Wall clock time and date at job start Tue Mar 31 2020 16:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34885 * 125.64893 * 2 1 4 4 C 1.35872 * 109.08189 * 179.97438 * 3 2 1 5 5 C 1.39381 * 107.92174 * 359.77195 * 4 3 2 6 6 C 1.37845 * 125.64990 * 179.97438 * 2 1 3 7 7 C 1.41535 * 126.31655 * 359.97438 * 6 2 1 8 8 O 1.21606 * 119.99717 * 359.97438 * 7 6 2 9 9 C 1.49093 * 120.00325 * 179.97438 * 7 6 2 10 10 O 1.21400 * 119.99758 * 0.02562 * 9 7 6 11 11 N 1.34775 * 120.00093 * 179.97438 * 9 7 6 12 12 C 1.46498 * 119.99904 * 179.97438 * 11 9 7 13 13 C 1.50695 * 109.47300 * 179.97438 * 12 11 9 14 14 C 1.38300 * 119.93634 * 269.73138 * 13 12 11 15 15 C 1.38103 * 120.07235 * 179.72038 * 14 13 12 16 16 C 1.38881 * 119.92859 * 0.56979 * 15 14 13 17 17 O 1.35743 * 120.07033 * 179.67702 * 16 15 14 18 18 C 1.34829 * 117.00323 * 174.48588 * 17 16 15 19 19 H 1.08000 * 119.99772 * 5.06302 * 18 17 16 20 20 C 1.38655 * 120.00285 * 185.06067 * 18 17 16 21 21 N 1.31556 * 119.99986 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99817 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47268 * 60.00314 * 22 20 18 24 24 H 1.48504 * 109.46929 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47219 * 300.00047 * 22 20 18 26 26 C 1.38884 * 119.86119 * 359.70391 * 16 15 14 27 27 C 1.38100 * 119.93123 * 0.02562 * 26 16 15 28 28 H 1.08991 * 109.47335 * 270.02523 * 1 2 3 29 29 H 1.09003 * 109.46788 * 30.02798 * 1 2 3 30 30 H 1.09001 * 109.46940 * 150.02309 * 1 2 3 31 31 H 1.07998 * 125.45667 * 359.94478 * 3 2 1 32 32 H 1.07998 * 126.03545 * 179.97438 * 4 3 2 33 33 H 1.07997 * 126.53897 * 180.22839 * 5 4 3 34 34 H 0.96993 * 120.00031 * 0.02562 * 11 9 7 35 35 H 1.08999 * 109.47244 * 60.00112 * 12 11 9 36 36 H 1.09004 * 109.47345 * 300.00174 * 12 11 9 37 37 H 1.08004 * 119.96372 * 359.97187 * 14 13 12 38 38 H 1.07998 * 120.03412 * 180.26808 * 15 14 13 39 39 H 0.97002 * 119.99992 * 180.02562 * 21 20 18 40 40 H 1.07996 * 120.03050 * 179.97438 * 26 16 15 41 41 H 1.08003 * 119.96708 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.0961 0.0000 4 6 3.5535 0.7087 0.0006 5 6 3.5864 -0.6847 0.0062 6 6 2.2684 -1.1201 0.0005 7 6 1.8303 -2.4659 0.0016 8 8 0.6406 -2.7180 0.0027 9 6 2.8272 -3.5746 0.0015 10 8 4.0148 -3.3229 0.0008 11 7 2.4099 -4.8561 0.0030 12 6 3.3895 -5.9454 0.0023 13 6 2.6690 -7.2689 0.0050 14 6 2.3462 -7.8766 1.2047 15 6 1.6809 -9.0867 1.2105 16 6 1.3463 -9.6993 0.0099 17 8 0.6981 -10.8920 0.0122 18 6 0.3022 -11.3759 -1.1823 19 1 0.5757 -10.8606 -2.0912 20 6 -0.4561 -12.5351 -1.2440 21 7 -0.7896 -13.1625 -0.1368 22 14 -1.0040 -13.2058 -2.8991 23 1 0.1891 -13.5131 -3.7282 24 1 -1.7957 -14.4453 -2.6933 25 1 -1.8404 -12.1928 -3.5914 26 6 1.6769 -9.0893 -1.1933 27 6 2.3373 -7.8765 -1.1924 28 1 -0.3633 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 1.9014 2.1179 -0.0008 32 1 4.4115 1.3646 0.0003 33 1 4.4691 -1.3070 0.0115 34 1 1.4610 -5.0571 0.0039 35 1 4.0159 -5.8713 0.8913 36 1 4.0132 -5.8726 -0.8887 37 1 2.6112 -7.4022 2.1381 38 1 1.4253 -9.5586 2.1478 39 1 -1.3198 -13.9737 -0.1800 40 1 1.4185 -9.5635 -2.1286 41 1 2.5943 -7.4014 -2.1277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806772495.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:39 Heat of formation + Delta-G solvation = -31.674029 kcal Electronic energy + Delta-G solvation = -25854.158556 eV Core-core repulsion = 21893.691679 eV Total energy + Delta-G solvation = -3960.466877 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -42.65226 -41.15830 -40.70326 -39.36344 -38.50760 -35.83570 -34.29536 -33.89820 -31.87306 -31.53979 -31.06311 -27.94163 -27.46410 -27.01849 -25.38517 -23.67156 -22.65567 -22.09429 -21.56321 -20.42803 -19.88390 -18.99121 -18.60095 -18.17150 -17.13279 -17.06217 -16.53194 -16.40977 -16.04223 -16.00734 -15.71768 -15.54483 -15.34105 -15.01221 -14.76947 -14.63838 -14.40736 -14.19205 -14.17338 -13.66591 -13.30759 -13.27927 -13.22298 -13.04020 -12.98329 -12.55773 -12.40690 -12.38786 -12.26358 -12.15664 -11.22440 -10.84403 -10.60412 -10.24817 -9.83120 -9.75121 -9.30743 -9.03784 -8.49356 -6.17789 -0.52963 0.48803 0.56050 1.10559 1.34899 1.43502 1.50821 1.53232 1.84329 2.15791 2.17344 2.35443 2.79860 3.11245 3.32605 3.46801 3.82312 3.89392 3.95005 4.00666 4.11519 4.15274 4.34845 4.42311 4.42772 4.54177 4.57297 4.68209 4.70443 4.78128 5.01714 5.05680 5.12498 5.24364 5.25129 5.29205 5.49322 5.62061 5.67187 5.71558 5.86334 5.99901 6.02918 6.14162 6.24624 6.39358 6.88267 6.95109 7.73925 8.73099 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.023541 B = 0.002038 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.128383 B =13733.420944 C =14239.598850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.414 5.414 3 C 0.061 3.939 4 C -0.236 4.236 5 C -0.087 4.087 6 C -0.141 4.141 7 C 0.414 3.586 8 O -0.471 6.471 9 C 0.492 3.508 10 O -0.529 6.529 11 N -0.690 5.690 12 C 0.181 3.819 13 C -0.187 4.187 14 C -0.043 4.043 15 C -0.206 4.206 16 C 0.123 3.877 17 O -0.228 6.228 18 C -0.415 4.415 19 H 0.104 0.896 20 C -0.022 4.022 21 N -0.918 5.918 22 Si 1.018 2.982 23 H -0.257 1.257 24 H -0.272 1.272 25 H -0.258 1.258 26 C -0.245 4.245 27 C -0.045 4.045 28 H 0.085 0.915 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.216 0.784 32 H 0.169 0.831 33 H 0.157 0.843 34 H 0.413 0.587 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.149 0.851 38 H 0.116 0.884 39 H 0.273 0.727 40 H 0.121 0.879 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.514 29.250 -1.425 29.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.086 5.086 3 C -0.078 4.078 4 C -0.259 4.259 5 C -0.114 4.114 6 C -0.249 4.249 7 C 0.295 3.705 8 O -0.351 6.351 9 C 0.274 3.726 10 O -0.407 6.407 11 N -0.343 5.343 12 C 0.059 3.941 13 C -0.189 4.189 14 C -0.061 4.061 15 C -0.225 4.225 16 C 0.072 3.928 17 O -0.134 6.134 18 C -0.491 4.491 19 H 0.121 0.879 20 C -0.220 4.220 21 N -0.556 5.556 22 Si 0.837 3.163 23 H -0.181 1.181 24 H -0.197 1.197 25 H -0.182 1.182 26 C -0.264 4.264 27 C -0.063 4.063 28 H 0.104 0.896 29 H 0.138 0.862 30 H 0.101 0.899 31 H 0.232 0.768 32 H 0.186 0.814 33 H 0.175 0.825 34 H 0.250 0.750 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.167 0.833 38 H 0.134 0.866 39 H 0.082 0.918 40 H 0.139 0.861 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.156 28.863 -1.171 29.344 hybrid contribution -0.846 -1.162 -0.439 1.503 sum 4.310 27.701 -1.610 28.081 Atomic orbital electron populations 1.22504 0.74702 1.06173 1.04850 1.44173 1.07844 1.05026 1.51595 1.22966 0.90472 0.92928 1.01483 1.21420 0.97545 0.94709 1.12208 1.22389 0.95178 0.96443 0.97352 1.19277 0.92168 0.88088 1.25400 1.20079 0.88284 0.88674 0.73463 1.90621 1.18752 1.87016 1.38689 1.20430 0.89304 0.84482 0.78389 1.90673 1.17272 1.83826 1.48918 1.46180 1.12115 1.04676 1.71327 1.20123 0.89421 0.80775 1.03739 1.19491 1.08176 0.98202 0.92995 1.20912 0.94162 0.92494 0.98561 1.20461 1.07971 0.98619 0.95455 1.20011 0.91565 0.85824 0.95404 1.83946 1.65453 1.30308 1.33688 1.21798 1.33971 1.09677 0.83639 0.87906 1.26600 0.95837 0.95860 1.03703 1.70174 1.37009 1.18568 1.29814 0.84653 0.78942 0.77907 0.74776 1.18102 1.19693 1.18184 1.21257 1.08242 0.99520 0.97397 1.20975 0.94081 0.92811 0.98464 0.89642 0.86180 0.89897 0.76781 0.81384 0.82515 0.75044 0.89507 0.89740 0.83329 0.86615 0.91771 0.86090 0.84129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.65 10.53 127.77 1.35 2.00 16 2 N -0.41 -6.74 3.15 -538.89 -1.70 -8.44 16 3 C 0.06 0.69 11.35 83.67 0.95 1.64 16 4 C -0.24 -3.38 10.81 22.00 0.24 -3.14 16 5 C -0.09 -1.80 9.95 22.68 0.23 -1.58 16 6 C -0.14 -3.15 6.72 39.15 0.26 -2.89 16 7 C 0.41 10.24 7.00 26.00 0.18 10.43 16 8 O -0.47 -12.47 14.64 -4.05 -0.06 -12.53 16 9 C 0.49 12.50 7.85 87.16 0.68 13.18 16 10 O -0.53 -14.86 14.04 -3.40 -0.05 -14.90 16 11 N -0.69 -16.51 5.54 -468.50 -2.60 -19.11 16 12 C 0.18 4.27 5.80 85.63 0.50 4.77 16 13 C -0.19 -5.44 5.25 -19.83 -0.10 -5.54 16 14 C -0.04 -1.35 9.69 22.25 0.22 -1.13 16 15 C -0.21 -8.39 9.99 22.39 0.22 -8.16 16 16 C 0.12 5.94 6.65 22.58 0.15 6.09 16 17 O -0.23 -13.46 9.76 -22.66 -0.22 -13.69 16 18 C -0.41 -23.75 9.49 67.92 0.64 -23.10 16 19 H 0.10 5.36 5.20 -2.91 -0.02 5.35 16 20 C -0.02 -1.24 5.49 84.83 0.47 -0.77 16 21 N -0.92 -55.77 13.67 21.61 0.30 -55.48 16 22 Si 1.02 42.27 29.55 68.60 2.03 44.30 16 23 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 25 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 26 C -0.24 -10.21 9.17 22.39 0.21 -10.00 16 27 C -0.04 -1.45 9.69 22.25 0.22 -1.24 16 28 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.08 1.31 6.26 -2.39 -0.01 1.29 16 31 H 0.22 0.37 8.06 -2.91 -0.02 0.35 16 32 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 33 H 0.16 3.55 6.07 -2.91 -0.02 3.53 16 34 H 0.41 9.90 7.93 -92.71 -0.73 9.17 16 35 H 0.09 1.92 8.08 -2.39 -0.02 1.90 16 36 H 0.08 1.90 8.08 -2.38 -0.02 1.88 16 37 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 38 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 39 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 40 H 0.12 5.15 5.64 -2.91 -0.02 5.13 16 41 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -74.74 359.25 4.46 -70.28 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: 0.36 Total: 29.03 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 6.40 Total: -19.46 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -4.00 Total: -83.03 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -0.33 Total: -41.12 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -74.74 4.46 -70.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806772495.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.610 kcal (2) G-P(sol) polarization free energy of solvation -74.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds