Wall clock time and date at job start Tue Mar 31 2020 15:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47188 * 99.69469 * 3 2 1 5 5 C 1.37100 * 119.99925 * 264.13439 * 4 3 2 6 6 H 1.07997 * 119.99971 * 197.43528 * 5 4 3 7 7 C 1.38950 * 119.99936 * 17.43735 * 5 4 3 8 8 N 1.31413 * 119.99841 * 21.52317 * 7 5 4 9 9 Si 1.86794 * 120.00108 * 201.52358 * 7 5 4 10 10 H 1.48496 * 109.47599 * 89.99908 * 9 7 5 11 11 H 1.48504 * 109.47108 * 210.00043 * 9 7 5 12 12 H 1.48504 * 109.46824 * 329.99895 * 9 7 5 13 13 C 1.34770 * 120.00058 * 84.13972 * 4 3 2 14 14 O 1.21293 * 120.00277 * 180.02562 * 13 4 3 15 15 C 1.50707 * 120.00352 * 359.97438 * 13 4 3 16 16 N 1.46497 * 109.47228 * 180.02562 * 15 13 4 17 17 C 1.40132 * 120.32828 * 90.00761 * 16 15 13 18 18 C 1.38526 * 120.65192 * 48.54413 * 17 16 15 19 19 C 1.38280 * 119.85495 * 180.33032 * 18 17 16 20 20 C 1.38268 * 120.16882 * 0.03743 * 19 18 17 21 21 C 1.38290 * 120.26204 * 359.88181 * 20 19 18 22 22 C 1.38456 * 119.92430 * 0.28572 * 21 20 19 23 23 O 1.35916 * 120.49348 * 180.70949 * 22 21 20 24 24 C 1.42541 * 117.43756 * 104.18869 * 23 22 21 25 25 C 1.52717 * 110.45196 * 43.70177 * 24 23 22 26 26 C 1.35180 * 120.32442 * 269.97630 * 16 15 13 27 27 O 1.21298 * 120.17138 * 3.63814 * 26 16 15 28 28 H 4.40637 * 5.51422 * 180.02562 * 4 1 2 29 29 H 1.08999 * 109.47661 * 339.69002 * 3 2 1 30 30 H 1.09007 * 109.47187 * 219.69004 * 3 2 1 31 31 H 0.96999 * 120.00237 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.46759 * 60.00151 * 15 13 4 33 33 H 1.08998 * 109.46906 * 300.01113 * 15 13 4 34 34 H 1.08004 * 120.07489 * 0.34816 * 18 17 16 35 35 H 1.08001 * 119.91570 * 180.02562 * 19 18 17 36 36 H 1.08000 * 119.87130 * 179.89328 * 20 19 18 37 37 H 1.07991 * 120.04348 * 180.02562 * 21 20 19 38 38 H 1.09004 * 109.30993 * 283.40460 * 24 23 22 39 39 H 1.08996 * 109.31135 * 164.00789 * 24 23 22 40 40 H 1.09000 * 109.36678 * 283.74420 * 25 24 23 41 41 H 1.08992 * 109.37395 * 164.11836 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1342 0.2335 -1.3615 5 6 3.4776 -0.8286 -2.1576 6 1 4.0900 -0.6714 -3.0331 7 6 3.0376 -2.1073 -1.8379 8 7 1.9863 -2.2664 -1.0657 9 14 3.9405 -3.5999 -2.5059 10 1 5.0089 -3.9988 -1.5548 11 1 2.9834 -4.7228 -2.6745 12 1 4.5468 -3.2647 -3.8194 13 6 3.2459 1.4917 -1.8314 14 8 3.6497 1.6844 -2.9588 15 6 2.8680 2.6592 -0.9565 16 7 3.0772 3.9086 -1.6923 17 6 2.0438 4.4569 -2.4638 18 6 0.7697 4.5989 -1.9391 19 6 -0.2394 5.1358 -2.7173 20 6 0.0204 5.5300 -4.0169 21 6 1.2906 5.3925 -4.5461 22 6 2.3056 4.8526 -3.7746 23 8 3.5616 4.7254 -4.2783 24 6 4.5435 5.6603 -3.8382 25 6 4.4425 5.8696 -2.3288 26 6 4.2687 4.5442 -1.6332 27 8 5.1937 4.0501 -1.0236 28 1 -1.0500 0.0002 0.0001 29 1 3.0098 -0.9629 0.3567 30 1 3.0089 0.7917 0.6563 31 1 1.6793 -3.1590 -0.8422 32 1 3.4880 2.6569 -0.0600 33 1 1.8189 2.5760 -0.6729 34 1 0.5649 4.2912 -0.9242 35 1 -1.2330 5.2473 -2.3090 36 1 -0.7717 5.9471 -4.6210 37 1 1.4897 5.7019 -5.5614 38 1 4.3873 6.6126 -4.3452 39 1 5.5361 5.2832 -4.0842 40 1 3.5870 6.5081 -2.1089 41 1 5.3520 6.3503 -1.9688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798804897.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:56 Heat of formation + Delta-G solvation = 15.149207 kcal Electronic energy + Delta-G solvation = -28738.875299 eV Core-core repulsion = 24780.438830 eV Total energy + Delta-G solvation = -3958.436469 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.20333 -38.91234 -38.28756 -37.43094 -35.46039 -34.77011 -32.19942 -31.91544 -31.21563 -30.35092 -29.76562 -27.46525 -26.33771 -24.93137 -24.05618 -22.63301 -21.90193 -20.38707 -19.04255 -17.89391 -17.38325 -17.08994 -16.83156 -16.74402 -16.44794 -15.92792 -15.23761 -14.87699 -14.65719 -14.45732 -14.25626 -14.13243 -13.89439 -13.57951 -13.32530 -12.97125 -12.65174 -12.45705 -12.24013 -12.11961 -11.95377 -11.69140 -11.58900 -11.32500 -11.15820 -10.98943 -10.45894 -10.40936 -10.26652 -9.86573 -9.61996 -9.35989 -9.26219 -8.91019 -8.78310 -8.48338 -7.83853 -7.80966 -6.30340 -3.81853 1.13250 1.25897 2.61988 2.99103 3.18157 3.28247 3.33885 3.44609 3.68370 3.84995 3.90890 4.01168 4.21249 4.41795 4.71898 4.78588 4.85454 4.95866 4.99705 5.06653 5.18800 5.30191 5.35845 5.39372 5.43239 5.51819 5.64835 5.65964 5.74281 5.77974 5.84987 6.17306 6.22156 6.30033 6.42329 6.57347 6.73441 6.75572 6.99881 7.38142 7.60029 7.65829 8.04888 8.21397 8.46690 8.76988 9.17350 9.37715 9.93098 10.70688 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.014190 B = 0.004467 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.751779 B = 6266.987141 C = 6831.659445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.115 4.115 3 C 0.229 3.771 4 N -0.440 5.440 5 C -0.310 4.310 6 H 0.103 0.897 7 C 0.031 3.969 8 N -0.864 5.864 9 Si 0.921 3.079 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.438 3.562 14 O -0.559 6.559 15 C 0.100 3.900 16 N -0.536 5.536 17 C 0.129 3.871 18 C -0.120 4.120 19 C -0.109 4.109 20 C -0.118 4.118 21 C -0.119 4.119 22 C 0.096 3.904 23 O -0.313 6.313 24 C 0.077 3.923 25 C -0.179 4.179 26 C 0.530 3.470 27 O -0.521 6.521 28 H 0.199 0.801 29 H 0.112 0.888 30 H 0.060 0.940 31 H 0.268 0.732 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.067 0.933 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.153 17.065 0.599 17.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.116 4.116 3 C 0.105 3.895 4 N -0.160 5.160 5 C -0.437 4.437 6 H 0.121 0.879 7 C -0.173 4.173 8 N -0.503 5.503 9 Si 0.748 3.252 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.225 3.775 14 O -0.440 6.440 15 C -0.025 4.025 16 N -0.262 5.262 17 C 0.035 3.965 18 C -0.140 4.140 19 C -0.127 4.127 20 C -0.136 4.136 21 C -0.138 4.138 22 C 0.051 3.949 23 O -0.229 6.229 24 C 0.002 3.998 25 C -0.219 4.219 26 C 0.319 3.681 27 O -0.396 6.396 28 H 0.217 0.783 29 H 0.130 0.870 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.085 0.915 39 H 0.124 0.876 40 H 0.111 0.889 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.374 16.554 0.342 16.898 hybrid contribution -0.150 -1.037 -0.081 1.051 sum -3.524 15.518 0.262 15.915 Atomic orbital electron populations 1.24268 0.95333 1.05894 1.02329 1.23213 0.94350 0.95895 0.98160 1.18288 0.84272 1.02187 0.84716 1.43666 1.56439 1.04623 1.11307 1.19657 1.29873 0.84307 1.09860 0.87899 1.25263 0.95194 0.99113 0.97747 1.70080 1.19793 1.23249 1.37147 0.86003 0.79164 0.80541 0.79504 1.20332 1.21137 1.19445 1.20256 0.85030 0.83951 0.88282 1.90588 1.49663 1.84235 1.19563 1.21528 1.02919 0.82801 0.95223 1.45096 1.11334 1.22598 1.47131 1.18170 0.89450 0.98686 0.90169 1.20969 0.91639 1.00844 1.00585 1.21005 0.98754 0.98789 0.94175 1.21004 0.96126 1.00857 0.95653 1.21148 0.92905 0.99259 1.00528 1.18733 0.86266 1.00004 0.89926 1.86120 1.16112 1.53579 1.67057 1.22727 0.92848 0.93271 0.90986 1.22447 1.05922 0.95881 0.97658 1.20422 0.81315 0.86189 0.80220 1.90717 1.38440 1.67707 1.42714 0.78350 0.86988 0.92171 0.92204 0.88014 0.88409 0.85128 0.85282 0.85388 0.84950 0.91457 0.87577 0.88928 0.86737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.23 19.25 29.55 0.57 -4.66 16 2 C -0.11 -2.53 10.87 -37.13 -0.40 -2.93 16 3 C 0.23 5.13 4.91 -6.83 -0.03 5.09 16 4 N -0.44 -11.46 2.60 -117.93 -0.31 -11.77 16 5 C -0.31 -8.78 9.33 -14.93 -0.14 -8.92 16 6 H 0.10 3.12 7.38 -52.49 -0.39 2.73 16 7 C 0.03 0.82 4.87 -17.47 -0.08 0.73 16 8 N -0.86 -22.90 9.48 55.50 0.53 -22.38 16 9 Si 0.92 21.05 29.60 -169.99 -5.03 16.02 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 13 C 0.44 11.18 7.63 -10.99 -0.08 11.10 16 14 O -0.56 -16.34 16.08 5.55 0.09 -16.25 16 15 C 0.10 2.01 4.42 -5.19 -0.02 1.98 16 16 N -0.54 -9.97 2.07 -114.51 -0.24 -10.21 16 17 C 0.13 2.12 5.02 -83.52 -0.42 1.70 16 18 C -0.12 -1.63 9.30 -39.46 -0.37 -2.00 16 19 C -0.11 -1.21 10.04 -39.55 -0.40 -1.61 16 20 C -0.12 -1.27 10.04 -39.55 -0.40 -1.67 16 21 C -0.12 -1.52 9.99 -39.48 -0.39 -1.92 16 22 C 0.10 1.55 5.47 -39.07 -0.21 1.33 16 23 O -0.31 -5.43 9.89 -19.48 -0.19 -5.63 16 24 C 0.08 0.97 6.95 37.01 0.26 1.23 16 25 C -0.18 -2.27 5.45 -28.03 -0.15 -2.42 16 26 C 0.53 9.66 6.82 -10.81 -0.07 9.59 16 27 O -0.52 -11.22 16.78 5.54 0.09 -11.12 16 28 H 0.20 3.23 7.80 -54.09 -0.42 2.81 16 29 H 0.11 2.65 6.44 -51.93 -0.33 2.31 16 30 H 0.06 1.13 6.69 -51.92 -0.35 0.78 16 31 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.10 1.92 6.79 -51.93 -0.35 1.57 16 33 H 0.10 1.77 6.29 -51.93 -0.33 1.44 16 34 H 0.13 1.59 7.41 -52.48 -0.39 1.20 16 35 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 36 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.09 0.99 7.52 -51.93 -0.39 0.60 16 41 H 0.11 1.19 8.13 -51.93 -0.42 0.77 16 LS Contribution 351.40 15.07 5.30 5.30 Total: -1.00 -36.46 351.40 -6.74 -43.20 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -4.62 Total: 6.21 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -2.36 Total: 6.63 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: -0.02 Total: -44.36 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.01 Total: -33.01 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.46 -6.74 -43.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798804897.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.350 kcal (2) G-P(sol) polarization free energy of solvation -36.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds