Wall clock time and date at job start Tue Mar 31 2020 15:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50697 * 119.99803 * 2 1 4 4 N 1.46501 * 109.47518 * 125.00019 * 3 2 1 5 5 C 1.34775 * 120.00510 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99847 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.00071 * 179.97438 * 5 4 3 8 8 H 1.08999 * 109.47069 * 299.99564 * 7 5 4 9 9 C 1.47204 * 109.47374 * 59.99741 * 7 5 4 10 10 N 5.61750 * 155.51187 * 78.63252 * 2 1 3 11 11 C 1.50706 * 109.47138 * 179.97438 * 7 5 4 12 12 O 1.20763 * 119.99771 * 334.99680 * 11 7 5 13 13 C 1.50697 * 120.00001 * 155.00093 * 11 7 5 14 14 C 1.50699 * 109.46970 * 180.02562 * 13 11 7 15 15 C 1.38328 * 119.96224 * 270.02075 * 14 13 11 16 16 C 1.38279 * 120.13490 * 179.97438 * 15 14 13 17 17 C 1.38120 * 120.07187 * 359.77180 * 16 15 14 18 18 C 1.38861 * 119.92847 * 0.50048 * 17 16 15 19 19 O 1.35751 * 120.06597 * 179.74703 * 18 17 16 20 20 C 1.34829 * 117.00376 * 354.17384 * 19 18 17 21 21 H 1.07998 * 119.99999 * 5.03596 * 20 19 18 22 22 C 1.38657 * 120.00083 * 185.03464 * 20 19 18 23 23 N 1.31555 * 119.99797 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99748 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47410 * 90.00109 * 24 22 20 26 26 H 1.48504 * 109.46801 * 209.99865 * 24 22 20 27 27 H 1.48497 * 109.47495 * 329.99577 * 24 22 20 28 28 C 1.38073 * 119.96952 * 89.99515 * 14 13 11 29 29 H 1.07999 * 119.99704 * 359.97438 * 1 2 3 30 30 H 1.07995 * 119.99577 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.99784 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47550 * 4.99463 * 3 2 1 33 33 H 1.08999 * 109.46775 * 244.99645 * 3 2 1 34 34 H 0.97006 * 119.99510 * 359.97438 * 4 3 2 35 35 H 1.08996 * 109.47386 * 59.99775 * 13 11 7 36 36 H 1.08997 * 109.47038 * 299.99611 * 13 11 7 37 37 H 1.08001 * 119.93314 * 359.97438 * 15 14 13 38 38 H 1.07999 * 119.96467 * 180.02562 * 16 15 14 39 39 H 1.08001 * 120.03711 * 180.27572 * 17 16 15 40 40 H 0.96998 * 119.99749 * 179.97438 * 23 22 20 41 41 H 1.08001 * 120.03594 * 0.04940 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 3.7790 2.4087 1.3329 6 8 3.7158 3.3552 0.5772 7 6 4.7355 2.4365 2.4970 8 1 4.1773 2.3398 3.4282 9 6 5.6871 1.3199 2.3771 10 7 6.4223 0.4589 2.2828 11 6 5.4900 3.7411 2.4962 12 8 5.6355 4.3539 1.4658 13 6 6.0629 4.2810 3.7812 14 6 6.7628 5.5876 3.5093 15 6 8.1055 5.5960 3.1767 16 6 8.7511 6.7928 2.9260 17 6 8.0556 7.9836 3.0023 18 6 6.7090 7.9790 3.3415 19 8 6.0240 9.1482 3.4224 20 6 6.7347 10.2852 3.2807 21 1 7.7843 10.2383 3.0308 22 6 6.1180 11.5146 3.4560 23 7 6.8116 12.6239 3.3182 24 14 4.3027 11.5956 3.8890 25 1 4.1451 11.5853 5.3655 26 1 3.7175 12.8441 3.3375 27 1 3.6023 10.4221 3.3082 28 6 6.0631 6.7751 3.5919 29 1 -0.5399 0.9353 0.0004 30 1 -0.5399 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1317 0.0895 33 1 2.6213 1.4025 -0.9314 34 1 3.0446 0.5748 1.7356 35 1 6.7755 3.5650 4.1905 36 1 5.2580 4.4428 4.4982 37 1 8.6506 4.6658 3.1128 38 1 9.7994 6.7961 2.6661 39 1 8.5593 8.9177 2.8020 40 1 6.3801 13.4840 3.4404 41 1 5.0149 6.7680 3.8520 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810530501.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:49 Heat of formation + Delta-G solvation = -37.548610 kcal Electronic energy + Delta-G solvation = -26026.653002 eV Core-core repulsion = 22065.931384 eV Total energy + Delta-G solvation = -3960.721617 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.87459 -40.87992 -39.88656 -38.26685 -37.80330 -36.81522 -34.47545 -34.11609 -33.61853 -32.47281 -31.05271 -28.68182 -27.25824 -26.90725 -23.50626 -22.94818 -22.19195 -21.40780 -21.18310 -19.65616 -19.51331 -18.87330 -18.01449 -17.83211 -16.86702 -16.78708 -16.61685 -16.42335 -15.98834 -15.87902 -15.60858 -15.36705 -15.10702 -15.05342 -14.84109 -14.40265 -14.19672 -14.16161 -14.12336 -13.92666 -13.77818 -13.46106 -13.25160 -13.02773 -12.78580 -12.52515 -12.41041 -12.33574 -12.05310 -11.91461 -11.40525 -11.30576 -10.91009 -10.77246 -10.53859 -10.11851 -9.64795 -9.06050 -8.49108 -6.22040 0.48046 0.70272 0.71563 1.04485 1.20159 1.31664 1.36390 1.46582 1.53385 1.58930 2.14776 2.29466 2.67576 2.71232 2.91759 3.06322 3.19966 3.49911 3.76907 3.85232 4.05200 4.09431 4.16202 4.32164 4.34451 4.48342 4.55345 4.57590 4.69967 4.75853 4.76612 5.00491 5.00989 5.22400 5.27128 5.40269 5.64877 5.65660 5.72775 5.77081 5.77709 5.92684 6.17093 6.26467 6.33681 6.47561 6.85075 7.05791 7.59694 8.62706 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013987 B = 0.002658 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.334874 B =10531.285207 C =12092.181305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.183 4.183 3 C 0.144 3.856 4 N -0.707 5.707 5 C 0.519 3.481 6 O -0.542 6.542 7 C -0.046 4.046 8 H 0.234 0.766 9 C 0.237 3.763 10 N -0.422 5.422 11 C 0.365 3.635 12 O -0.432 6.432 13 C -0.115 4.115 14 C -0.038 4.038 15 C -0.176 4.176 16 C -0.081 4.081 17 C -0.242 4.242 18 C 0.117 3.883 19 O -0.245 6.245 20 C -0.399 4.399 21 H 0.078 0.922 22 C 0.007 3.993 23 N -0.925 5.925 24 Si 0.973 3.027 25 H -0.260 1.260 26 H -0.268 1.268 27 H -0.264 1.264 28 C -0.177 4.177 29 H 0.100 0.900 30 H 0.120 0.880 31 H 0.128 0.872 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.419 0.581 35 H 0.150 0.850 36 H 0.156 0.844 37 H 0.146 0.854 38 H 0.136 0.864 39 H 0.104 0.896 40 H 0.284 0.716 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.843 -30.708 2.446 33.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.201 4.201 3 C 0.021 3.979 4 N -0.361 5.361 5 C 0.301 3.699 6 O -0.417 6.417 7 C -0.070 4.070 8 H 0.250 0.750 9 C -0.082 4.082 10 N -0.098 5.098 11 C 0.234 3.766 12 O -0.300 6.300 13 C -0.151 4.151 14 C -0.038 4.038 15 C -0.194 4.194 16 C -0.099 4.099 17 C -0.261 4.261 18 C 0.068 3.932 19 O -0.153 6.153 20 C -0.476 4.476 21 H 0.095 0.905 22 C -0.191 4.191 23 N -0.566 5.566 24 Si 0.795 3.205 25 H -0.185 1.185 26 H -0.193 1.193 27 H -0.189 1.189 28 C -0.196 4.196 29 H 0.119 0.881 30 H 0.138 0.862 31 H 0.146 0.854 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.257 0.743 35 H 0.167 0.833 36 H 0.173 0.827 37 H 0.163 0.837 38 H 0.154 0.846 39 H 0.122 0.878 40 H 0.094 0.906 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.935 -30.712 1.193 32.622 hybrid contribution -0.237 1.080 -0.106 1.111 sum -11.172 -29.631 1.087 31.686 Atomic orbital electron populations 1.24193 0.95621 1.03329 0.96206 1.22896 0.96343 0.97178 1.03719 1.20470 0.91527 0.97063 0.88870 1.45849 1.39934 1.19187 1.31118 1.19926 0.81382 0.83123 0.85460 1.90929 1.67832 1.36619 1.46359 1.19675 0.93162 0.89128 1.05081 0.74982 1.27571 0.93828 0.93239 0.93514 1.81363 1.08835 1.11366 1.08248 1.24332 0.76891 0.84362 0.90970 1.90628 1.45823 1.57169 1.36426 1.21279 1.03620 0.93888 0.96328 1.19375 0.93655 0.93595 0.97204 1.21043 0.94830 0.97917 1.05598 1.21093 1.00018 0.91619 0.97177 1.21321 0.95144 0.99577 1.10036 1.19662 0.91559 0.86818 0.95152 1.83503 1.36727 1.12229 1.82809 1.20692 0.95285 0.82326 1.49272 0.90489 1.25324 1.04696 0.93017 0.96043 1.69737 1.38921 0.98194 1.49726 0.85182 0.77739 0.78151 0.79429 1.18466 1.19326 1.18875 1.20370 1.00664 0.89501 1.09106 0.88140 0.86215 0.85391 0.91259 0.92030 0.74318 0.83255 0.82651 0.83669 0.84645 0.87798 0.90596 0.85006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 14.32 67.77 0.97 0.05 16 2 C -0.18 -1.30 9.63 25.64 0.25 -1.05 16 3 C 0.14 1.78 6.11 85.63 0.52 2.30 16 4 N -0.71 -7.56 5.44 -466.80 -2.54 -10.10 16 5 C 0.52 9.03 7.08 87.66 0.62 9.65 16 6 O -0.54 -16.31 14.52 19.69 0.29 -16.03 16 7 C -0.05 -0.47 2.84 -14.09 -0.04 -0.51 16 8 H 0.23 -0.81 8.14 -2.39 -0.02 -0.83 16 9 C 0.24 3.06 14.39 89.44 1.29 4.35 16 10 N -0.42 -7.62 18.54 20.01 0.37 -7.25 16 11 C 0.36 7.12 6.13 29.10 0.18 7.30 16 12 O -0.43 -14.26 14.36 21.26 0.31 -13.96 16 13 C -0.11 -1.73 5.76 29.10 0.17 -1.57 16 14 C -0.04 -1.11 4.37 -19.88 -0.09 -1.20 16 15 C -0.18 -5.34 9.70 22.30 0.22 -5.12 16 16 C -0.08 -2.96 10.04 22.25 0.22 -2.74 16 17 C -0.24 -11.23 9.17 22.39 0.21 -11.02 16 18 C 0.12 5.68 6.65 22.58 0.15 5.83 16 19 O -0.24 -13.77 8.59 -22.74 -0.20 -13.96 16 20 C -0.40 -24.37 9.95 67.92 0.68 -23.69 16 21 H 0.08 4.95 5.44 -2.91 -0.02 4.94 16 22 C 0.01 0.43 5.49 84.83 0.47 0.89 16 23 N -0.92 -56.62 13.96 21.61 0.30 -56.32 16 24 Si 0.97 46.40 28.62 68.60 1.96 48.36 16 25 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 28 C -0.18 -6.78 9.64 22.39 0.22 -6.56 16 29 H 0.10 0.63 7.84 -2.91 -0.02 0.61 16 30 H 0.12 0.35 8.06 -2.91 -0.02 0.33 16 31 H 0.13 0.60 8.06 -2.91 -0.02 0.57 16 32 H 0.07 0.98 7.79 -2.39 -0.02 0.97 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.42 1.56 8.33 -92.70 -0.77 0.79 16 35 H 0.15 1.15 8.09 -2.39 -0.02 1.13 16 36 H 0.16 1.15 8.08 -2.39 -0.02 1.13 16 37 H 0.15 3.31 8.06 -2.91 -0.02 3.28 16 38 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 39 H 0.10 5.33 5.64 -2.91 -0.02 5.31 16 40 H 0.28 15.93 8.31 -92.71 -0.77 15.16 16 41 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -90.42 372.72 6.82 -83.60 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 0.31 Total: 8.74 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: 6.02 Total: -23.09 kcal Atomic # 7 Polarization: -71.80 SS G_CDS: -1.87 Total: -73.67 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: 0.40 Total: -43.95 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.96 Total: 48.36 kcal Total: -90.42 6.82 -83.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810530501.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.051 kcal (2) G-P(sol) polarization free energy of solvation -90.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds