Wall clock time and date at job start Tue Mar 31 2020 16:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34885 * 125.64893 * 2 1 4 4 C 1.35872 * 109.08189 * 179.97438 * 3 2 1 5 5 C 1.39381 * 107.92174 * 359.77195 * 4 3 2 6 6 C 1.37845 * 125.64990 * 179.97438 * 2 1 3 7 7 C 1.41535 * 126.31655 * 359.97438 * 6 2 1 8 8 O 1.21606 * 119.99717 * 359.97438 * 7 6 2 9 9 C 1.49093 * 120.00325 * 179.97438 * 7 6 2 10 10 O 1.21400 * 119.99758 * 0.02562 * 9 7 6 11 11 N 1.34775 * 120.00093 * 179.97438 * 9 7 6 12 12 C 1.46498 * 119.99904 * 179.97438 * 11 9 7 13 13 C 1.50695 * 109.47300 * 179.97438 * 12 11 9 14 14 C 1.38300 * 119.93634 * 269.73138 * 13 12 11 15 15 C 1.38103 * 120.07235 * 179.72038 * 14 13 12 16 16 C 1.38881 * 119.92859 * 0.56979 * 15 14 13 17 17 O 1.35743 * 120.07033 * 179.67702 * 16 15 14 18 18 C 1.34829 * 117.00323 * 174.48588 * 17 16 15 19 19 H 1.08000 * 119.99772 * 5.06302 * 18 17 16 20 20 C 1.38655 * 120.00285 * 185.06067 * 18 17 16 21 21 N 1.31556 * 119.99986 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99817 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47268 * 60.00314 * 22 20 18 24 24 H 1.48504 * 109.46929 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47219 * 300.00047 * 22 20 18 26 26 C 1.38884 * 119.86119 * 359.70391 * 16 15 14 27 27 C 1.38100 * 119.93123 * 0.02562 * 26 16 15 28 28 H 1.08991 * 109.47335 * 270.02523 * 1 2 3 29 29 H 1.09003 * 109.46788 * 30.02798 * 1 2 3 30 30 H 1.09001 * 109.46940 * 150.02309 * 1 2 3 31 31 H 1.07998 * 125.45667 * 359.94478 * 3 2 1 32 32 H 1.07998 * 126.03545 * 179.97438 * 4 3 2 33 33 H 1.07997 * 126.53897 * 180.22839 * 5 4 3 34 34 H 0.96993 * 120.00031 * 0.02562 * 11 9 7 35 35 H 1.08999 * 109.47244 * 60.00112 * 12 11 9 36 36 H 1.09004 * 109.47345 * 300.00174 * 12 11 9 37 37 H 1.08004 * 119.96372 * 359.97187 * 14 13 12 38 38 H 1.07998 * 120.03412 * 180.26808 * 15 14 13 39 39 H 0.97002 * 119.99992 * 180.02562 * 21 20 18 40 40 H 1.07996 * 120.03050 * 179.97438 * 26 16 15 41 41 H 1.08003 * 119.96708 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.0961 0.0000 4 6 3.5535 0.7087 0.0006 5 6 3.5864 -0.6847 0.0062 6 6 2.2684 -1.1201 0.0005 7 6 1.8303 -2.4659 0.0016 8 8 0.6406 -2.7180 0.0027 9 6 2.8272 -3.5746 0.0015 10 8 4.0148 -3.3229 0.0008 11 7 2.4099 -4.8561 0.0030 12 6 3.3895 -5.9454 0.0023 13 6 2.6690 -7.2689 0.0050 14 6 2.3462 -7.8766 1.2047 15 6 1.6809 -9.0867 1.2105 16 6 1.3463 -9.6993 0.0099 17 8 0.6981 -10.8920 0.0122 18 6 0.3022 -11.3759 -1.1823 19 1 0.5757 -10.8606 -2.0912 20 6 -0.4561 -12.5351 -1.2440 21 7 -0.7896 -13.1625 -0.1368 22 14 -1.0040 -13.2058 -2.8991 23 1 0.1891 -13.5131 -3.7282 24 1 -1.7957 -14.4453 -2.6933 25 1 -1.8404 -12.1928 -3.5914 26 6 1.6769 -9.0893 -1.1933 27 6 2.3373 -7.8765 -1.1924 28 1 -0.3633 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 1.9014 2.1179 -0.0008 32 1 4.4115 1.3646 0.0003 33 1 4.4691 -1.3070 0.0115 34 1 1.4610 -5.0571 0.0039 35 1 4.0159 -5.8713 0.8913 36 1 4.0132 -5.8726 -0.8887 37 1 2.6112 -7.4022 2.1381 38 1 1.4253 -9.5586 2.1478 39 1 -1.3198 -13.9737 -0.1800 40 1 1.4185 -9.5635 -2.1286 41 1 2.5943 -7.4014 -2.1277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806772495.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:41 Heat of formation + Delta-G solvation = -11.450045 kcal Electronic energy + Delta-G solvation = -25853.281578 eV Core-core repulsion = 21893.691679 eV Total energy + Delta-G solvation = -3959.589899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.89452 -40.09348 -39.14443 -38.32910 -36.91157 -34.59559 -33.25465 -32.38970 -30.36113 -30.29869 -30.03588 -26.87736 -26.50317 -25.42398 -24.24385 -22.08131 -21.66776 -20.77625 -20.68641 -19.55220 -18.10820 -17.88793 -17.28323 -16.99368 -16.22414 -16.07602 -15.39484 -14.96379 -14.84353 -14.71308 -14.52827 -14.08509 -13.89062 -13.82856 -13.69863 -13.63068 -13.37563 -12.81142 -12.75381 -12.64834 -12.55450 -12.39486 -12.13259 -11.70648 -11.47135 -11.37496 -10.97289 -10.83325 -10.73291 -10.51368 -9.61541 -9.45147 -9.14777 -9.05716 -8.91879 -8.58612 -8.30483 -7.35365 -6.54141 -4.13053 0.37023 1.94663 1.95215 2.11606 2.34911 2.57116 3.04483 3.08579 3.12123 3.12790 3.28723 3.89556 4.21590 4.44032 4.51949 4.60198 4.75854 4.83696 5.00117 5.07610 5.11805 5.14688 5.19152 5.28983 5.35954 5.62631 5.75489 5.80168 5.87328 5.88702 6.10328 6.30737 6.32255 6.37275 6.57434 6.64272 6.78025 6.83319 6.89306 6.95598 7.11683 7.24189 7.33342 7.43223 7.69400 7.90326 7.94320 8.90931 9.58664 10.63146 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.023541 B = 0.002038 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.128383 B =13733.420944 C =14239.598850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.410 5.410 3 C 0.038 3.962 4 C -0.226 4.226 5 C -0.076 4.076 6 C -0.105 4.105 7 C 0.414 3.586 8 O -0.453 6.453 9 C 0.489 3.511 10 O -0.515 6.515 11 N -0.692 5.692 12 C 0.177 3.823 13 C -0.219 4.219 14 C -0.052 4.052 15 C -0.195 4.195 16 C 0.162 3.838 17 O -0.172 6.172 18 C -0.394 4.394 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.237 4.237 27 C -0.049 4.049 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.171 0.829 32 H 0.146 0.854 33 H 0.170 0.830 34 H 0.412 0.588 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.272 0.728 40 H 0.129 0.871 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.554 25.111 -0.414 25.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.082 5.082 3 C -0.100 4.100 4 C -0.250 4.250 5 C -0.102 4.102 6 C -0.213 4.213 7 C 0.293 3.707 8 O -0.330 6.330 9 C 0.271 3.729 10 O -0.392 6.392 11 N -0.345 5.345 12 C 0.055 3.945 13 C -0.221 4.221 14 C -0.071 4.071 15 C -0.215 4.215 16 C 0.107 3.893 17 O -0.074 6.074 18 C -0.470 4.470 19 H 0.111 0.889 20 C -0.165 4.165 21 N -0.493 5.493 22 Si 0.767 3.233 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.256 4.256 27 C -0.068 4.068 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.121 0.879 31 H 0.188 0.812 32 H 0.164 0.836 33 H 0.187 0.813 34 H 0.248 0.752 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.131 0.869 38 H 0.137 0.863 39 H 0.082 0.918 40 H 0.146 0.854 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.160 24.673 -0.161 25.021 hybrid contribution -0.786 -0.353 -0.858 1.216 sum 3.374 24.320 -1.019 24.574 Atomic orbital electron populations 1.22352 0.75993 1.05420 1.04187 1.43912 1.06904 1.05257 1.52167 1.22201 0.91079 0.91703 1.05061 1.21069 0.95971 0.95608 1.12308 1.22332 0.95696 0.95051 0.97139 1.19310 0.91333 0.87800 1.22894 1.20167 0.88730 0.88289 0.73521 1.90627 1.18485 1.86866 1.37051 1.20265 0.89314 0.84368 0.78964 1.90675 1.16665 1.83604 1.48295 1.46322 1.12176 1.04752 1.71229 1.20136 0.89632 0.82362 1.02361 1.19156 1.11250 0.97843 0.93830 1.20535 0.95965 0.94080 0.96544 1.20216 1.07460 0.97428 0.96353 1.19448 0.90664 0.85905 0.93325 1.83975 1.62494 1.27742 1.33205 1.21315 1.33544 1.09072 0.83068 0.88936 1.25327 0.95952 0.95767 0.99418 1.70026 1.34692 1.17454 1.27090 0.85757 0.79051 0.78548 0.79967 1.19404 1.20200 1.19413 1.21157 1.07678 0.98302 0.98508 1.20647 0.95459 0.94226 0.96421 0.90277 0.89631 0.87932 0.81161 0.83620 0.81316 0.75219 0.90855 0.90897 0.86882 0.86308 0.91797 0.85363 0.87320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.42 10.53 59.85 0.63 1.05 16 2 N -0.41 -3.87 3.15 -121.68 -0.38 -4.25 16 3 C 0.04 0.29 11.35 -17.06 -0.19 0.10 16 4 C -0.23 -1.95 10.81 -40.00 -0.43 -2.38 16 5 C -0.08 -0.84 9.95 -38.95 -0.39 -1.23 16 6 C -0.10 -1.24 6.72 -83.69 -0.56 -1.80 16 7 C 0.41 5.29 7.00 -33.82 -0.24 5.06 16 8 O -0.45 -6.12 14.64 5.27 0.08 -6.04 16 9 C 0.49 6.58 7.85 -11.75 -0.09 6.48 16 10 O -0.52 -7.61 14.04 5.45 0.08 -7.54 16 11 N -0.69 -9.07 5.54 -62.03 -0.34 -9.41 16 12 C 0.18 2.38 5.80 -5.20 -0.03 2.35 16 13 C -0.22 -3.48 5.25 -104.58 -0.55 -4.03 16 14 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 15 C -0.20 -3.93 9.99 -39.39 -0.39 -4.32 16 16 C 0.16 3.75 6.65 -39.10 -0.26 3.49 16 17 O -0.17 -4.76 9.76 0.07 0.00 -4.76 16 18 C -0.39 -10.70 9.49 30.89 0.29 -10.41 16 19 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 20 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -24.63 13.67 55.48 0.76 -23.87 16 22 Si 0.94 20.02 29.55 -169.99 -5.02 15.00 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 26 C -0.24 -4.90 9.17 -39.39 -0.36 -5.26 16 27 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.10 0.87 6.26 -51.93 -0.33 0.54 16 31 H 0.17 0.65 8.06 -52.49 -0.42 0.23 16 32 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.17 1.96 6.07 -52.49 -0.32 1.64 16 34 H 0.41 5.34 7.93 -40.82 -0.32 5.02 16 35 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 36 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 37 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 38 H 0.12 2.32 8.06 -52.49 -0.42 1.89 16 39 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.13 2.66 5.64 -52.49 -0.30 2.37 16 41 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 359.25 15.07 5.41 5.41 Total: -1.00 -31.70 359.25 -7.33 -39.03 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -4.47 Total: 8.82 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -3.44 Total: -12.40 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.03 Total: -37.53 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: 0.15 Total: -18.34 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.70 -7.33 -39.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806772495.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.584 kcal (2) G-P(sol) polarization free energy of solvation -31.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds