Wall clock time and date at job start Tue Mar 31 2020 14:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31802 * 119.12003 * 2 1 4 4 C 1.32333 * 120.81821 * 180.02562 * 3 2 1 5 5 C 1.38594 * 119.10270 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.79697 * 179.97438 * 5 4 3 7 7 O 1.45199 * 109.47501 * 90.00041 * 6 5 4 8 8 C 1.34222 * 117.00262 * 180.02562 * 7 6 5 9 9 O 1.20820 * 120.00086 * 359.97438 * 8 7 6 10 10 C 1.50702 * 120.00250 * 179.97438 * 8 7 6 11 11 C 1.50693 * 109.47332 * 179.97438 * 10 8 7 12 12 C 1.38327 * 119.96429 * 269.72149 * 11 10 8 13 13 C 1.38288 * 120.13350 * 179.76640 * 12 11 10 14 14 C 1.38123 * 120.07027 * 0.51375 * 13 12 11 15 15 C 1.38855 * 119.92702 * 359.74350 * 14 13 12 16 16 O 1.35752 * 120.06358 * 179.97438 * 15 14 13 17 17 C 1.34831 * 117.00145 * 354.49228 * 16 15 14 18 18 H 1.07994 * 120.00330 * 5.05011 * 17 16 15 19 19 C 1.38655 * 119.99738 * 185.05766 * 17 16 15 20 20 N 1.31557 * 120.00573 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99723 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47124 * 60.00000 * 21 19 17 23 23 H 1.48497 * 109.47031 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47171 * 299.99679 * 21 19 17 25 25 C 1.38080 * 119.96636 * 90.00100 * 11 10 8 26 26 C 1.38595 * 118.40384 * 359.97438 * 5 4 3 27 27 N 1.31795 * 119.12706 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.46992 * 90.00074 * 1 2 3 29 29 H 1.09000 * 109.46571 * 209.99907 * 1 2 3 30 30 H 1.08994 * 109.46975 * 329.99431 * 1 2 3 31 31 H 1.08001 * 120.44304 * 180.02562 * 4 3 2 32 32 H 1.09003 * 109.46909 * 209.99605 * 6 5 4 33 33 H 1.09003 * 109.47281 * 329.99600 * 6 5 4 34 34 H 1.08997 * 109.47317 * 300.00167 * 10 8 7 35 35 H 1.09002 * 109.46758 * 59.99534 * 10 8 7 36 36 H 1.07997 * 119.93279 * 0.02562 * 12 11 10 37 37 H 1.07996 * 119.96057 * 180.25837 * 13 12 11 38 38 H 1.07995 * 120.02992 * 179.76827 * 14 13 12 39 39 H 0.97001 * 120.00296 * 180.02562 * 20 19 17 40 40 H 1.08001 * 120.03021 * 359.95888 * 25 11 10 41 41 H 1.07995 * 120.45169 * 179.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1484 1.1514 0.0000 4 6 3.4712 1.1906 -0.0005 5 6 4.1809 0.0002 -0.0016 6 6 5.6879 0.0003 -0.0028 7 8 6.1731 -0.0003 1.3658 8 6 7.5038 0.0003 1.5405 9 8 8.2391 0.0007 0.5818 10 6 8.0810 0.0003 2.9326 11 6 9.5858 0.0003 2.8526 12 6 10.2761 -1.1980 2.8217 13 6 11.6567 -1.2021 2.7433 14 6 12.3514 -0.0088 2.7064 15 6 11.6616 1.1957 2.7426 16 8 12.3415 2.3701 2.7069 17 6 13.6872 2.3000 2.7518 18 1 14.1788 1.3386 2.7308 19 6 14.4399 3.4621 2.8250 20 7 13.8412 4.6333 2.8502 21 14 16.3044 3.3648 2.8878 22 1 16.8063 2.6887 1.6646 23 1 16.8693 4.7361 2.9620 24 1 16.7197 2.5924 4.0862 25 6 10.2745 1.1966 2.8159 26 6 3.4713 -1.1903 -0.0015 27 7 2.1485 -1.1513 -0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 3.9906 2.1376 -0.0001 32 1 6.0509 -0.8895 -0.5172 33 1 6.0508 0.8905 -0.5166 34 1 7.7452 0.8900 3.4652 35 1 7.7458 -0.8899 3.4649 36 1 9.7354 -2.1323 2.8546 37 1 12.1926 -2.1393 2.7152 38 1 13.4298 -0.0128 2.6489 39 1 14.3678 5.4463 2.9010 40 1 9.7352 2.1318 2.8439 41 1 3.9908 -2.1371 -0.0028 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000803412169.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:12 Heat of formation + Delta-G solvation = -39.524322 kcal Electronic energy + Delta-G solvation = -25542.340382 eV Core-core repulsion = 21581.533091 eV Total energy + Delta-G solvation = -3960.807291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -41.56260 -40.48203 -39.00618 -37.05976 -36.26089 -34.19426 -34.15398 -32.49192 -32.10780 -30.25235 -29.27468 -27.56329 -25.88396 -25.23186 -25.12246 -22.60905 -21.89474 -21.54867 -20.38770 -18.28199 -17.76416 -17.67159 -17.26221 -17.01269 -16.44013 -16.37794 -15.57516 -15.12361 -14.66432 -14.58240 -14.42584 -14.09494 -13.75719 -13.68243 -13.55687 -13.33159 -13.16844 -12.80155 -12.77277 -12.62127 -12.47911 -11.92435 -11.59858 -11.36920 -11.29835 -11.25132 -10.92183 -10.89341 -10.82836 -10.67492 -10.48695 -10.46218 -9.78914 -9.63638 -9.37038 -8.84600 -8.15066 -7.26178 -6.45020 -4.04371 0.28608 0.65610 1.93442 2.26705 2.33875 2.72557 3.13148 3.14145 3.16879 3.36885 3.50903 3.70102 3.96075 4.14498 4.20135 4.30889 4.52754 4.77834 4.79253 4.94099 4.99895 5.07481 5.10685 5.11336 5.14379 5.24145 5.44977 5.46823 5.49853 5.59577 5.70271 5.88092 5.96107 6.12670 6.28044 6.29110 6.51480 6.61420 6.86627 7.03748 7.18990 7.32721 7.40624 7.63792 7.75958 7.79768 7.99397 9.00379 9.69959 10.72900 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.026169 B = 0.001929 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.726272 B =14515.118150 C =15237.319576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.321 3.679 3 N -0.520 5.520 4 C 0.178 3.822 5 C -0.208 4.208 6 C 0.117 3.883 7 O -0.359 6.359 8 C 0.461 3.539 9 O -0.486 6.486 10 C -0.063 4.063 11 C -0.045 4.045 12 C -0.195 4.195 13 C -0.074 4.074 14 C -0.227 4.227 15 C 0.154 3.846 16 O -0.178 6.178 17 C -0.392 4.392 18 H 0.091 0.909 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.172 4.172 26 C 0.177 3.823 27 N -0.521 5.521 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.173 0.827 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.270 0.730 40 H 0.116 0.884 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.949 -10.612 -3.500 23.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.055 3.945 3 N -0.234 5.234 4 C 0.012 3.988 5 C -0.212 4.212 6 C 0.042 3.958 7 O -0.278 6.278 8 C 0.303 3.697 9 O -0.371 6.371 10 C -0.101 4.101 11 C -0.046 4.046 12 C -0.214 4.214 13 C -0.092 4.092 14 C -0.246 4.246 15 C 0.100 3.900 16 O -0.081 6.081 17 C -0.469 4.469 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.498 5.498 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.191 4.191 26 C 0.011 3.989 27 N -0.235 5.235 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.190 0.810 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.145 0.855 39 H 0.080 0.920 40 H 0.134 0.866 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -21.760 -10.106 -3.834 24.297 hybrid contribution 2.100 -0.087 -0.187 2.110 sum -19.660 -10.193 -4.021 22.508 Atomic orbital electron populations 1.20608 0.85446 1.04426 1.04052 1.23427 0.98467 0.83515 0.89097 1.68371 1.09778 1.30410 1.14870 1.23278 0.89434 0.98412 0.87662 1.21326 0.96779 0.96259 1.06826 1.21509 0.88046 1.04372 0.81847 1.86568 1.25476 1.84899 1.30812 1.23906 0.79716 0.72803 0.93259 1.90736 1.60019 1.43561 1.42734 1.20272 0.93237 1.06106 0.90441 1.18653 0.91387 0.93404 1.01107 1.20372 0.94225 0.95980 1.10852 1.20694 0.93796 0.96904 0.97847 1.21209 1.00712 0.92097 1.10616 1.19264 0.91497 0.86646 0.92594 1.83976 1.20597 1.24691 1.78849 1.21273 0.78088 0.94694 1.52807 0.89120 1.25284 1.00498 0.94186 0.96519 1.70027 1.36348 0.97463 1.45939 0.85782 0.80579 0.77891 0.79180 1.19515 1.20283 1.19491 1.19964 0.91779 0.97158 1.10231 1.23234 0.89456 0.98294 0.87926 1.68355 1.09750 1.30458 1.14987 0.89402 0.89431 0.89394 0.81002 0.89640 0.89511 0.86968 0.87117 0.87730 0.87305 0.85489 0.91974 0.86620 0.81129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.52 10.32 36.01 0.37 -0.15 16 2 C 0.32 3.05 7.64 -157.19 -1.20 1.85 16 3 N -0.52 -5.29 10.33 -10.72 -0.11 -5.40 16 4 C 0.18 1.61 11.01 -17.20 -0.19 1.42 16 5 C -0.21 -1.83 5.55 -104.36 -0.58 -2.41 16 6 C 0.12 1.10 5.64 36.01 0.20 1.30 16 7 O -0.36 -4.11 10.20 -39.24 -0.40 -4.51 16 8 C 0.46 6.38 7.95 36.01 0.29 6.67 16 9 O -0.49 -8.51 15.78 -18.75 -0.30 -8.80 16 10 C -0.06 -0.81 5.94 -29.04 -0.17 -0.98 16 11 C -0.05 -0.79 4.37 -104.65 -0.46 -1.25 16 12 C -0.20 -3.35 9.70 -39.53 -0.38 -3.74 16 13 C -0.07 -1.37 10.04 -39.60 -0.40 -1.77 16 14 C -0.23 -4.97 9.17 -39.39 -0.36 -5.33 16 15 C 0.15 3.74 6.65 -39.11 -0.26 3.48 16 16 O -0.18 -5.09 9.76 0.04 0.00 -5.09 16 17 C -0.39 -10.99 9.49 30.89 0.29 -10.70 16 18 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -25.31 13.67 55.48 0.76 -24.55 16 21 Si 0.94 20.51 29.55 -169.99 -5.02 15.49 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 25 C -0.17 -3.63 9.65 -39.40 -0.38 -4.01 16 26 C 0.18 1.53 11.01 -17.20 -0.19 1.34 16 27 N -0.52 -5.16 10.33 -10.72 -0.11 -5.27 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.09 0.73 8.10 -51.93 -0.42 0.31 16 33 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 34 H 0.11 1.24 8.08 -51.93 -0.42 0.82 16 35 H 0.11 1.09 8.08 -51.93 -0.42 0.67 16 36 H 0.10 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 41 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 366.80 15.07 5.53 5.53 Total: -1.00 -34.75 366.80 -7.94 -42.68 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -4.77 Total: 3.20 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -3.51 Total: -13.28 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.54 Total: -35.22 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.70 Total: -18.41 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.75 -7.94 -42.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803412169.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.160 kcal (2) G-P(sol) polarization free energy of solvation -34.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds