Wall clock time and date at job start Tue Mar 31 2020 15:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50697 * 119.99803 * 2 1 4 4 N 1.46501 * 109.47518 * 125.00019 * 3 2 1 5 5 C 1.34775 * 120.00510 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99847 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.00071 * 179.97438 * 5 4 3 8 8 H 1.08999 * 109.47069 * 299.99564 * 7 5 4 9 9 C 1.47204 * 109.47374 * 59.99741 * 7 5 4 10 10 N 5.61750 * 155.51187 * 78.63252 * 2 1 3 11 11 C 1.50706 * 109.47138 * 179.97438 * 7 5 4 12 12 O 1.20763 * 119.99771 * 334.99680 * 11 7 5 13 13 C 1.50697 * 120.00001 * 155.00093 * 11 7 5 14 14 C 1.50699 * 109.46970 * 180.02562 * 13 11 7 15 15 C 1.38328 * 119.96224 * 270.02075 * 14 13 11 16 16 C 1.38279 * 120.13490 * 179.97438 * 15 14 13 17 17 C 1.38120 * 120.07187 * 359.77180 * 16 15 14 18 18 C 1.38861 * 119.92847 * 0.50048 * 17 16 15 19 19 O 1.35751 * 120.06597 * 179.74703 * 18 17 16 20 20 C 1.34829 * 117.00376 * 354.17384 * 19 18 17 21 21 H 1.07998 * 119.99999 * 5.03596 * 20 19 18 22 22 C 1.38657 * 120.00083 * 185.03464 * 20 19 18 23 23 N 1.31555 * 119.99797 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99748 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47410 * 90.00109 * 24 22 20 26 26 H 1.48504 * 109.46801 * 209.99865 * 24 22 20 27 27 H 1.48497 * 109.47495 * 329.99577 * 24 22 20 28 28 C 1.38073 * 119.96952 * 89.99515 * 14 13 11 29 29 H 1.07999 * 119.99704 * 359.97438 * 1 2 3 30 30 H 1.07995 * 119.99577 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.99784 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47550 * 4.99463 * 3 2 1 33 33 H 1.08999 * 109.46775 * 244.99645 * 3 2 1 34 34 H 0.97006 * 119.99510 * 359.97438 * 4 3 2 35 35 H 1.08996 * 109.47386 * 59.99775 * 13 11 7 36 36 H 1.08997 * 109.47038 * 299.99611 * 13 11 7 37 37 H 1.08001 * 119.93314 * 359.97438 * 15 14 13 38 38 H 1.07999 * 119.96467 * 180.02562 * 16 15 14 39 39 H 1.08001 * 120.03711 * 180.27572 * 17 16 15 40 40 H 0.96998 * 119.99749 * 179.97438 * 23 22 20 41 41 H 1.08001 * 120.03594 * 0.04940 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 3.7790 2.4087 1.3329 6 8 3.7158 3.3552 0.5772 7 6 4.7355 2.4365 2.4970 8 1 4.1773 2.3398 3.4282 9 6 5.6871 1.3199 2.3771 10 7 6.4223 0.4589 2.2828 11 6 5.4900 3.7411 2.4962 12 8 5.6355 4.3539 1.4658 13 6 6.0629 4.2810 3.7812 14 6 6.7628 5.5876 3.5093 15 6 8.1055 5.5960 3.1767 16 6 8.7511 6.7928 2.9260 17 6 8.0556 7.9836 3.0023 18 6 6.7090 7.9790 3.3415 19 8 6.0240 9.1482 3.4224 20 6 6.7347 10.2852 3.2807 21 1 7.7843 10.2383 3.0308 22 6 6.1180 11.5146 3.4560 23 7 6.8116 12.6239 3.3182 24 14 4.3027 11.5956 3.8890 25 1 4.1451 11.5853 5.3655 26 1 3.7175 12.8441 3.3375 27 1 3.6023 10.4221 3.3082 28 6 6.0631 6.7751 3.5919 29 1 -0.5399 0.9353 0.0004 30 1 -0.5399 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1317 0.0895 33 1 2.6213 1.4025 -0.9314 34 1 3.0446 0.5748 1.7356 35 1 6.7755 3.5650 4.1905 36 1 5.2580 4.4428 4.4982 37 1 8.6506 4.6658 3.1128 38 1 9.7994 6.7961 2.6661 39 1 8.5593 8.9177 2.8020 40 1 6.3801 13.4840 3.4404 41 1 5.0149 6.7680 3.8520 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810530501.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:53 Heat of formation + Delta-G solvation = -12.719518 kcal Electronic energy + Delta-G solvation = -26025.576332 eV Core-core repulsion = 22065.931384 eV Total energy + Delta-G solvation = -3959.644947 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 4.37 seconds Orbital eigenvalues (eV) -41.00944 -39.43728 -38.71533 -37.06713 -36.64820 -36.18679 -33.47016 -32.61871 -32.32818 -31.57743 -29.44966 -27.52413 -26.36086 -25.14765 -22.11779 -21.64850 -21.29157 -20.73948 -20.18674 -18.82010 -17.77776 -17.48072 -17.10878 -16.95131 -15.98547 -15.86054 -15.27717 -15.16094 -14.96400 -14.48667 -14.40816 -14.34716 -13.84945 -13.71695 -13.68962 -13.53115 -13.26137 -13.19018 -12.89525 -12.56804 -12.55199 -12.42647 -12.15671 -11.74708 -11.69101 -11.33168 -10.87270 -10.81080 -10.71069 -10.62242 -10.19123 -10.14035 -9.72368 -9.50480 -9.37144 -8.84795 -8.16264 -7.35765 -6.38414 -4.05163 1.46926 1.56308 1.83431 1.95517 2.19108 2.28533 2.30980 2.76179 3.24564 3.27520 3.35590 3.43574 3.66409 4.07494 4.25533 4.26745 4.43795 4.50513 4.55112 4.67760 4.93285 5.04856 5.10778 5.17497 5.26763 5.30360 5.35676 5.54313 5.67939 5.79805 5.82942 5.98331 6.12148 6.12778 6.24955 6.52483 6.78781 6.82690 6.90181 7.08169 7.19729 7.30342 7.32460 7.60910 7.68882 7.82883 8.06601 8.96919 9.59295 10.69310 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013987 B = 0.002658 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.334874 B =10531.285207 C =12092.181305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.180 4.180 3 C 0.146 3.854 4 N -0.726 5.726 5 C 0.523 3.477 6 O -0.481 6.481 7 C -0.062 4.062 8 H 0.167 0.833 9 C 0.212 3.788 10 N -0.387 5.387 11 C 0.359 3.641 12 O -0.367 6.367 13 C -0.115 4.115 14 C -0.047 4.047 15 C -0.191 4.191 16 C -0.075 4.075 17 C -0.215 4.215 18 C 0.160 3.840 19 O -0.217 6.217 20 C -0.388 4.388 21 H 0.106 0.894 22 C 0.063 3.937 23 N -0.880 5.880 24 Si 0.905 3.095 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.259 1.259 28 C -0.174 4.174 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.402 0.598 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.133 0.867 40 H 0.279 0.721 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.105 -26.202 0.490 28.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.198 4.198 3 C 0.024 3.976 4 N -0.380 5.380 5 C 0.304 3.696 6 O -0.352 6.352 7 C -0.088 4.088 8 H 0.184 0.816 9 C -0.107 4.107 10 N -0.064 5.064 11 C 0.224 3.776 12 O -0.231 6.231 13 C -0.152 4.152 14 C -0.048 4.048 15 C -0.210 4.210 16 C -0.093 4.093 17 C -0.235 4.235 18 C 0.108 3.892 19 O -0.123 6.123 20 C -0.464 4.464 21 H 0.123 0.877 22 C -0.140 4.140 23 N -0.518 5.518 24 Si 0.731 3.269 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.183 1.183 28 C -0.193 4.193 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.133 0.867 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.236 0.764 35 H 0.125 0.875 36 H 0.130 0.870 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.151 0.849 40 H 0.089 0.911 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.208 -26.098 -0.801 27.687 hybrid contribution -0.889 0.035 0.552 1.047 sum -10.097 -26.063 -0.249 27.952 Atomic orbital electron populations 1.24024 0.95740 1.02614 0.97553 1.22980 0.96261 0.97978 1.02577 1.20480 0.91720 0.95923 0.89526 1.45935 1.41185 1.19556 1.31297 1.19519 0.81163 0.83441 0.85507 1.90931 1.65829 1.34266 1.44152 1.19664 0.94006 0.91945 1.03138 0.81625 1.27637 0.94548 0.93794 0.94704 1.81306 1.07932 1.10158 1.06969 1.23838 0.78289 0.83685 0.91742 1.90603 1.43268 1.54968 1.34236 1.21012 1.01640 0.96611 0.95920 1.18725 0.93664 0.91939 1.00441 1.20442 0.94258 0.97294 1.08965 1.20746 0.98719 0.92153 0.97730 1.21319 0.94914 0.99057 1.08176 1.19019 0.90519 0.86501 0.93143 1.83567 1.36519 1.12003 1.80173 1.20762 0.95990 0.80813 1.48845 0.87651 1.24463 1.00026 0.93584 0.95963 1.69647 1.36987 0.97570 1.47634 0.86184 0.83528 0.78132 0.79099 1.19910 1.20820 1.18281 1.19960 0.99689 0.89851 1.09814 0.87946 0.87792 0.86668 0.90401 0.90254 0.76361 0.87540 0.87017 0.87722 0.87134 0.84937 0.91094 0.86552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.66 14.32 29.01 0.42 -0.24 16 2 C -0.18 -0.83 9.63 -36.03 -0.35 -1.18 16 3 C 0.15 0.98 6.11 -5.19 -0.03 0.95 16 4 N -0.73 -4.81 5.44 -61.47 -0.33 -5.14 16 5 C 0.52 5.18 7.08 -10.99 -0.08 5.10 16 6 O -0.48 -7.31 14.52 -18.21 -0.26 -7.57 16 7 C -0.06 -0.47 2.84 -95.71 -0.27 -0.74 16 8 H 0.17 0.34 8.14 -51.93 -0.42 -0.08 16 9 C 0.21 1.83 14.39 -20.76 -0.30 1.54 16 10 N -0.39 -4.20 18.54 42.15 0.78 -3.42 16 11 C 0.36 4.23 6.13 -29.03 -0.18 4.05 16 12 O -0.37 -6.33 14.36 -17.77 -0.26 -6.59 16 13 C -0.11 -1.21 5.76 -29.04 -0.17 -1.37 16 14 C -0.05 -0.78 4.37 -104.65 -0.46 -1.23 16 15 C -0.19 -3.22 9.70 -39.53 -0.38 -3.60 16 16 C -0.08 -1.40 10.04 -39.61 -0.40 -1.80 16 17 C -0.22 -4.75 9.17 -39.39 -0.36 -5.11 16 18 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 19 O -0.22 -5.81 8.59 0.05 0.00 -5.81 16 20 C -0.39 -11.08 9.95 30.89 0.31 -10.77 16 21 H 0.11 3.07 5.44 -52.49 -0.29 2.78 16 22 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 23 N -0.88 -25.66 13.96 55.48 0.77 -24.88 16 24 Si 0.91 21.84 28.62 -169.99 -4.86 16.97 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.26 -6.29 7.11 56.52 0.40 -5.89 16 28 C -0.17 -3.42 9.64 -39.40 -0.38 -3.80 16 29 H 0.10 0.41 7.84 -52.49 -0.41 -0.01 16 30 H 0.10 0.30 8.06 -52.49 -0.42 -0.12 16 31 H 0.12 0.43 8.06 -52.49 -0.42 0.01 16 32 H 0.08 0.57 7.79 -51.93 -0.40 0.16 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.40 1.51 8.33 -40.82 -0.34 1.17 16 35 H 0.11 0.84 8.09 -51.93 -0.42 0.42 16 36 H 0.11 0.83 8.08 -51.93 -0.42 0.41 16 37 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.13 3.06 5.64 -52.49 -0.30 2.76 16 40 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 372.72 15.07 5.62 5.62 Total: -1.00 -36.77 372.72 -6.20 -42.98 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -4.67 Total: 0.87 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -2.99 Total: -13.03 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 1.22 Total: -33.44 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.52 Total: -19.97 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.86 Total: 16.97 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.77 -6.20 -42.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810530501.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.256 kcal (2) G-P(sol) polarization free energy of solvation -36.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.38 seconds