Wall clock time and date at job start Tue Mar 31 2020 14:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31813 * 119.12466 * 2 1 4 4 C 1.32322 * 120.81511 * 180.02562 * 3 2 1 5 5 C 1.38617 * 119.10519 * 359.97438 * 4 3 2 6 6 C 1.38572 * 118.40138 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.44887 * 180.02562 * 6 5 4 8 8 O 1.45202 * 109.47388 * 359.97438 * 7 6 5 9 9 C 1.34224 * 117.00312 * 179.97438 * 8 7 6 10 10 O 1.20827 * 120.00240 * 0.02562 * 9 8 7 11 11 C 1.50708 * 120.00032 * 180.02562 * 9 8 7 12 12 C 1.50695 * 109.46824 * 180.02562 * 11 9 8 13 13 C 1.38325 * 119.96184 * 269.71741 * 12 11 9 14 14 C 1.38284 * 120.13371 * 179.77136 * 13 12 11 15 15 C 1.38119 * 120.07204 * 0.51197 * 14 13 12 16 16 C 1.38858 * 119.92860 * 359.74218 * 15 14 13 17 17 O 1.35749 * 120.06810 * 179.97438 * 16 15 14 18 18 C 1.34831 * 117.00161 * 354.49395 * 17 16 15 19 19 H 1.07995 * 119.99758 * 5.05239 * 18 17 16 20 20 C 1.38649 * 120.00022 * 185.05609 * 18 17 16 21 21 N 1.31556 * 120.00182 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00049 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46815 * 59.99739 * 22 20 18 24 24 H 1.48498 * 109.47387 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47186 * 300.00056 * 22 20 18 26 26 C 1.38076 * 119.97038 * 90.00082 * 12 11 9 27 27 N 1.31784 * 119.12118 * 180.29597 * 2 1 3 28 28 H 1.09002 * 109.47131 * 89.99633 * 1 2 3 29 29 H 1.09000 * 109.47225 * 210.00284 * 1 2 3 30 30 H 1.09003 * 109.46886 * 330.00417 * 1 2 3 31 31 H 1.07999 * 120.44516 * 180.02562 * 4 3 2 32 32 H 1.08003 * 120.79586 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.46966 * 240.00002 * 7 6 5 34 34 H 1.08996 * 109.47264 * 119.99824 * 7 6 5 35 35 H 1.09005 * 109.46548 * 300.00019 * 11 9 8 36 36 H 1.08994 * 109.47018 * 59.99720 * 11 9 8 37 37 H 1.07996 * 119.93352 * 0.02562 * 13 12 11 38 38 H 1.08008 * 119.96234 * 180.26148 * 14 13 12 39 39 H 1.07997 * 120.03366 * 179.76943 * 15 14 13 40 40 H 0.97004 * 119.99654 * 180.02562 * 21 20 18 41 41 H 1.08001 * 120.03133 * 359.95169 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4711 1.1905 -0.0005 5 6 4.1808 -0.0002 -0.0005 6 6 3.4712 -1.1905 -0.0005 7 6 4.1960 -2.5117 0.0001 8 8 5.6290 -2.2777 0.0000 9 6 6.4232 -3.3597 0.0010 10 8 5.9372 -4.4659 0.0015 11 6 7.9213 -3.1950 0.0015 12 6 8.5758 -4.5523 0.0020 13 6 8.8808 -5.1718 1.2006 14 6 9.4772 -6.4194 1.2052 15 6 9.7798 -7.0463 0.0123 16 6 9.4797 -6.4247 -1.1926 17 8 9.7764 -7.0380 -2.3667 18 6 10.4639 -8.1957 -2.2960 19 1 10.6819 -8.6363 -1.3345 20 6 10.8911 -8.8203 -3.4578 21 7 10.6252 -8.2838 -4.6291 22 14 11.8442 -10.4239 -3.3598 23 1 11.0138 -11.4528 -2.6837 24 1 12.1819 -10.8837 -4.7309 25 1 13.0942 -10.2105 -2.5869 26 6 8.8759 -5.1738 -1.1939 27 7 2.1483 -1.1512 -0.0059 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 3.9907 2.1373 -0.0001 32 1 5.2608 -0.0002 -0.0013 33 1 3.9206 -3.0776 -0.8899 34 1 3.9199 -3.0771 0.8901 35 1 8.2265 -2.6450 -0.8887 36 1 8.2258 -2.6439 0.8912 37 1 8.6489 -4.6819 2.1347 38 1 9.7102 -6.9024 2.1428 39 1 10.2490 -8.0190 0.0166 40 1 10.9237 -8.7211 -5.4419 41 1 8.6410 -4.6879 -2.1294 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795565186.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:42 Heat of formation + Delta-G solvation = -37.707334 kcal Electronic energy + Delta-G solvation = -25606.626183 eV Core-core repulsion = 21645.897683 eV Total energy + Delta-G solvation = -3960.728500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 9.18 seconds Orbital eigenvalues (eV) -41.51497 -40.52995 -39.01923 -37.10893 -36.29662 -34.43853 -33.69245 -32.50560 -32.11837 -29.46882 -29.12213 -28.42543 -27.09488 -25.28210 -23.88160 -22.85564 -21.80639 -21.49414 -20.40124 -18.17662 -17.77196 -17.41132 -17.21684 -16.89724 -16.78593 -15.77743 -15.61957 -15.44380 -15.12512 -14.69703 -14.43130 -13.96594 -13.85469 -13.67392 -13.50589 -13.48978 -12.94069 -12.78278 -12.74248 -12.55287 -12.43955 -11.97470 -11.61944 -11.36696 -11.31337 -11.22889 -10.90081 -10.83873 -10.69861 -10.68125 -10.48619 -10.45108 -9.74254 -9.64527 -9.37482 -8.84902 -8.16268 -7.26761 -6.45282 -4.04617 0.51826 0.63788 1.83486 2.23147 2.31538 2.48210 3.13086 3.13972 3.16819 3.31019 3.58690 3.72051 3.95874 4.05229 4.47387 4.55608 4.70736 4.76231 4.90330 4.94016 5.03778 5.06546 5.08833 5.11175 5.16755 5.22499 5.41605 5.44818 5.54224 5.58088 5.69284 5.87294 6.01636 6.11981 6.25197 6.28323 6.60211 6.62025 6.85861 7.03213 7.17783 7.32218 7.40153 7.68940 7.72980 7.77256 7.99129 9.00118 9.69557 10.72618 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.024088 B = 0.001951 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.141941 B =14349.052173 C =14851.761215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.321 3.679 3 N -0.523 5.523 4 C 0.153 3.847 5 C -0.213 4.213 6 C 0.178 3.822 7 C 0.117 3.883 8 O -0.362 6.362 9 C 0.464 3.536 10 O -0.482 6.482 11 C -0.061 4.061 12 C -0.046 4.046 13 C -0.195 4.195 14 C -0.074 4.074 15 C -0.226 4.226 16 C 0.153 3.847 17 O -0.177 6.177 18 C -0.392 4.392 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.172 4.172 27 N -0.515 5.515 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.172 0.828 32 H 0.159 0.841 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.128 0.872 40 H 0.270 0.730 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.213 17.274 10.634 23.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.054 3.946 3 N -0.238 5.238 4 C -0.013 4.013 5 C -0.235 4.235 6 C 0.032 3.968 7 C 0.042 3.958 8 O -0.279 6.279 9 C 0.305 3.695 10 O -0.366 6.366 11 C -0.098 4.098 12 C -0.047 4.047 13 C -0.214 4.214 14 C -0.092 4.092 15 C -0.246 4.246 16 C 0.100 3.900 17 O -0.081 6.081 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.498 5.498 22 Si 0.766 3.234 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.191 4.191 27 N -0.232 5.232 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.189 0.811 32 H 0.177 0.823 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.145 0.855 40 H 0.080 0.920 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.383 16.912 10.123 23.824 hybrid contribution 1.370 -0.960 0.061 1.674 sum -12.013 15.952 10.183 22.416 Atomic orbital electron populations 1.20583 0.85370 1.04300 1.04082 1.23234 0.98190 0.82910 0.90306 1.68273 1.10368 1.30362 1.14757 1.23312 0.89518 0.98821 0.89636 1.22764 1.03974 0.93515 1.03207 1.21137 0.89710 0.94962 0.90954 1.21336 0.77015 0.92281 1.05164 1.86383 1.17941 1.38407 1.85217 1.23925 0.90517 0.82181 0.72864 1.90755 1.76249 1.26349 1.43257 1.20269 0.85501 0.97893 1.06179 1.18640 0.98952 0.93669 0.93416 1.20371 1.07715 0.97345 0.95974 1.20696 0.97153 0.94475 0.96914 1.21212 1.08818 1.02459 0.92095 1.19265 0.92815 0.91287 0.86653 1.83976 1.64046 1.35363 1.24694 1.21272 1.33392 0.97487 0.94699 0.89111 1.25287 0.97431 0.99599 0.94191 1.70030 1.43354 1.38908 0.97468 0.85781 0.79537 0.80209 0.77896 1.19504 1.20279 1.19490 1.19965 1.07117 0.94872 0.97159 1.67822 1.08837 1.31240 1.15290 0.89453 0.89469 0.89472 0.81053 0.82293 0.88049 0.88160 0.86851 0.86985 0.87712 0.87294 0.85481 0.91969 0.86603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.32 36.00 0.37 -0.19 16 2 C 0.32 3.23 7.64 -157.19 -1.20 2.03 16 3 N -0.52 -5.21 10.34 -10.72 -0.11 -5.32 16 4 C 0.15 1.23 11.31 -17.20 -0.19 1.04 16 5 C -0.21 -1.85 9.48 -39.32 -0.37 -2.22 16 6 C 0.18 1.88 6.82 -82.25 -0.56 1.32 16 7 C 0.12 1.26 6.03 36.00 0.22 1.48 16 8 O -0.36 -4.02 8.77 -39.24 -0.34 -4.37 16 9 C 0.46 6.33 7.95 36.01 0.29 6.62 16 10 O -0.48 -8.55 15.78 -18.75 -0.30 -8.85 16 11 C -0.06 -0.75 5.94 -29.03 -0.17 -0.92 16 12 C -0.05 -0.80 4.37 -104.65 -0.46 -1.26 16 13 C -0.20 -3.32 9.70 -39.53 -0.38 -3.70 16 14 C -0.07 -1.36 10.04 -39.61 -0.40 -1.76 16 15 C -0.23 -4.95 9.17 -39.40 -0.36 -5.31 16 16 C 0.15 3.73 6.65 -39.11 -0.26 3.47 16 17 O -0.18 -5.08 9.76 0.05 0.00 -5.08 16 18 C -0.39 -10.98 9.49 30.88 0.29 -10.69 16 19 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -25.32 13.67 55.48 0.76 -24.56 16 22 Si 0.94 20.52 29.55 -169.99 -5.02 15.50 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 26 C -0.17 -3.60 9.64 -39.40 -0.38 -3.98 16 27 N -0.52 -5.80 10.27 -6.99 -0.07 -5.88 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.16 1.12 7.10 -52.48 -0.37 0.74 16 33 H 0.10 1.14 8.13 -51.93 -0.42 0.72 16 34 H 0.10 1.07 8.13 -51.93 -0.42 0.65 16 35 H 0.11 1.16 8.08 -51.93 -0.42 0.74 16 36 H 0.11 1.02 8.08 -51.93 -0.42 0.60 16 37 H 0.10 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 39 H 0.13 2.76 5.64 -52.49 -0.30 2.46 16 40 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.12 2.34 8.06 -52.49 -0.42 1.91 16 LS Contribution 364.85 15.07 5.50 5.50 Total: -1.00 -34.56 364.85 -7.98 -42.54 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -4.72 Total: 3.59 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -3.67 Total: -13.08 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.58 Total: -35.76 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.64 Total: -18.29 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.56 -7.98 -42.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795565186.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.833 kcal (2) G-P(sol) polarization free energy of solvation -34.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.20 seconds