Wall clock time and date at job start Tue Mar 31 2020 14:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31806 * 119.12398 * 2 1 4 4 C 1.32316 * 120.82261 * 180.02562 * 3 2 1 5 5 C 1.38622 * 119.09974 * 0.02562 * 4 3 2 6 6 C 1.38569 * 118.39992 * 359.97438 * 5 4 3 7 7 C 1.50705 * 120.44784 * 180.02562 * 6 5 4 8 8 O 1.45204 * 109.47029 * 359.97438 * 7 6 5 9 9 C 1.34229 * 116.99680 * 180.02562 * 8 7 6 10 10 O 1.20820 * 120.00264 * 0.02562 * 9 8 7 11 11 C 1.50702 * 119.99692 * 180.02562 * 9 8 7 12 12 C 1.50701 * 109.47242 * 179.97438 * 11 9 8 13 13 C 1.38299 * 119.93217 * 269.72899 * 12 11 9 14 14 C 1.38093 * 120.06953 * 179.72477 * 13 12 11 15 15 C 1.38883 * 119.92808 * 0.56550 * 14 13 12 16 16 O 1.35754 * 120.06438 * 179.68623 * 15 14 13 17 17 C 1.34826 * 116.99724 * 174.49160 * 16 15 14 18 18 H 1.07998 * 120.00100 * 5.04739 * 17 16 15 19 19 C 1.38654 * 119.99970 * 185.05457 * 17 16 15 20 20 N 1.31557 * 120.00012 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99959 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47303 * 60.00249 * 21 19 17 23 23 H 1.48499 * 109.46956 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47359 * 299.99968 * 21 19 17 25 25 C 1.38871 * 119.86468 * 359.70509 * 15 14 13 26 26 C 1.38101 * 119.93230 * 0.02562 * 25 15 14 27 27 N 1.31784 * 119.12421 * 180.30750 * 2 1 3 28 28 H 1.09006 * 109.47874 * 89.99812 * 1 2 3 29 29 H 1.09005 * 109.47392 * 209.99289 * 1 2 3 30 30 H 1.09001 * 109.47597 * 329.99221 * 1 2 3 31 31 H 1.08002 * 120.45466 * 180.02562 * 4 3 2 32 32 H 1.07999 * 120.79835 * 179.97438 * 5 4 3 33 33 H 1.09009 * 109.46929 * 240.00467 * 7 6 5 34 34 H 1.08992 * 109.47452 * 120.00439 * 7 6 5 35 35 H 1.09002 * 109.47056 * 59.99464 * 11 9 8 36 36 H 1.09001 * 109.46884 * 299.99951 * 11 9 8 37 37 H 1.08005 * 119.96050 * 359.97425 * 13 12 11 38 38 H 1.07999 * 120.03730 * 180.26989 * 14 13 12 39 39 H 0.97002 * 120.00021 * 179.97438 * 20 19 17 40 40 H 1.08002 * 120.03853 * 179.97438 * 25 15 14 41 41 H 1.07997 * 119.96732 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1484 1.1514 0.0000 4 6 3.4710 1.1906 -0.0005 5 6 4.1808 -0.0001 -0.0016 6 6 3.4712 -1.1903 -0.0015 7 6 4.1961 -2.5116 -0.0021 8 8 5.6291 -2.2774 -0.0033 9 6 6.4233 -3.3595 -0.0044 10 8 5.9373 -4.4657 -0.0049 11 6 7.9213 -3.1947 -0.0051 12 6 8.5761 -4.5520 -0.0057 13 6 8.8816 -5.1714 1.1925 14 6 9.4764 -6.4176 1.1953 15 6 9.7785 -7.0439 -0.0070 16 8 10.3691 -8.2662 -0.0075 17 6 10.5310 -8.8672 -1.2035 18 1 10.2717 -8.3424 -2.1111 19 6 11.0302 -10.1592 -1.2682 20 7 11.3464 -10.7983 -0.1627 21 14 11.2539 -10.9921 -2.9252 22 1 12.1985 -10.2006 -3.7537 23 1 11.7990 -12.3585 -2.7228 24 1 9.9425 -11.0793 -3.6165 25 6 9.4757 -6.4169 -1.2085 26 6 8.8757 -5.1730 -1.2046 27 7 2.1483 -1.1512 -0.0062 28 1 -0.3635 0.0000 -1.0277 29 1 -0.3634 -0.8901 0.5137 30 1 -0.3634 0.8899 0.5139 31 1 3.9906 2.1375 -0.0001 32 1 5.2608 -0.0001 -0.0024 33 1 3.9200 -3.0771 -0.8922 34 1 3.9207 -3.0775 0.8877 35 1 8.2267 -2.6447 0.8851 36 1 8.2258 -2.6436 -0.8948 37 1 8.6510 -4.6816 2.1271 38 1 9.7108 -6.9027 2.1313 39 1 11.6953 -11.7023 -0.2079 40 1 9.7098 -6.9012 -2.1451 41 1 8.6403 -4.6847 -2.1387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795504558.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:34 Heat of formation + Delta-G solvation = -59.552327 kcal Electronic energy + Delta-G solvation = -25475.933064 eV Core-core repulsion = 21514.257294 eV Total energy + Delta-G solvation = -3961.675770 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -42.23331 -41.55219 -40.67451 -38.55569 -37.58965 -35.18272 -34.42605 -34.32772 -33.02047 -31.79531 -29.99229 -29.14933 -28.14691 -27.02578 -24.53774 -23.68398 -23.64289 -22.64013 -21.52024 -19.86093 -19.02075 -18.86743 -18.21591 -18.02400 -17.79031 -16.69690 -16.50141 -16.36256 -16.20025 -16.09248 -15.90480 -15.51870 -15.16918 -14.84485 -14.58668 -14.42306 -14.28092 -14.14306 -13.62252 -13.47749 -13.46575 -13.22801 -12.96838 -12.88863 -12.50481 -12.35014 -12.28934 -12.26543 -12.15027 -11.90185 -11.56920 -11.51747 -11.19036 -10.79323 -10.40499 -10.35730 -9.77755 -8.95372 -8.48038 -6.16380 -0.17937 -0.02473 0.55964 0.60836 1.23153 1.33993 1.39591 1.48585 1.50570 2.17144 2.62675 2.76762 2.93858 3.07425 3.18155 3.41924 3.50953 3.75420 3.82348 3.99783 4.03239 4.07702 4.13598 4.18443 4.38915 4.45860 4.47787 4.53850 4.58032 4.69647 4.71134 4.79613 4.85183 5.03614 5.06444 5.13549 5.27409 5.34866 5.41044 5.54901 5.70833 5.73237 5.94769 6.01855 6.21524 6.75057 6.96389 7.00938 7.76948 8.74879 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.028266 B = 0.001836 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.352950 B =15243.894608 C =15621.211931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.306 3.694 3 N -0.538 5.538 4 C 0.154 3.846 5 C -0.210 4.210 6 C 0.160 3.840 7 C 0.120 3.880 8 O -0.345 6.345 9 C 0.467 3.533 10 O -0.533 6.533 11 C -0.044 4.044 12 C -0.160 4.160 13 C -0.052 4.052 14 C -0.208 4.208 15 C 0.115 3.885 16 O -0.232 6.232 17 C -0.415 4.415 18 H 0.102 0.898 19 C -0.024 4.024 20 N -0.920 5.920 21 Si 1.019 2.981 22 H -0.255 1.255 23 H -0.271 1.271 24 H -0.260 1.260 25 C -0.247 4.247 26 C -0.055 4.055 27 N -0.541 5.541 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.208 0.792 32 H 0.180 0.820 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.152 0.848 38 H 0.113 0.887 39 H 0.273 0.727 40 H 0.118 0.882 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.092 26.983 -1.282 30.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.039 3.961 3 N -0.253 5.253 4 C -0.011 4.011 5 C -0.231 4.231 6 C 0.015 3.985 7 C 0.046 3.954 8 O -0.262 6.262 9 C 0.311 3.689 10 O -0.421 6.421 11 C -0.081 4.081 12 C -0.161 4.161 13 C -0.070 4.070 14 C -0.228 4.228 15 C 0.065 3.935 16 O -0.139 6.139 17 C -0.491 4.491 18 H 0.119 0.881 19 C -0.221 4.221 20 N -0.558 5.558 21 Si 0.838 3.162 22 H -0.179 1.179 23 H -0.196 1.196 24 H -0.184 1.184 25 C -0.266 4.266 26 C -0.072 4.072 27 N -0.258 5.258 28 H 0.115 0.885 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.225 0.775 32 H 0.197 0.803 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.165 0.835 36 H 0.163 0.837 37 H 0.169 0.831 38 H 0.131 0.869 39 H 0.082 0.918 40 H 0.136 0.864 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.087 26.312 -1.036 30.858 hybrid contribution 1.039 -1.350 -0.473 1.768 sum -15.048 24.962 -1.509 29.186 Atomic orbital electron populations 1.20680 0.83646 1.04989 1.04876 1.23785 0.99468 0.82755 0.90082 1.68353 1.11473 1.30247 1.15259 1.23959 0.89041 1.00170 0.87974 1.22986 1.04862 0.92870 1.02410 1.21189 0.89851 0.95406 0.92103 1.21266 0.76902 0.92683 1.04598 1.86376 1.17878 1.37332 1.84566 1.24477 0.91491 0.81652 0.71278 1.90761 1.77195 1.28291 1.45849 1.20264 0.83164 0.95205 1.09475 1.19206 1.06156 0.98002 0.92708 1.20929 0.94840 0.92416 0.98814 1.20460 1.08682 0.98330 0.95280 1.19994 0.91765 0.86256 0.95490 1.83939 1.69005 1.27371 1.33567 1.21787 1.45263 0.98427 0.83619 0.88117 1.26609 0.95853 0.95837 1.03804 1.70180 1.42559 1.13175 1.29893 0.84649 0.79533 0.77309 0.74728 1.17896 1.19562 1.18422 1.21246 1.09278 0.98796 0.97261 1.20988 0.94724 0.92858 0.98679 1.67814 1.09499 1.32098 1.16363 0.88480 0.89195 0.88370 0.77491 0.80303 0.88858 0.88758 0.83497 0.83737 0.83080 0.86926 0.91825 0.86389 0.83916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.32 71.23 0.74 -0.21 16 2 C 0.31 5.53 7.64 138.75 1.06 6.59 16 3 N -0.54 -9.16 10.33 -187.84 -1.94 -11.10 16 4 C 0.15 1.87 11.31 84.71 0.96 2.83 16 5 C -0.21 -2.78 9.48 22.44 0.21 -2.57 16 6 C 0.16 2.94 6.82 42.56 0.29 3.23 16 7 C 0.12 2.28 6.03 71.24 0.43 2.71 16 8 O -0.34 -5.97 8.77 -51.41 -0.45 -6.42 16 9 C 0.47 10.22 7.95 71.24 0.57 10.78 16 10 O -0.53 -17.04 15.78 21.98 0.35 -16.69 16 11 C -0.04 -0.75 5.94 29.10 0.17 -0.58 16 12 C -0.16 -4.60 4.38 -19.83 -0.09 -4.68 16 13 C -0.05 -1.69 9.69 22.25 0.22 -1.47 16 14 C -0.21 -8.94 9.99 22.39 0.22 -8.72 16 15 C 0.12 5.84 6.65 22.58 0.15 5.99 16 16 O -0.23 -14.24 9.76 -22.74 -0.22 -14.46 16 17 C -0.41 -24.54 9.49 67.92 0.64 -23.90 16 18 H 0.10 5.46 5.20 -2.91 -0.02 5.44 16 19 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 20 N -0.92 -57.15 13.67 21.61 0.30 -56.85 16 21 Si 1.02 43.34 29.55 68.60 2.03 45.37 16 22 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 23 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 24 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 25 C -0.25 -10.82 9.17 22.39 0.21 -10.61 16 26 C -0.05 -1.82 9.69 22.25 0.22 -1.61 16 27 N -0.54 -11.21 10.27 -176.04 -1.81 -13.02 16 28 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.21 0.81 8.06 -2.91 -0.02 0.79 16 32 H 0.18 1.53 7.10 -2.91 -0.02 1.50 16 33 H 0.09 1.89 8.13 -2.38 -0.02 1.87 16 34 H 0.09 1.89 8.13 -2.39 -0.02 1.87 16 35 H 0.15 1.48 8.08 -2.39 -0.02 1.46 16 36 H 0.14 1.52 8.08 -2.39 -0.02 1.50 16 37 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 38 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 39 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 40 H 0.12 5.27 5.64 -2.91 -0.02 5.26 16 41 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -82.41 364.85 5.77 -76.64 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 1.07 Total: 19.64 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: 6.46 Total: -23.11 kcal Atomic # 7 Polarization: -77.51 SS G_CDS: -3.45 Total: -80.97 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -0.33 Total: -37.57 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -82.41 5.77 -76.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795504558.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.085 kcal (2) G-P(sol) polarization free energy of solvation -82.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds