Wall clock time and date at job start Tue Mar 31 2020 14:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31813 * 119.12466 * 2 1 4 4 C 1.32322 * 120.81511 * 180.02562 * 3 2 1 5 5 C 1.38617 * 119.10519 * 359.97438 * 4 3 2 6 6 C 1.38572 * 118.40138 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.44887 * 180.02562 * 6 5 4 8 8 O 1.45202 * 109.47388 * 359.97438 * 7 6 5 9 9 C 1.34224 * 117.00312 * 179.97438 * 8 7 6 10 10 O 1.20827 * 120.00240 * 0.02562 * 9 8 7 11 11 C 1.50708 * 120.00032 * 180.02562 * 9 8 7 12 12 C 1.50695 * 109.46824 * 180.02562 * 11 9 8 13 13 C 1.38325 * 119.96184 * 269.71741 * 12 11 9 14 14 C 1.38284 * 120.13371 * 179.77136 * 13 12 11 15 15 C 1.38119 * 120.07204 * 0.51197 * 14 13 12 16 16 C 1.38858 * 119.92860 * 359.74218 * 15 14 13 17 17 O 1.35749 * 120.06810 * 179.97438 * 16 15 14 18 18 C 1.34831 * 117.00161 * 354.49395 * 17 16 15 19 19 H 1.07995 * 119.99758 * 5.05239 * 18 17 16 20 20 C 1.38649 * 120.00022 * 185.05609 * 18 17 16 21 21 N 1.31556 * 120.00182 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00049 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46815 * 59.99739 * 22 20 18 24 24 H 1.48498 * 109.47387 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47186 * 300.00056 * 22 20 18 26 26 C 1.38076 * 119.97038 * 90.00082 * 12 11 9 27 27 N 1.31784 * 119.12118 * 180.29597 * 2 1 3 28 28 H 1.09002 * 109.47131 * 89.99633 * 1 2 3 29 29 H 1.09000 * 109.47225 * 210.00284 * 1 2 3 30 30 H 1.09003 * 109.46886 * 330.00417 * 1 2 3 31 31 H 1.07999 * 120.44516 * 180.02562 * 4 3 2 32 32 H 1.08003 * 120.79586 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.46966 * 240.00002 * 7 6 5 34 34 H 1.08996 * 109.47264 * 119.99824 * 7 6 5 35 35 H 1.09005 * 109.46548 * 300.00019 * 11 9 8 36 36 H 1.08994 * 109.47018 * 59.99720 * 11 9 8 37 37 H 1.07996 * 119.93352 * 0.02562 * 13 12 11 38 38 H 1.08008 * 119.96234 * 180.26148 * 14 13 12 39 39 H 1.07997 * 120.03366 * 179.76943 * 15 14 13 40 40 H 0.97004 * 119.99654 * 180.02562 * 21 20 18 41 41 H 1.08001 * 120.03133 * 359.95169 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4711 1.1905 -0.0005 5 6 4.1808 -0.0002 -0.0005 6 6 3.4712 -1.1905 -0.0005 7 6 4.1960 -2.5117 0.0001 8 8 5.6290 -2.2777 0.0000 9 6 6.4232 -3.3597 0.0010 10 8 5.9372 -4.4659 0.0015 11 6 7.9213 -3.1950 0.0015 12 6 8.5758 -4.5523 0.0020 13 6 8.8808 -5.1718 1.2006 14 6 9.4772 -6.4194 1.2052 15 6 9.7798 -7.0463 0.0123 16 6 9.4797 -6.4247 -1.1926 17 8 9.7764 -7.0380 -2.3667 18 6 10.4639 -8.1957 -2.2960 19 1 10.6819 -8.6363 -1.3345 20 6 10.8911 -8.8203 -3.4578 21 7 10.6252 -8.2838 -4.6291 22 14 11.8442 -10.4239 -3.3598 23 1 11.0138 -11.4528 -2.6837 24 1 12.1819 -10.8837 -4.7309 25 1 13.0942 -10.2105 -2.5869 26 6 8.8759 -5.1738 -1.1939 27 7 2.1483 -1.1512 -0.0059 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 3.9907 2.1373 -0.0001 32 1 5.2608 -0.0002 -0.0013 33 1 3.9206 -3.0776 -0.8899 34 1 3.9199 -3.0771 0.8901 35 1 8.2265 -2.6450 -0.8887 36 1 8.2258 -2.6439 0.8912 37 1 8.6489 -4.6819 2.1347 38 1 9.7102 -6.9024 2.1428 39 1 10.2490 -8.0190 0.0166 40 1 10.9237 -8.7211 -5.4419 41 1 8.6410 -4.6879 -2.1294 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795565186.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:38 Heat of formation + Delta-G solvation = -59.045870 kcal Electronic energy + Delta-G solvation = -25607.551491 eV Core-core repulsion = 21645.897683 eV Total energy + Delta-G solvation = -3961.653809 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.25264 -41.60977 -40.67336 -38.53759 -37.64210 -35.20058 -34.37452 -34.32980 -33.59822 -30.97161 -30.06820 -29.22862 -28.31247 -27.24862 -24.55345 -23.86494 -23.24981 -22.76195 -21.73916 -19.52963 -19.06426 -18.83054 -18.25414 -17.93380 -17.85469 -16.78585 -16.64395 -16.48420 -16.20892 -16.11696 -16.08965 -15.49170 -15.20750 -14.79228 -14.62948 -14.36433 -14.28476 -14.06340 -13.61984 -13.49594 -13.47709 -13.22892 -12.96530 -12.92122 -12.50103 -12.42678 -12.31148 -12.23659 -12.14250 -11.91688 -11.64872 -11.53556 -11.21672 -10.80072 -10.41801 -10.36986 -9.70065 -9.00009 -8.47097 -6.15662 -0.19257 -0.03642 0.40363 0.73780 1.15946 1.34250 1.37236 1.46570 1.50695 2.17580 2.61554 2.76386 2.92152 3.06395 3.17881 3.39360 3.41307 3.70592 3.80460 3.94422 4.04202 4.09921 4.12233 4.30841 4.34770 4.40177 4.46295 4.52952 4.55282 4.63396 4.69430 4.73499 4.84242 5.01784 5.04601 5.11950 5.24156 5.31759 5.40146 5.62412 5.70065 5.73307 5.93309 6.02094 6.21579 6.67331 6.97418 6.99712 7.78390 8.75962 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.024088 B = 0.001951 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.141941 B =14349.052173 C =14851.761215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.306 3.694 3 N -0.537 5.537 4 C 0.155 3.845 5 C -0.211 4.211 6 C 0.160 3.840 7 C 0.120 3.880 8 O -0.344 6.344 9 C 0.472 3.528 10 O -0.531 6.531 11 C -0.058 4.058 12 C -0.038 4.038 13 C -0.175 4.175 14 C -0.074 4.074 15 C -0.242 4.242 16 C 0.109 3.891 17 O -0.234 6.234 18 C -0.414 4.414 19 H 0.101 0.899 20 C -0.024 4.024 21 N -0.921 5.921 22 Si 1.019 2.981 23 H -0.259 1.259 24 H -0.272 1.272 25 H -0.255 1.255 26 C -0.189 4.189 27 N -0.540 5.540 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.209 0.791 32 H 0.178 0.822 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.137 0.863 36 H 0.161 0.839 37 H 0.153 0.847 38 H 0.146 0.854 39 H 0.118 0.882 40 H 0.272 0.728 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.091 19.345 13.578 26.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.039 3.961 3 N -0.253 5.253 4 C -0.011 4.011 5 C -0.232 4.232 6 C 0.015 3.985 7 C 0.045 3.955 8 O -0.260 6.260 9 C 0.316 3.684 10 O -0.418 6.418 11 C -0.095 4.095 12 C -0.039 4.039 13 C -0.194 4.194 14 C -0.092 4.092 15 C -0.262 4.262 16 C 0.059 3.941 17 O -0.140 6.140 18 C -0.490 4.490 19 H 0.118 0.882 20 C -0.222 4.222 21 N -0.559 5.559 22 Si 0.838 3.162 23 H -0.184 1.184 24 H -0.196 1.196 25 H -0.180 1.180 26 C -0.208 4.208 27 N -0.257 5.257 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.117 0.883 31 H 0.225 0.775 32 H 0.196 0.804 33 H 0.109 0.891 34 H 0.118 0.882 35 H 0.155 0.845 36 H 0.179 0.821 37 H 0.170 0.830 38 H 0.164 0.836 39 H 0.136 0.864 40 H 0.081 0.919 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.278 19.036 13.123 26.662 hybrid contribution 1.174 -1.301 -0.597 1.851 sum -12.104 17.735 12.526 24.859 Atomic orbital electron populations 1.20683 0.83555 1.05058 1.04863 1.23810 0.99504 0.82732 0.90030 1.68363 1.11410 1.30235 1.15245 1.23954 0.89061 1.00122 0.87932 1.22983 1.04840 0.92936 1.02473 1.21162 0.89897 0.95315 0.92156 1.21291 0.76635 0.92830 1.04712 1.86359 1.18070 1.37050 1.84524 1.24131 0.91148 0.81757 0.71412 1.90763 1.77146 1.28185 1.45754 1.20412 0.83932 0.95342 1.09776 1.19136 0.97249 0.95500 0.91991 1.21034 1.04259 0.96352 0.97707 1.21158 0.96116 0.95068 0.96891 1.21341 1.09488 1.02514 0.92807 1.19894 0.94652 0.92903 0.86639 1.83936 1.66519 1.36449 1.27143 1.21774 1.33728 0.97971 0.95539 0.88169 1.26602 0.98417 1.03665 0.93478 1.70182 1.46026 1.41357 0.98371 0.84648 0.78233 0.75009 0.78318 1.18366 1.19602 1.17956 1.20264 1.07368 0.94260 0.98896 1.67813 1.09404 1.32119 1.16358 0.88558 0.89103 0.88279 0.77465 0.80418 0.89138 0.88241 0.84481 0.82137 0.82968 0.83580 0.86439 0.91866 0.87137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.32 71.23 0.74 -0.28 16 2 C 0.31 5.86 7.64 138.75 1.06 6.92 16 3 N -0.54 -9.74 10.34 -187.84 -1.94 -11.68 16 4 C 0.15 2.08 11.31 84.71 0.96 3.04 16 5 C -0.21 -3.13 9.48 22.44 0.21 -2.92 16 6 C 0.16 3.18 6.82 42.56 0.29 3.48 16 7 C 0.12 2.49 6.03 71.23 0.43 2.92 16 8 O -0.34 -6.74 8.77 -51.36 -0.45 -7.19 16 9 C 0.47 11.63 7.95 71.24 0.57 12.20 16 10 O -0.53 -18.24 15.78 21.96 0.35 -17.89 16 11 C -0.06 -1.18 5.94 29.10 0.17 -1.00 16 12 C -0.04 -1.22 4.37 -19.88 -0.09 -1.31 16 13 C -0.18 -5.22 9.70 22.30 0.22 -5.01 16 14 C -0.07 -2.54 10.04 22.25 0.22 -2.32 16 15 C -0.24 -10.72 9.17 22.39 0.21 -10.51 16 16 C 0.11 5.54 6.65 22.58 0.15 5.69 16 17 O -0.23 -14.34 9.76 -22.74 -0.22 -14.56 16 18 C -0.41 -24.53 9.49 67.92 0.64 -23.88 16 19 H 0.10 5.44 5.20 -2.91 -0.02 5.43 16 20 C -0.02 -1.40 5.49 84.83 0.47 -0.94 16 21 N -0.92 -57.26 13.67 21.61 0.30 -56.97 16 22 Si 1.02 43.38 29.55 68.60 2.03 45.40 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 25 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 26 C -0.19 -8.02 9.64 22.39 0.22 -7.81 16 27 N -0.54 -11.85 10.27 -176.03 -1.81 -13.66 16 28 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.10 0.93 8.14 -2.39 -0.02 0.92 16 31 H 0.21 1.08 8.06 -2.91 -0.02 1.06 16 32 H 0.18 1.85 7.10 -2.91 -0.02 1.83 16 33 H 0.09 2.07 8.13 -2.39 -0.02 2.05 16 34 H 0.10 2.07 8.13 -2.39 -0.02 2.05 16 35 H 0.14 2.25 8.08 -2.38 -0.02 2.23 16 36 H 0.16 1.81 8.08 -2.39 -0.02 1.79 16 37 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 38 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 39 H 0.12 5.28 5.64 -2.91 -0.02 5.27 16 40 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 41 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -82.62 364.85 5.78 -76.84 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 1.07 Total: 21.43 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: 6.46 Total: -21.73 kcal Atomic # 7 Polarization: -78.85 SS G_CDS: -3.45 Total: -82.30 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -0.33 Total: -39.65 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -82.62 5.78 -76.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795565186.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.795 kcal (2) G-P(sol) polarization free energy of solvation -82.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds