Wall clock time and date at job start Tue Mar 31 2020 15:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47188 * 99.69469 * 3 2 1 5 5 C 1.37100 * 119.99925 * 264.13439 * 4 3 2 6 6 H 1.07997 * 119.99971 * 197.43528 * 5 4 3 7 7 C 1.38950 * 119.99936 * 17.43735 * 5 4 3 8 8 N 1.31413 * 119.99841 * 21.52317 * 7 5 4 9 9 Si 1.86794 * 120.00108 * 201.52358 * 7 5 4 10 10 H 1.48496 * 109.47599 * 89.99908 * 9 7 5 11 11 H 1.48504 * 109.47108 * 210.00043 * 9 7 5 12 12 H 1.48504 * 109.46824 * 329.99895 * 9 7 5 13 13 C 1.34770 * 120.00058 * 84.13972 * 4 3 2 14 14 O 1.21293 * 120.00277 * 180.02562 * 13 4 3 15 15 C 1.50707 * 120.00352 * 359.97438 * 13 4 3 16 16 N 1.46497 * 109.47228 * 180.02562 * 15 13 4 17 17 C 1.40132 * 120.32828 * 90.00761 * 16 15 13 18 18 C 1.38526 * 120.65192 * 48.54413 * 17 16 15 19 19 C 1.38280 * 119.85495 * 180.33032 * 18 17 16 20 20 C 1.38268 * 120.16882 * 0.03743 * 19 18 17 21 21 C 1.38290 * 120.26204 * 359.88181 * 20 19 18 22 22 C 1.38456 * 119.92430 * 0.28572 * 21 20 19 23 23 O 1.35916 * 120.49348 * 180.70949 * 22 21 20 24 24 C 1.42541 * 117.43756 * 104.18869 * 23 22 21 25 25 C 1.52717 * 110.45196 * 43.70177 * 24 23 22 26 26 C 1.35180 * 120.32442 * 269.97630 * 16 15 13 27 27 O 1.21298 * 120.17138 * 3.63814 * 26 16 15 28 28 H 4.40637 * 5.51422 * 180.02562 * 4 1 2 29 29 H 1.08999 * 109.47661 * 339.69002 * 3 2 1 30 30 H 1.09007 * 109.47187 * 219.69004 * 3 2 1 31 31 H 0.96999 * 120.00237 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.46759 * 60.00151 * 15 13 4 33 33 H 1.08998 * 109.46906 * 300.01113 * 15 13 4 34 34 H 1.08004 * 120.07489 * 0.34816 * 18 17 16 35 35 H 1.08001 * 119.91570 * 180.02562 * 19 18 17 36 36 H 1.08000 * 119.87130 * 179.89328 * 20 19 18 37 37 H 1.07991 * 120.04348 * 180.02562 * 21 20 19 38 38 H 1.09004 * 109.30993 * 283.40460 * 24 23 22 39 39 H 1.08996 * 109.31135 * 164.00789 * 24 23 22 40 40 H 1.09000 * 109.36678 * 283.74420 * 25 24 23 41 41 H 1.08992 * 109.37395 * 164.11836 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1342 0.2335 -1.3615 5 6 3.4776 -0.8286 -2.1576 6 1 4.0900 -0.6714 -3.0331 7 6 3.0376 -2.1073 -1.8379 8 7 1.9863 -2.2664 -1.0657 9 14 3.9405 -3.5999 -2.5059 10 1 5.0089 -3.9988 -1.5548 11 1 2.9834 -4.7228 -2.6745 12 1 4.5468 -3.2647 -3.8194 13 6 3.2459 1.4917 -1.8314 14 8 3.6497 1.6844 -2.9588 15 6 2.8680 2.6592 -0.9565 16 7 3.0772 3.9086 -1.6923 17 6 2.0438 4.4569 -2.4638 18 6 0.7697 4.5989 -1.9391 19 6 -0.2394 5.1358 -2.7173 20 6 0.0204 5.5300 -4.0169 21 6 1.2906 5.3925 -4.5461 22 6 2.3056 4.8526 -3.7746 23 8 3.5616 4.7254 -4.2783 24 6 4.5435 5.6603 -3.8382 25 6 4.4425 5.8696 -2.3288 26 6 4.2687 4.5442 -1.6332 27 8 5.1937 4.0501 -1.0236 28 1 -1.0500 0.0002 0.0001 29 1 3.0098 -0.9629 0.3567 30 1 3.0089 0.7917 0.6563 31 1 1.6793 -3.1590 -0.8422 32 1 3.4880 2.6569 -0.0600 33 1 1.8189 2.5760 -0.6729 34 1 0.5649 4.2912 -0.9242 35 1 -1.2330 5.2473 -2.3090 36 1 -0.7717 5.9471 -4.6210 37 1 1.4897 5.7019 -5.5614 38 1 4.3873 6.6126 -4.3452 39 1 5.5361 5.2832 -4.0842 40 1 3.5870 6.5081 -2.1089 41 1 5.3520 6.3503 -1.9688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798804897.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:55 Heat of formation + Delta-G solvation = -8.675299 kcal Electronic energy + Delta-G solvation = -28739.908407 eV Core-core repulsion = 24780.438830 eV Total energy + Delta-G solvation = -3959.469577 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.41594 -40.52470 -39.78877 -38.54708 -37.19644 -36.35581 -34.09641 -33.07608 -33.01984 -31.34918 -31.03687 -28.95072 -28.08594 -26.45773 -25.56626 -23.70744 -22.93002 -21.85063 -20.63495 -19.72386 -18.60700 -18.50175 -18.23591 -18.16784 -17.94151 -17.31674 -16.60214 -16.53946 -16.14706 -15.81970 -15.80713 -15.42510 -15.23155 -14.95369 -14.60728 -14.36502 -14.26278 -13.97840 -13.87880 -13.55938 -13.19701 -13.11657 -12.84129 -12.80389 -12.61798 -12.48919 -12.20031 -12.17105 -11.67662 -11.22127 -11.18015 -10.96000 -10.92173 -10.66975 -10.30110 -9.86412 -9.72394 -9.09533 -8.35330 -5.95830 0.11243 0.29397 1.26533 1.32666 1.38951 1.49976 1.72703 1.86610 2.11735 2.30127 2.35782 2.45703 2.83307 2.99126 3.15921 3.31566 3.74378 3.80061 3.86064 3.90070 3.98490 4.04727 4.12761 4.19222 4.32601 4.43112 4.46059 4.49838 4.60727 4.61708 4.67408 4.84905 4.91702 5.08803 5.32457 5.40503 5.43017 5.48150 5.51889 5.80869 6.00015 6.15501 6.40719 6.54684 6.87042 7.11145 7.12716 7.35850 7.93759 8.62786 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.014190 B = 0.004467 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.751779 B = 6266.987141 C = 6831.659445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.161 4.161 3 C 0.231 3.769 4 N -0.450 5.450 5 C -0.352 4.352 6 H 0.066 0.934 7 C 0.007 3.993 8 N -0.867 5.867 9 Si 0.982 3.018 10 H -0.265 1.265 11 H -0.272 1.272 12 H -0.282 1.282 13 C 0.424 3.576 14 O -0.610 6.610 15 C 0.114 3.886 16 N -0.539 5.539 17 C 0.088 3.912 18 C -0.126 4.126 19 C -0.103 4.103 20 C -0.103 4.103 21 C -0.125 4.125 22 C 0.072 3.928 23 O -0.352 6.352 24 C 0.071 3.929 25 C -0.166 4.166 26 C 0.514 3.486 27 O -0.571 6.571 28 H 0.238 0.762 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.274 0.726 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.140 0.860 35 H 0.166 0.834 36 H 0.168 0.832 37 H 0.150 0.850 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.117 0.883 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.985 18.345 0.783 19.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.162 4.162 3 C 0.109 3.891 4 N -0.169 5.169 5 C -0.479 4.479 6 H 0.084 0.916 7 C -0.197 4.197 8 N -0.504 5.504 9 Si 0.806 3.194 10 H -0.190 1.190 11 H -0.197 1.197 12 H -0.208 1.208 13 C 0.213 3.787 14 O -0.496 6.496 15 C -0.012 4.012 16 N -0.264 5.264 17 C -0.004 4.004 18 C -0.145 4.145 19 C -0.121 4.121 20 C -0.121 4.121 21 C -0.144 4.144 22 C 0.027 3.973 23 O -0.270 6.270 24 C -0.004 4.004 25 C -0.206 4.206 26 C 0.306 3.694 27 O -0.450 6.450 28 H 0.254 0.746 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.125 0.875 33 H 0.136 0.864 34 H 0.158 0.842 35 H 0.183 0.817 36 H 0.185 0.815 37 H 0.168 0.832 38 H 0.129 0.871 39 H 0.116 0.884 40 H 0.135 0.865 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.261 17.852 0.556 18.926 hybrid contribution 0.597 -1.441 -0.182 1.570 sum -5.664 16.411 0.374 17.365 Atomic orbital electron populations 1.25159 0.96213 1.03667 0.99987 1.23293 0.94736 0.97952 1.00260 1.18298 0.85219 1.02356 0.83251 1.43871 1.56205 1.04474 1.12359 1.19458 1.31687 0.86303 1.10452 0.91600 1.25912 0.95422 1.00640 0.97730 1.70157 1.19551 1.24097 1.36572 0.85115 0.78421 0.77393 0.78438 1.18972 1.19674 1.20774 1.21213 0.83964 0.85093 0.88441 1.90534 1.51840 1.85189 1.22019 1.21318 1.03823 0.81741 0.94283 1.45201 1.12369 1.21717 1.47139 1.18530 0.90055 1.01031 0.90759 1.21231 0.91026 1.00829 1.01445 1.21454 0.99540 0.97079 0.94043 1.21496 0.96026 0.98817 0.95762 1.21444 0.92954 0.98946 1.01024 1.19110 0.86481 1.01345 0.90401 1.86036 1.17491 1.55597 1.67837 1.22974 0.91745 0.94446 0.91196 1.22475 1.08053 0.93047 0.97034 1.21499 0.80575 0.87758 0.79595 1.90672 1.39870 1.69395 1.45050 0.74601 0.88786 0.89150 0.91639 0.87474 0.86434 0.84226 0.81698 0.81498 0.83237 0.87116 0.88410 0.86487 0.84523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -8.81 19.25 74.32 1.43 -7.38 16 2 C -0.16 -7.00 10.87 31.12 0.34 -6.66 16 3 C 0.23 10.56 4.91 84.57 0.42 10.98 16 4 N -0.45 -24.46 2.60 -645.42 -1.68 -26.14 16 5 C -0.35 -20.95 9.33 84.04 0.78 -20.17 16 6 H 0.07 4.32 7.38 -2.91 -0.02 4.30 16 7 C 0.01 0.37 4.87 84.93 0.41 0.78 16 8 N -0.87 -45.83 9.48 21.66 0.21 -45.63 16 9 Si 0.98 43.82 29.60 68.60 2.03 45.85 16 10 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 11 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 13 C 0.42 22.80 7.63 87.66 0.67 23.47 16 14 O -0.61 -38.15 16.08 -3.07 -0.05 -38.20 16 15 C 0.11 4.71 4.42 85.64 0.38 5.09 16 16 N -0.54 -20.62 2.07 -634.34 -1.32 -21.93 16 17 C 0.09 2.89 5.02 38.16 0.19 3.08 16 18 C -0.13 -3.17 9.30 22.35 0.21 -2.96 16 19 C -0.10 -1.90 10.04 22.29 0.22 -1.68 16 20 C -0.10 -1.81 10.04 22.29 0.22 -1.59 16 21 C -0.12 -2.92 9.99 22.33 0.22 -2.70 16 22 C 0.07 2.28 5.47 22.60 0.12 2.40 16 23 O -0.35 -12.56 9.89 -92.60 -0.92 -13.47 16 24 C 0.07 1.78 6.95 71.89 0.50 2.28 16 25 C -0.17 -4.16 5.45 29.75 0.16 -4.00 16 26 C 0.51 19.46 6.82 87.59 0.60 20.06 16 27 O -0.57 -25.98 16.78 -3.09 -0.05 -26.03 16 28 H 0.24 6.73 7.80 -4.42 -0.03 6.69 16 29 H 0.09 4.56 6.44 -2.39 -0.02 4.55 16 30 H 0.09 3.45 6.69 -2.38 -0.02 3.44 16 31 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 32 H 0.11 4.21 6.79 -2.39 -0.02 4.20 16 33 H 0.12 4.27 6.29 -2.39 -0.02 4.25 16 34 H 0.14 3.13 7.41 -2.91 -0.02 3.10 16 35 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 36 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 37 H 0.15 2.85 8.06 -2.92 -0.02 2.83 16 38 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.12 2.32 7.52 -2.39 -0.02 2.30 16 41 H 0.14 2.72 8.13 -2.39 -0.02 2.70 16 Total: -1.00 -85.50 351.40 6.17 -79.33 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 1.06 Total: 25.20 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: 6.88 Total: 21.01 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -2.79 Total: -93.70 kcal Atomic # 8 Polarization: -76.68 SS G_CDS: -1.02 Total: -77.70 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -85.50 6.17 -79.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798804897.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.655 kcal (2) G-P(sol) polarization free energy of solvation -85.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds