 21 N -0.217 5.217 22 C -0.046 4.046 23 C 0.082 3.918 24 S -0.609 6.609 25 C -0.071 4.071 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.135 0.865 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.130 0.870 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.123 0.877 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.838 -4.093 6.150 9.415 hybrid contribution 0.190 -0.029 -1.569 1.580 sum -5.648 -4.122 4.581 8.359 Atomic orbital electron populations 1.21920 0.92329 1.02965 1.02488 1.20136 0.97345 1.00725 0.93028 0.92290 1.22507 0.89672 1.05201 1.01455 1.87097 1.11095 1.69128 1.41544 1.23307 1.05676 0.98801 0.93530 1.22265 0.92345 0.95066 0.96133 1.61954 1.03861 1.44476 1.16593 1.22053 0.85896 0.91609 0.89222 1.49429 1.08640 1.07030 1.50267 1.79340 1.17376 0.83444 1.39227 1.21722 0.85408 0.89512 0.93133 1.18891 0.98884 0.85435 1.46316 0.86512 1.26882 0.93945 1.06168 0.91792 1.69984 1.05166 1.36994 1.27658 0.84815 0.80166 0.73650 0.78932 1.18691 1.19653 1.16954 1.46259 1.14097 1.04360 1.56999 1.22022 0.75997 1.05079 1.01505 1.22959 0.85804 0.92482 0.90515 1.92560 1.85706 1.00063 1.82586 1.22190 0.90309 0.96635 0.97937 0.91813 0.90753 0.92510 0.86498 0.87956 0.87638 0.87970 0.95639 0.92379 0.90623 0.87006 0.89791 0.89875 0.87747 0.89323 0.91473 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.85 71.99 0.64 -1.65 16 2 C -0.09 -2.13 2.14 -12.97 -0.03 -2.16 16 3 H 0.06 1.88 7.87 -2.39 -0.02 1.86 16 4 C -0.04 -0.87 5.31 69.79 0.37 -0.50 16 5 S -0.32 -9.52 21.84 -56.49 -1.23 -10.75 16 6 C -0.06 -1.86 5.60 72.19 0.40 -1.46 16 7 C 0.07 2.59 3.86 86.52 0.33 2.93 16 8 N -0.54 -18.78 4.22 -911.02 -3.85 -22.63 16 9 C 0.32 12.34 5.73 170.81 0.98 13.32 16 10 N -0.37 -17.30 3.59 -359.72 -1.29 -18.59 16 11 N -0.36 -18.99 10.79 -55.17 -0.60 -19.59 16 12 C 0.35 17.60 7.50 133.52 1.00 18.61 16 13 C -0.45 -21.14 8.99 23.16 0.21 -20.93 16 14 H 0.12 4.77 7.08 -2.91 -0.02 4.75 16 15 C 0.04 1.58 5.49 85.29 0.47 2.05 16 16 N -0.77 -37.96 11.92 21.84 0.26 -37.69 16 17 Si 1.01 33.23 29.56 68.60 2.03 35.26 16 18 H -0.26 -8.43 7.11 99.48 0.71 -7.73 16 19 H -0.27 -8.86 7.11 99.48 0.71 -8.16 16 20 H -0.25 -7.59 7.11 99.48 0.71 -6.88 16 21 N -0.52 -23.66 3.17 -548.30 -1.74 -25.40 16 22 C 0.10 3.37 10.66 127.77 1.36 4.73 16 23 C 0.45 21.62 6.75 179.06 1.21 22.83 16 24 S -0.73 -34.78 26.76 -56.49 -1.51 -36.29 16 25 C 0.06 1.42 4.89 86.57 0.42 1.85 16 26 H 0.06 0.99 8.12 -2.39 -0.02 0.97 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 1.00 7.94 -2.39 -0.02 0.98 16 29 H 0.12 2.18 8.08 -2.39 -0.02 2.16 16 30 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.11 3.03 8.14 -2.50 -0.02 3.01 16 32 H 0.10 2.37 7.02 -2.50 -0.02 2.35 16 33 H 0.02 1.15 6.91 -2.39 -0.02 1.13 16 34 H 0.06 2.21 6.31 -2.39 -0.02 2.20 16 35 H 0.08 2.82 7.42 -2.39 -0.02 2.80 16 36 H 0.11 4.02 7.88 -2.38 -0.02 4.00 16 37 H 0.29 12.92 8.30 -92.71 -0.77 12.15 16 38 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.10 3.20 7.27 -2.39 -0.02 3.19 16 40 H 0.09 3.12 7.61 -2.39 -0.02 3.11 16 41 H 0.07 1.48 6.05 -2.39 -0.01 1.46 16 42 H 0.09 1.95 6.94 -2.38 -0.02 1.94 16 Total: -1.00 -66.05 352.33 0.47 -65.58 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: 1.02 Total: 30.51 kcal Atomic # 6 Polarization: 32.23 SS G_CDS: 7.37 Total: 39.60 kcal Atomic # 7 Polarization: -116.69 SS G_CDS: -7.21 Total: -123.90 kcal Atomic # 14 Polarization: 33.23 SS G_CDS: 2.03 Total: 35.26 kcal Atomic # 16 Polarization: -44.30 SS G_CDS: -2.75 Total: -47.04 kcal Total: -66.05 0.47 -65.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794646876.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.092 kcal (2) G-P(sol) polarization free energy of solvation -66.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds