Wall clock time and date at job start Tue Mar 31 2020 16:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46508 * 109.46845 * 154.06443 * 3 2 1 5 5 C 1.37100 * 119.99870 * 84.44883 * 4 3 2 6 6 H 1.07999 * 119.99942 * 164.69725 * 5 4 3 7 7 C 1.38951 * 120.00147 * 344.69361 * 5 4 3 8 8 N 1.31414 * 120.00048 * 0.63651 * 7 5 4 9 9 Si 1.86800 * 120.00037 * 180.63186 * 7 5 4 10 10 H 1.48499 * 109.47135 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47124 * 120.00323 * 9 7 5 12 12 H 1.48496 * 109.47240 * 240.00087 * 9 7 5 13 13 C 1.34775 * 120.00068 * 264.45164 * 4 3 2 14 14 O 1.21291 * 120.00139 * 184.42657 * 13 4 3 15 15 C 1.50703 * 119.99819 * 4.14979 * 13 4 3 16 16 H 1.08998 * 109.58100 * 40.00783 * 15 13 4 17 17 C 1.53539 * 109.57944 * 279.60824 * 15 13 4 18 18 N 1.47301 * 107.57082 * 181.99187 * 17 15 13 19 19 C 1.34775 * 121.16164 * 221.96104 * 18 17 15 20 20 C 1.50699 * 120.00129 * 3.33206 * 19 18 17 21 21 O 1.21299 * 119.99671 * 183.33713 * 19 18 17 22 22 C 1.40559 * 117.66934 * 41.97606 * 18 17 15 23 23 C 1.38582 * 120.08283 * 166.33931 * 22 18 17 24 24 C 1.38251 * 119.87278 * 179.82689 * 23 22 18 25 25 C 1.38278 * 120.06344 * 359.97438 * 24 23 22 26 26 C 1.38197 * 120.29429 * 0.06692 * 25 24 23 27 27 C 1.38701 * 120.05458 * 359.97438 * 26 25 24 28 28 O 1.35899 * 119.66449 * 179.84131 * 27 26 25 29 29 H 4.40647 * 5.51501 * 179.97438 * 4 1 2 30 30 H 1.08995 * 109.47867 * 34.06663 * 3 2 1 31 31 H 1.09002 * 109.47158 * 274.05837 * 3 2 1 32 32 H 0.97000 * 120.00031 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.83666 * 301.50659 * 17 15 13 34 34 H 1.09007 * 109.83863 * 62.47132 * 17 15 13 35 35 H 1.08992 * 109.47434 * 354.53726 * 20 19 18 36 36 H 1.08998 * 109.46876 * 114.54471 * 20 19 18 37 37 H 1.09007 * 109.46594 * 234.53822 * 20 19 18 38 38 H 1.07994 * 120.06086 * 359.80295 * 23 22 18 39 39 H 1.08000 * 119.96698 * 179.97438 * 24 23 22 40 40 H 1.08004 * 119.85120 * 180.02562 * 25 24 23 41 41 H 1.08008 * 119.97185 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2431 -0.6041 5 6 3.2534 2.3756 0.1592 6 1 3.8335 3.2117 -0.2024 7 6 2.6283 2.4477 1.3981 8 7 1.9326 1.4257 1.8435 9 14 2.7767 3.9975 2.4303 10 1 3.6071 4.9951 1.7089 11 1 1.4248 4.5621 2.6729 12 1 3.4157 3.6676 3.7295 13 6 3.4647 1.2727 -1.9103 14 8 3.9438 2.2775 -2.3919 15 6 3.2453 0.0552 -2.7709 16 1 2.2965 -0.4122 -2.5075 17 6 4.3917 -0.9426 -2.5527 18 7 4.1593 -2.0895 -3.4473 19 6 4.3550 -3.3543 -3.0250 20 6 4.7469 -3.6187 -1.5940 21 8 4.2158 -4.2798 -3.7966 22 6 3.7266 -1.8186 -4.7570 23 6 3.7627 -2.8141 -5.7203 24 6 3.3327 -2.5439 -7.0062 25 6 2.8670 -1.2829 -7.3303 26 6 2.8297 -0.2864 -6.3735 27 6 3.2598 -0.5478 -5.0811 28 8 3.2228 0.4389 -4.1473 29 1 -1.0502 -0.0004 0.0000 30 1 3.0098 -0.8504 -0.5756 31 1 3.0094 -0.0719 1.0251 32 1 1.4959 1.4762 2.7082 33 1 5.3439 -0.4709 -2.7957 34 1 4.3980 -1.2777 -1.5155 35 1 4.9179 -2.6713 -1.0831 36 1 3.9464 -4.1627 -1.0927 37 1 5.6600 -4.2137 -1.5715 38 1 4.1264 -3.7990 -5.4672 39 1 3.3605 -3.3185 -7.7583 40 1 2.5315 -1.0757 -8.3358 41 1 2.4646 0.6967 -6.6322 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798803461.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:17 Heat of formation + Delta-G solvation = 31.107193 kcal Electronic energy + Delta-G solvation = -28507.650341 eV Core-core repulsion = 24549.905863 eV Total energy + Delta-G solvation = -3957.744478 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.45475 -39.36809 -38.71118 -37.15863 -35.62824 -35.29665 -32.30018 -31.55886 -31.35434 -30.68412 -29.61547 -27.97821 -26.61976 -25.49649 -24.08780 -23.19381 -21.60544 -19.83099 -19.38991 -18.26738 -17.92883 -17.59245 -17.19432 -16.60800 -16.10885 -15.71012 -15.65465 -15.14118 -14.88851 -14.36166 -14.26412 -14.13718 -13.89393 -13.74248 -13.36532 -13.27092 -13.01175 -12.59880 -12.43608 -12.31154 -12.18157 -11.83069 -11.65204 -11.44989 -11.36393 -11.22678 -10.86276 -10.63184 -10.45495 -10.20956 -9.70106 -9.51405 -9.37805 -8.91506 -8.67191 -8.40221 -8.14528 -7.75916 -6.45091 -4.09780 1.28289 1.49632 2.44229 2.51217 2.94874 3.05632 3.17341 3.25069 3.51025 3.71910 3.88727 3.95677 4.07890 4.25572 4.48888 4.57942 4.80430 4.87255 4.90642 5.05482 5.09689 5.13789 5.24275 5.32975 5.35839 5.44627 5.45380 5.60048 5.64923 5.72683 5.88487 6.03406 6.21964 6.34567 6.47230 6.61685 6.72270 6.92445 6.96044 7.11874 7.36647 7.50397 7.78272 7.88938 8.19493 8.75183 8.88936 9.08339 9.57464 10.47910 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.016832 B = 0.004038 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.065046 B = 6932.342173 C = 7659.310062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.103 4.103 3 C 0.228 3.772 4 N -0.433 5.433 5 C -0.305 4.305 6 H 0.110 0.890 7 C 0.031 3.969 8 N -0.873 5.873 9 Si 0.935 3.065 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.455 3.545 14 O -0.554 6.554 15 C 0.072 3.928 16 H 0.091 0.909 17 C 0.068 3.932 18 N -0.552 5.552 19 C 0.519 3.481 20 C -0.180 4.180 21 O -0.527 6.527 22 C 0.071 3.929 23 C -0.119 4.119 24 C -0.140 4.140 25 C -0.106 4.106 26 C -0.131 4.131 27 C 0.104 3.896 28 O -0.280 6.280 29 H 0.198 0.802 30 H 0.048 0.952 31 H 0.131 0.869 32 H 0.271 0.729 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.170 0.830 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.460 -9.849 -6.341 11.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.105 4.105 3 C 0.105 3.895 4 N -0.152 5.152 5 C -0.432 4.432 6 H 0.127 0.873 7 C -0.172 4.172 8 N -0.513 5.513 9 Si 0.761 3.239 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.205 1.205 13 C 0.240 3.760 14 O -0.435 6.435 15 C 0.011 3.989 16 H 0.109 0.891 17 C -0.054 4.054 18 N -0.277 5.277 19 C 0.310 3.690 20 C -0.239 4.239 21 O -0.405 6.405 22 C -0.022 4.022 23 C -0.138 4.138 24 C -0.158 4.158 25 C -0.125 4.125 26 C -0.150 4.150 27 C 0.057 3.943 28 O -0.193 6.193 29 H 0.215 0.785 30 H 0.066 0.934 31 H 0.148 0.852 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.137 0.863 35 H 0.105 0.895 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.186 0.814 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.590 -9.665 -6.706 12.045 hybrid contribution -0.514 0.638 0.883 1.205 sum 2.075 -9.027 -5.822 10.940 Atomic orbital electron populations 1.24263 0.95401 1.03228 1.05883 1.22896 0.94116 0.97557 0.95937 1.18710 0.84894 0.84676 1.01187 1.43659 1.55488 1.10211 1.05876 1.19846 1.30529 0.94297 0.98503 0.87259 1.25366 0.95050 0.98928 0.97812 1.69883 1.31882 1.29329 1.20163 0.85710 0.78269 0.80862 0.79036 1.19111 1.20597 1.20531 1.19064 0.86718 0.87971 0.82210 1.90589 1.47551 1.33428 1.71964 1.22645 0.98856 0.96003 0.81434 0.89110 1.22971 1.00254 0.86114 0.96086 1.45880 1.63990 1.07088 1.10762 1.20997 0.76098 0.80810 0.91070 1.22062 1.04963 1.04888 0.91969 1.90489 1.51047 1.43094 1.55826 1.18075 1.04009 0.94918 0.85235 1.21992 0.99601 1.00810 0.91407 1.21030 1.01649 0.96947 0.96218 1.20924 0.99946 0.92762 0.98819 1.20419 1.03225 1.00927 0.90421 1.18780 0.98267 0.86644 0.90643 1.86148 1.88632 1.30796 1.13696 0.78491 0.93386 0.85182 0.91758 0.88313 0.86297 0.89533 0.87767 0.87994 0.81359 0.85761 0.85532 0.84739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.40 19.25 29.55 0.57 -4.83 16 2 C -0.10 -2.18 10.73 -37.12 -0.40 -2.58 16 3 C 0.23 4.53 4.85 -6.83 -0.03 4.50 16 4 N -0.43 -9.99 2.60 -117.93 -0.31 -10.29 16 5 C -0.30 -7.73 9.45 -14.93 -0.14 -7.87 16 6 H 0.11 2.93 7.24 -52.49 -0.38 2.55 16 7 C 0.03 0.75 5.36 -17.47 -0.09 0.66 16 8 N -0.87 -20.75 8.05 55.50 0.45 -20.30 16 9 Si 0.93 19.42 29.55 -169.99 -5.02 14.40 16 10 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 11 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 12 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 13 C 0.45 10.42 6.90 -10.98 -0.08 10.34 16 14 O -0.55 -14.81 16.25 -13.43 -0.22 -15.03 16 15 C 0.07 1.35 2.50 -27.60 -0.07 1.28 16 16 H 0.09 1.69 7.04 -51.93 -0.37 1.33 16 17 C 0.07 1.02 5.42 -3.32 -0.02 1.00 16 18 N -0.55 -8.31 3.01 -112.33 -0.34 -8.65 16 19 C 0.52 7.10 7.76 -10.99 -0.09 7.02 16 20 C -0.18 -1.67 10.08 36.01 0.36 -1.30 16 21 O -0.53 -8.41 13.81 5.54 0.08 -8.33 16 22 C 0.07 1.17 6.34 -83.37 -0.53 0.64 16 23 C -0.12 -1.79 9.02 -39.45 -0.36 -2.15 16 24 C -0.14 -1.79 10.05 -39.56 -0.40 -2.19 16 25 C -0.11 -1.32 10.03 -39.58 -0.40 -1.71 16 26 C -0.13 -1.95 9.97 -39.43 -0.39 -2.34 16 27 C 0.10 1.81 6.52 -39.05 -0.25 1.56 16 28 O -0.28 -5.61 9.58 -38.40 -0.37 -5.98 16 29 H 0.20 3.28 7.80 -54.08 -0.42 2.86 16 30 H 0.05 0.77 4.50 -51.93 -0.23 0.53 16 31 H 0.13 2.71 6.35 -51.93 -0.33 2.38 16 32 H 0.27 6.23 8.31 -40.82 -0.34 5.90 16 33 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 34 H 0.12 1.47 3.54 -51.93 -0.18 1.29 16 35 H 0.09 0.71 5.31 -51.93 -0.28 0.44 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.10 0.78 8.14 -51.92 -0.42 0.35 16 38 H 0.17 2.62 4.93 -53.48 -0.26 2.36 16 39 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 41 H 0.13 1.84 8.06 -52.48 -0.42 1.41 16 LS Contribution 342.02 15.07 5.15 5.15 Total: -1.00 -31.49 342.02 -7.01 -38.50 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -4.13 Total: 8.48 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -2.31 Total: 2.04 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: -0.20 Total: -39.24 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.51 Total: -29.33 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.49 -7.01 -38.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798803461.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.607 kcal (2) G-P(sol) polarization free energy of solvation -31.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds