Wall clock time and date at job start Tue Mar 31 2020 14:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31806 * 119.12398 * 2 1 4 4 C 1.32316 * 120.82261 * 180.02562 * 3 2 1 5 5 C 1.38622 * 119.09974 * 0.02562 * 4 3 2 6 6 C 1.38569 * 118.39992 * 359.97438 * 5 4 3 7 7 C 1.50705 * 120.44784 * 180.02562 * 6 5 4 8 8 O 1.45204 * 109.47029 * 359.97438 * 7 6 5 9 9 C 1.34229 * 116.99680 * 180.02562 * 8 7 6 10 10 O 1.20820 * 120.00264 * 0.02562 * 9 8 7 11 11 C 1.50702 * 119.99692 * 180.02562 * 9 8 7 12 12 C 1.50701 * 109.47242 * 179.97438 * 11 9 8 13 13 C 1.38299 * 119.93217 * 269.72899 * 12 11 9 14 14 C 1.38093 * 120.06953 * 179.72477 * 13 12 11 15 15 C 1.38883 * 119.92808 * 0.56550 * 14 13 12 16 16 O 1.35754 * 120.06438 * 179.68623 * 15 14 13 17 17 C 1.34826 * 116.99724 * 174.49160 * 16 15 14 18 18 H 1.07998 * 120.00100 * 5.04739 * 17 16 15 19 19 C 1.38654 * 119.99970 * 185.05457 * 17 16 15 20 20 N 1.31557 * 120.00012 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99959 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47303 * 60.00249 * 21 19 17 23 23 H 1.48499 * 109.46956 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47359 * 299.99968 * 21 19 17 25 25 C 1.38871 * 119.86468 * 359.70509 * 15 14 13 26 26 C 1.38101 * 119.93230 * 0.02562 * 25 15 14 27 27 N 1.31784 * 119.12421 * 180.30750 * 2 1 3 28 28 H 1.09006 * 109.47874 * 89.99812 * 1 2 3 29 29 H 1.09005 * 109.47392 * 209.99289 * 1 2 3 30 30 H 1.09001 * 109.47597 * 329.99221 * 1 2 3 31 31 H 1.08002 * 120.45466 * 180.02562 * 4 3 2 32 32 H 1.07999 * 120.79835 * 179.97438 * 5 4 3 33 33 H 1.09009 * 109.46929 * 240.00467 * 7 6 5 34 34 H 1.08992 * 109.47452 * 120.00439 * 7 6 5 35 35 H 1.09002 * 109.47056 * 59.99464 * 11 9 8 36 36 H 1.09001 * 109.46884 * 299.99951 * 11 9 8 37 37 H 1.08005 * 119.96050 * 359.97425 * 13 12 11 38 38 H 1.07999 * 120.03730 * 180.26989 * 14 13 12 39 39 H 0.97002 * 120.00021 * 179.97438 * 20 19 17 40 40 H 1.08002 * 120.03853 * 179.97438 * 25 15 14 41 41 H 1.07997 * 119.96732 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1484 1.1514 0.0000 4 6 3.4710 1.1906 -0.0005 5 6 4.1808 -0.0001 -0.0016 6 6 3.4712 -1.1903 -0.0015 7 6 4.1961 -2.5116 -0.0021 8 8 5.6291 -2.2774 -0.0033 9 6 6.4233 -3.3595 -0.0044 10 8 5.9373 -4.4657 -0.0049 11 6 7.9213 -3.1947 -0.0051 12 6 8.5761 -4.5520 -0.0057 13 6 8.8816 -5.1714 1.1925 14 6 9.4764 -6.4176 1.1953 15 6 9.7785 -7.0439 -0.0070 16 8 10.3691 -8.2662 -0.0075 17 6 10.5310 -8.8672 -1.2035 18 1 10.2717 -8.3424 -2.1111 19 6 11.0302 -10.1592 -1.2682 20 7 11.3464 -10.7983 -0.1627 21 14 11.2539 -10.9921 -2.9252 22 1 12.1985 -10.2006 -3.7537 23 1 11.7990 -12.3585 -2.7228 24 1 9.9425 -11.0793 -3.6165 25 6 9.4757 -6.4169 -1.2085 26 6 8.8757 -5.1730 -1.2046 27 7 2.1483 -1.1512 -0.0062 28 1 -0.3635 0.0000 -1.0277 29 1 -0.3634 -0.8901 0.5137 30 1 -0.3634 0.8899 0.5139 31 1 3.9906 2.1375 -0.0001 32 1 5.2608 -0.0001 -0.0024 33 1 3.9200 -3.0771 -0.8922 34 1 3.9207 -3.0775 0.8877 35 1 8.2267 -2.6447 0.8851 36 1 8.2258 -2.6436 -0.8948 37 1 8.6510 -4.6816 2.1271 38 1 9.7108 -6.9027 2.1313 39 1 11.6953 -11.7023 -0.2079 40 1 9.7098 -6.9012 -2.1451 41 1 8.6403 -4.6847 -2.1387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795504558.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:35 Heat of formation + Delta-G solvation = -38.415300 kcal Electronic energy + Delta-G solvation = -25475.016494 eV Core-core repulsion = 21514.257294 eV Total energy + Delta-G solvation = -3960.759200 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.54371 -40.51661 -39.02466 -37.14340 -36.30098 -34.46390 -33.72075 -32.55854 -31.59238 -30.21939 -29.23581 -28.40236 -26.74733 -25.20208 -23.90948 -22.77745 -22.03991 -21.51156 -20.23692 -18.18620 -18.03658 -17.43198 -17.26906 -16.97734 -16.79142 -15.82226 -15.62642 -15.47883 -14.80901 -14.65672 -14.40018 -13.95131 -13.85078 -13.69469 -13.59838 -13.45767 -12.97925 -12.80224 -12.76387 -12.63343 -12.52598 -11.97606 -11.61194 -11.38144 -11.32310 -11.25512 -10.94498 -10.83271 -10.72157 -10.69017 -10.47118 -10.42351 -9.77371 -9.67485 -9.37664 -8.85733 -8.21739 -7.24805 -6.47875 -4.06598 0.48695 0.60681 1.95046 2.19382 2.24551 2.50545 3.11668 3.13402 3.15902 3.27922 3.56357 3.69909 3.94633 4.02316 4.46578 4.53433 4.68594 4.80730 4.89037 5.00830 5.02225 5.05755 5.06853 5.13652 5.15147 5.25585 5.26056 5.42431 5.51834 5.56334 5.65876 5.77960 5.98609 6.16151 6.26209 6.35822 6.58761 6.64487 6.85323 7.00273 7.17331 7.29259 7.40037 7.66209 7.74751 7.77916 7.96845 8.97408 9.66383 10.69769 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.028266 B = 0.001836 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.352950 B =15243.894608 C =15621.211931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.321 3.679 3 N -0.523 5.523 4 C 0.153 3.847 5 C -0.213 4.213 6 C 0.178 3.822 7 C 0.116 3.884 8 O -0.364 6.364 9 C 0.458 3.542 10 O -0.484 6.484 11 C -0.047 4.047 12 C -0.187 4.187 13 C -0.056 4.056 14 C -0.192 4.192 15 C 0.160 3.840 16 O -0.175 6.175 17 C -0.393 4.393 18 H 0.092 0.908 19 C 0.040 3.960 20 N -0.861 5.861 21 Si 0.942 3.058 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.269 1.269 25 C -0.234 4.234 26 C -0.052 4.052 27 N -0.516 5.516 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.172 0.828 32 H 0.159 0.841 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.271 0.729 40 H 0.128 0.872 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.161 22.871 -0.241 26.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.054 3.946 3 N -0.238 5.238 4 C -0.013 4.013 5 C -0.235 4.235 6 C 0.032 3.968 7 C 0.042 3.958 8 O -0.281 6.281 9 C 0.299 3.701 10 O -0.368 6.368 11 C -0.084 4.084 12 C -0.188 4.188 13 C -0.074 4.074 14 C -0.211 4.211 15 C 0.105 3.895 16 O -0.077 6.077 17 C -0.469 4.469 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.195 1.195 25 C -0.253 4.253 26 C -0.070 4.070 27 N -0.232 5.232 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.189 0.811 32 H 0.177 0.823 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.136 0.864 39 H 0.081 0.919 40 H 0.146 0.854 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.130 22.112 0.003 26.793 hybrid contribution 0.950 -0.517 -0.904 1.410 sum -14.180 21.596 -0.901 25.851 Atomic orbital electron populations 1.20585 0.85365 1.04338 1.04063 1.23234 0.98194 0.82908 0.90288 1.68266 1.10373 1.30371 1.14755 1.23313 0.89522 0.98820 0.89650 1.22761 1.03957 0.93516 1.03246 1.21152 0.89700 0.94996 0.90922 1.21325 0.77245 0.92210 1.05065 1.86407 1.17811 1.38677 1.85248 1.24325 0.90860 0.82130 0.72735 1.90740 1.76270 1.26433 1.43337 1.20106 0.84875 0.97985 1.05445 1.18610 1.09706 0.96493 0.94009 1.20422 0.96748 0.93970 0.96270 1.20164 1.07978 0.96680 0.96300 1.19407 0.90064 0.86690 0.93301 1.83976 1.65693 1.25013 1.33063 1.21297 1.44880 0.97646 0.83064 0.89031 1.25306 0.96384 0.95444 0.99350 1.70029 1.39838 1.12559 1.27099 0.85771 0.79060 0.78471 0.80082 1.19470 1.20239 1.19454 1.21110 1.08537 0.97151 0.98495 1.20535 0.96120 0.94275 0.96120 1.67825 1.08856 1.31241 1.15290 0.89470 0.89452 0.89455 0.81063 0.82312 0.88215 0.88191 0.87604 0.87645 0.87162 0.86377 0.91899 0.85437 0.87607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.54 10.32 36.00 0.37 -0.16 16 2 C 0.32 3.13 7.64 -157.20 -1.20 1.93 16 3 N -0.52 -5.02 10.33 -10.72 -0.11 -5.14 16 4 C 0.15 1.17 11.31 -17.20 -0.19 0.98 16 5 C -0.21 -1.76 9.48 -39.32 -0.37 -2.13 16 6 C 0.18 1.81 6.82 -82.25 -0.56 1.25 16 7 C 0.12 1.21 6.03 36.01 0.22 1.43 16 8 O -0.36 -3.86 8.77 -39.26 -0.34 -4.20 16 9 C 0.46 5.96 7.95 36.01 0.29 6.25 16 10 O -0.48 -8.30 15.78 -18.74 -0.30 -8.60 16 11 C -0.05 -0.54 5.94 -29.03 -0.17 -0.71 16 12 C -0.19 -3.06 4.38 -104.57 -0.46 -3.51 16 13 C -0.06 -0.98 9.69 -39.61 -0.38 -1.36 16 14 C -0.19 -4.05 9.99 -39.40 -0.39 -4.44 16 15 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 16 O -0.17 -4.98 9.76 0.05 0.00 -4.98 16 17 C -0.39 -10.96 9.49 30.89 0.29 -10.66 16 18 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 19 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 20 N -0.86 -25.17 13.67 55.48 0.76 -24.41 16 21 Si 0.94 20.46 29.55 -169.99 -5.02 15.43 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 C -0.23 -5.06 9.17 -39.40 -0.36 -5.42 16 26 C -0.05 -0.94 9.69 -39.61 -0.38 -1.32 16 27 N -0.52 -5.62 10.27 -6.99 -0.07 -5.70 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 32 H 0.16 1.04 7.10 -52.49 -0.37 0.67 16 33 H 0.10 1.06 8.13 -51.92 -0.42 0.64 16 34 H 0.10 1.05 8.13 -51.93 -0.42 0.63 16 35 H 0.11 0.94 8.08 -51.93 -0.42 0.52 16 36 H 0.11 0.96 8.08 -51.93 -0.42 0.54 16 37 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 38 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 39 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.13 2.75 5.64 -52.49 -0.30 2.46 16 41 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 364.85 15.07 5.50 5.50 Total: -1.00 -34.24 364.85 -7.98 -42.22 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -4.72 Total: 3.17 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -3.67 Total: -13.30 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.58 Total: -35.24 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.64 Total: -17.78 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.24 -7.98 -42.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795504558.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.809 kcal (2) G-P(sol) polarization free energy of solvation -34.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds