Wall clock time and date at job start Tue Mar 31 2020 16:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46508 * 109.46845 * 154.06443 * 3 2 1 5 5 C 1.37100 * 119.99870 * 84.44883 * 4 3 2 6 6 H 1.07999 * 119.99942 * 164.69725 * 5 4 3 7 7 C 1.38951 * 120.00147 * 344.69361 * 5 4 3 8 8 N 1.31414 * 120.00048 * 0.63651 * 7 5 4 9 9 Si 1.86800 * 120.00037 * 180.63186 * 7 5 4 10 10 H 1.48499 * 109.47135 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47124 * 120.00323 * 9 7 5 12 12 H 1.48496 * 109.47240 * 240.00087 * 9 7 5 13 13 C 1.34775 * 120.00068 * 264.45164 * 4 3 2 14 14 O 1.21291 * 120.00139 * 184.42657 * 13 4 3 15 15 C 1.50703 * 119.99819 * 4.14979 * 13 4 3 16 16 H 1.08998 * 109.58100 * 40.00783 * 15 13 4 17 17 C 1.53539 * 109.57944 * 279.60824 * 15 13 4 18 18 N 1.47301 * 107.57082 * 181.99187 * 17 15 13 19 19 C 1.34775 * 121.16164 * 221.96104 * 18 17 15 20 20 C 1.50699 * 120.00129 * 3.33206 * 19 18 17 21 21 O 1.21299 * 119.99671 * 183.33713 * 19 18 17 22 22 C 1.40559 * 117.66934 * 41.97606 * 18 17 15 23 23 C 1.38582 * 120.08283 * 166.33931 * 22 18 17 24 24 C 1.38251 * 119.87278 * 179.82689 * 23 22 18 25 25 C 1.38278 * 120.06344 * 359.97438 * 24 23 22 26 26 C 1.38197 * 120.29429 * 0.06692 * 25 24 23 27 27 C 1.38701 * 120.05458 * 359.97438 * 26 25 24 28 28 O 1.35899 * 119.66449 * 179.84131 * 27 26 25 29 29 H 4.40647 * 5.51501 * 179.97438 * 4 1 2 30 30 H 1.08995 * 109.47867 * 34.06663 * 3 2 1 31 31 H 1.09002 * 109.47158 * 274.05837 * 3 2 1 32 32 H 0.97000 * 120.00031 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.83666 * 301.50659 * 17 15 13 34 34 H 1.09007 * 109.83863 * 62.47132 * 17 15 13 35 35 H 1.08992 * 109.47434 * 354.53726 * 20 19 18 36 36 H 1.08998 * 109.46876 * 114.54471 * 20 19 18 37 37 H 1.09007 * 109.46594 * 234.53822 * 20 19 18 38 38 H 1.07994 * 120.06086 * 359.80295 * 23 22 18 39 39 H 1.08000 * 119.96698 * 179.97438 * 24 23 22 40 40 H 1.08004 * 119.85120 * 180.02562 * 25 24 23 41 41 H 1.08008 * 119.97185 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2431 -0.6041 5 6 3.2534 2.3756 0.1592 6 1 3.8335 3.2117 -0.2024 7 6 2.6283 2.4477 1.3981 8 7 1.9326 1.4257 1.8435 9 14 2.7767 3.9975 2.4303 10 1 3.6071 4.9951 1.7089 11 1 1.4248 4.5621 2.6729 12 1 3.4157 3.6676 3.7295 13 6 3.4647 1.2727 -1.9103 14 8 3.9438 2.2775 -2.3919 15 6 3.2453 0.0552 -2.7709 16 1 2.2965 -0.4122 -2.5075 17 6 4.3917 -0.9426 -2.5527 18 7 4.1593 -2.0895 -3.4473 19 6 4.3550 -3.3543 -3.0250 20 6 4.7469 -3.6187 -1.5940 21 8 4.2158 -4.2798 -3.7966 22 6 3.7266 -1.8186 -4.7570 23 6 3.7627 -2.8141 -5.7203 24 6 3.3327 -2.5439 -7.0062 25 6 2.8670 -1.2829 -7.3303 26 6 2.8297 -0.2864 -6.3735 27 6 3.2598 -0.5478 -5.0811 28 8 3.2228 0.4389 -4.1473 29 1 -1.0502 -0.0004 0.0000 30 1 3.0098 -0.8504 -0.5756 31 1 3.0094 -0.0719 1.0251 32 1 1.4959 1.4762 2.7082 33 1 5.3439 -0.4709 -2.7957 34 1 4.3980 -1.2777 -1.5155 35 1 4.9179 -2.6713 -1.0831 36 1 3.9464 -4.1627 -1.0927 37 1 5.6600 -4.2137 -1.5715 38 1 4.1264 -3.7990 -5.4672 39 1 3.3605 -3.3185 -7.7583 40 1 2.5315 -1.0757 -8.3358 41 1 2.4646 0.6967 -6.6322 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798803461.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:16 Heat of formation + Delta-G solvation = 13.254619 kcal Electronic energy + Delta-G solvation = -28508.424487 eV Core-core repulsion = 24549.905863 eV Total energy + Delta-G solvation = -3958.518624 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.68412 -40.83221 -40.06959 -38.44444 -37.25936 -36.68573 -34.04541 -33.19834 -32.49167 -31.96351 -30.70058 -29.12395 -28.25529 -27.06524 -25.58852 -24.32441 -22.83395 -21.28306 -20.62427 -19.88731 -19.36100 -18.86982 -18.61066 -18.15967 -17.40541 -17.06354 -16.90221 -16.62878 -16.16166 -15.87424 -15.75378 -15.50783 -15.21150 -14.96641 -14.70575 -14.50129 -14.37464 -14.12620 -13.87125 -13.49081 -13.22305 -13.08874 -12.93487 -12.88577 -12.75076 -12.50350 -12.49035 -12.15813 -12.12308 -11.48886 -11.35709 -11.06647 -10.72025 -10.55771 -10.40423 -9.96383 -9.56232 -8.94455 -8.28605 -6.01349 0.17473 0.34137 1.20288 1.40317 1.41464 1.44151 1.52209 1.64879 1.89051 2.16165 2.30542 2.41426 2.75716 2.99166 3.03688 3.20878 3.28094 3.52674 3.65768 3.76957 3.88398 3.94320 4.11932 4.25102 4.27619 4.33971 4.42973 4.51173 4.52966 4.59852 4.77547 4.96747 5.09214 5.13529 5.26143 5.40715 5.41274 5.42773 5.53837 5.77753 5.93999 6.03962 6.26246 6.38565 6.81428 7.03613 7.14006 7.26172 7.76778 8.60716 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.016832 B = 0.004038 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.065046 B = 6932.342173 C = 7659.310062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.138 4.138 3 C 0.229 3.771 4 N -0.436 5.436 5 C -0.341 4.341 6 H 0.082 0.918 7 C 0.008 3.992 8 N -0.872 5.872 9 Si 0.990 3.010 10 H -0.277 1.277 11 H -0.280 1.280 12 H -0.264 1.264 13 C 0.447 3.553 14 O -0.605 6.605 15 C 0.082 3.918 16 H 0.091 0.909 17 C 0.079 3.921 18 N -0.555 5.555 19 C 0.513 3.487 20 C -0.175 4.175 21 O -0.552 6.552 22 C 0.055 3.945 23 C -0.132 4.132 24 C -0.129 4.129 25 C -0.095 4.095 26 C -0.139 4.139 27 C 0.068 3.932 28 O -0.311 6.311 29 H 0.227 0.773 30 H 0.087 0.913 31 H 0.122 0.878 32 H 0.275 0.725 33 H 0.095 0.905 34 H 0.147 0.853 35 H 0.096 0.904 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.165 0.835 39 H 0.158 0.842 40 H 0.166 0.834 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.960 -11.664 -6.344 13.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.140 4.140 3 C 0.108 3.892 4 N -0.154 5.154 5 C -0.468 4.468 6 H 0.099 0.901 7 C -0.194 4.194 8 N -0.510 5.510 9 Si 0.814 3.186 10 H -0.202 1.202 11 H -0.206 1.206 12 H -0.189 1.189 13 C 0.235 3.765 14 O -0.491 6.491 15 C 0.021 3.979 16 H 0.109 0.891 17 C -0.043 4.043 18 N -0.280 5.280 19 C 0.307 3.693 20 C -0.233 4.233 21 O -0.431 6.431 22 C -0.039 4.039 23 C -0.152 4.152 24 C -0.147 4.147 25 C -0.114 4.114 26 C -0.158 4.158 27 C 0.022 3.978 28 O -0.225 6.225 29 H 0.244 0.756 30 H 0.105 0.895 31 H 0.140 0.860 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.164 0.836 35 H 0.115 0.885 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.182 0.818 39 H 0.176 0.824 40 H 0.183 0.817 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.076 -11.537 -6.685 13.494 hybrid contribution -0.431 1.155 0.793 1.466 sum 1.645 -10.381 -5.892 12.050 Atomic orbital electron populations 1.25087 0.96434 1.01970 1.04736 1.23337 0.94977 0.98689 0.97006 1.18804 0.84679 0.84498 1.01216 1.43788 1.54926 1.10707 1.06019 1.19721 1.32208 0.94986 0.99847 0.90053 1.25939 0.94339 1.01241 0.97926 1.70003 1.30979 1.29823 1.20218 0.84911 0.77896 0.77746 0.78030 1.20202 1.20602 1.18853 1.19696 0.85678 0.88728 0.82426 1.90539 1.49794 1.35711 1.73038 1.22361 1.00214 0.94459 0.80864 0.89143 1.22867 0.98362 0.85551 0.97562 1.45993 1.64216 1.07482 1.10337 1.21840 0.75097 0.79800 0.92556 1.22169 1.06386 1.06000 0.88743 1.90473 1.52158 1.43483 1.56960 1.18320 1.04348 0.94924 0.86294 1.22119 1.00413 1.00333 0.92292 1.21464 0.99479 0.97872 0.95899 1.21328 0.98449 0.91771 0.99831 1.20749 1.02925 1.02014 0.90113 1.19131 1.00777 0.86899 0.91035 1.86084 1.89534 1.32595 1.14264 0.75643 0.89540 0.86020 0.91431 0.88682 0.83614 0.88511 0.86124 0.85921 0.81789 0.82421 0.81693 0.84278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -10.21 19.25 74.32 1.43 -8.78 16 2 C -0.14 -5.75 10.73 31.12 0.33 -5.42 16 3 C 0.23 9.05 4.85 84.57 0.41 9.46 16 4 N -0.44 -20.61 2.60 -645.40 -1.68 -22.29 16 5 C -0.34 -17.81 9.45 84.04 0.79 -17.02 16 6 H 0.08 4.62 7.24 -2.91 -0.02 4.60 16 7 C 0.01 0.40 5.36 84.93 0.46 0.86 16 8 N -0.87 -40.81 8.05 21.66 0.17 -40.64 16 9 Si 0.99 39.78 29.55 68.60 2.03 41.81 16 10 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 11 H -0.28 -11.24 7.11 99.48 0.71 -10.54 16 12 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 13 C 0.45 21.32 6.90 87.66 0.60 21.93 16 14 O -0.61 -34.27 16.25 15.08 0.25 -34.02 16 15 C 0.08 3.16 2.50 30.03 0.08 3.24 16 16 H 0.09 3.43 7.04 -2.39 -0.02 3.41 16 17 C 0.08 2.36 5.42 86.41 0.47 2.83 16 18 N -0.56 -16.39 3.01 -627.69 -1.89 -18.28 16 19 C 0.51 13.34 7.76 87.66 0.68 14.02 16 20 C -0.17 -2.76 10.08 71.24 0.72 -2.04 16 21 O -0.55 -16.99 13.81 -3.09 -0.04 -17.03 16 22 C 0.05 1.80 6.34 38.06 0.24 2.04 16 23 C -0.13 -3.84 9.02 22.35 0.20 -3.64 16 24 C -0.13 -2.96 10.05 22.28 0.22 -2.74 16 25 C -0.10 -2.13 10.03 22.27 0.22 -1.91 16 26 C -0.14 -4.06 9.97 22.37 0.22 -3.84 16 27 C 0.07 2.41 6.52 22.61 0.15 2.56 16 28 O -0.31 -12.95 9.58 -74.27 -0.71 -13.67 16 29 H 0.23 6.97 7.80 -4.41 -0.03 6.93 16 30 H 0.09 2.65 4.50 -2.39 -0.01 2.64 16 31 H 0.12 4.99 6.35 -2.39 -0.02 4.98 16 32 H 0.27 12.26 8.31 -92.71 -0.77 11.49 16 33 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 34 H 0.15 3.39 3.54 -2.38 -0.01 3.38 16 35 H 0.10 1.31 5.31 -2.39 -0.01 1.30 16 36 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.17 4.96 4.93 -18.59 -0.09 4.87 16 39 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 40 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 41 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -71.33 342.02 6.37 -64.97 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 1.01 Total: 27.62 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 7.23 Total: 11.53 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -3.39 Total: -81.21 kcal Atomic # 8 Polarization: -64.21 SS G_CDS: -0.51 Total: -64.72 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -71.33 6.37 -64.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798803461.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.222 kcal (2) G-P(sol) polarization free energy of solvation -71.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds