Wall clock time and date at job start Tue Mar 31 2020 15:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00109 * 2 1 4 4 N 1.46503 * 109.46803 * 125.00223 * 3 2 1 5 5 C 1.34782 * 119.99684 * 179.72732 * 4 3 2 6 6 O 1.21277 * 120.00246 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.99757 * 180.02562 * 5 4 3 8 8 H 1.08997 * 109.47374 * 60.00065 * 7 5 4 9 9 C 1.47203 * 109.46881 * 299.99675 * 7 5 4 10 10 N 5.62008 * 111.87603 * 64.90171 * 2 1 3 11 11 C 1.50700 * 109.46776 * 180.02562 * 7 5 4 12 12 O 1.20760 * 120.00531 * 29.99480 * 11 7 5 13 13 C 1.50703 * 119.99757 * 209.99881 * 11 7 5 14 14 C 1.50691 * 109.47269 * 179.97438 * 13 11 7 15 15 C 1.38321 * 119.96941 * 269.72254 * 14 13 11 16 16 C 1.38280 * 120.14418 * 179.76522 * 15 14 13 17 17 C 1.38120 * 120.06404 * 0.51207 * 16 15 14 18 18 C 1.38861 * 119.93470 * 359.74354 * 17 16 15 19 19 O 1.35749 * 120.07098 * 179.97438 * 18 17 16 20 20 C 1.34824 * 116.99920 * 354.48043 * 19 18 17 21 21 H 1.08003 * 120.00494 * 5.06487 * 20 19 18 22 22 C 1.38657 * 119.99877 * 185.05640 * 20 19 18 23 23 N 1.31557 * 119.99922 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00043 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47096 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46935 * 120.00435 * 24 22 20 27 27 H 1.48495 * 109.47398 * 240.00628 * 24 22 20 28 28 C 1.38084 * 119.96561 * 90.00036 * 14 13 11 29 29 H 1.08003 * 119.99991 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.00187 * 359.97438 * 1 2 3 31 31 H 1.08004 * 120.00187 * 180.02562 * 2 1 3 32 32 H 1.08996 * 109.46912 * 5.00421 * 3 2 1 33 33 H 1.09001 * 109.47095 * 245.00088 * 3 2 1 34 34 H 0.97002 * 120.00400 * 359.97438 * 4 3 2 35 35 H 1.09007 * 109.46793 * 300.00043 * 13 11 7 36 36 H 1.08999 * 109.47012 * 59.99612 * 13 11 7 37 37 H 1.08004 * 119.92912 * 0.02562 * 15 14 13 38 38 H 1.07995 * 119.97097 * 180.25753 * 16 15 14 39 39 H 1.08004 * 120.03420 * 179.76553 * 17 16 15 40 40 H 0.97005 * 119.99834 * 179.97438 * 23 22 20 41 41 H 1.07999 * 120.03152 * 359.95308 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3317 1.1314 5 6 3.7826 2.4064 1.3300 6 8 3.7227 3.3511 0.5718 7 6 4.7400 2.4336 2.4935 8 1 5.4419 1.6043 2.4061 9 6 3.9866 2.3082 3.7519 10 7 3.4040 2.2122 4.7230 11 6 5.4978 3.7362 2.4901 12 8 4.9821 4.7337 2.0457 13 6 6.8993 3.7941 3.0411 14 6 7.4288 5.1997 2.9205 15 6 8.1140 5.5848 1.7823 16 6 8.5973 6.8751 1.6658 17 6 8.4062 7.7807 2.6910 18 6 7.7233 7.3959 3.8372 19 8 7.5344 8.2836 4.8467 20 6 8.1318 9.4860 4.7243 21 1 8.6601 9.7367 3.8162 22 6 8.0679 10.4010 5.7642 23 7 7.4248 10.0956 6.8704 24 14 8.8951 12.0673 5.5943 25 1 9.5462 12.1633 4.2631 26 1 7.8775 13.1407 5.7257 27 1 9.9188 12.2226 6.6588 28 6 7.2345 6.1005 3.9489 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 3.0446 0.5746 1.7356 35 1 6.8898 3.4977 4.0901 36 1 7.5395 3.1154 2.4776 37 1 8.2683 4.8772 0.9810 38 1 9.1282 7.1739 0.7741 39 1 8.7871 8.7874 2.6011 40 1 7.3804 10.7356 7.5981 41 1 6.7027 5.7982 4.8390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810530503.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:58 Heat of formation + Delta-G solvation = -15.172496 kcal Electronic energy + Delta-G solvation = -25939.146523 eV Core-core repulsion = 21979.395207 eV Total energy + Delta-G solvation = -3959.751316 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -40.95389 -39.33706 -38.59022 -36.93672 -36.48085 -36.16055 -33.43885 -32.57178 -32.19772 -31.48873 -29.19801 -27.43696 -26.33325 -25.21266 -22.01698 -21.54049 -21.34358 -20.74480 -20.20235 -18.74431 -17.77079 -17.36955 -17.03460 -16.83835 -16.06205 -15.56067 -15.28523 -15.07554 -14.81536 -14.64251 -14.32555 -14.05176 -14.01348 -13.73674 -13.56579 -13.48937 -13.22674 -13.02028 -12.86059 -12.60096 -12.42623 -12.37605 -11.84965 -11.68111 -11.53806 -11.27399 -10.85818 -10.76106 -10.60876 -10.58351 -10.40600 -10.17415 -9.66511 -9.50891 -9.30492 -8.80997 -8.06529 -7.19929 -6.40961 -3.99994 1.48974 1.63300 1.89932 2.05170 2.29897 2.38706 2.41672 2.81325 3.15208 3.16391 3.22172 3.44788 3.74287 3.99757 4.11779 4.27369 4.47127 4.56252 4.60336 4.84440 5.05669 5.10931 5.14630 5.25683 5.30506 5.36032 5.48694 5.66492 5.76931 5.81756 5.94832 5.99479 6.14362 6.19408 6.35313 6.67855 6.90947 6.93060 6.96488 7.09876 7.25922 7.36739 7.40260 7.46712 7.70301 7.84124 8.04000 9.04790 9.75389 10.77273 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.021346 B = 0.002244 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.410343 B =12472.061742 C =12856.639752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.180 4.180 3 C 0.146 3.854 4 N -0.726 5.726 5 C 0.525 3.475 6 O -0.486 6.486 7 C -0.060 4.060 8 H 0.165 0.835 9 C 0.208 3.792 10 N -0.382 5.382 11 C 0.361 3.639 12 O -0.370 6.370 13 C -0.114 4.114 14 C -0.045 4.045 15 C -0.196 4.196 16 C -0.074 4.074 17 C -0.229 4.229 18 C 0.154 3.846 19 O -0.179 6.179 20 C -0.390 4.390 21 H 0.092 0.908 22 C 0.038 3.962 23 N -0.863 5.863 24 Si 0.941 3.059 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.276 1.276 28 C -0.177 4.177 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.403 0.597 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.127 0.873 40 H 0.269 0.731 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.602 -22.972 -12.579 26.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.198 4.198 3 C 0.024 3.976 4 N -0.379 5.379 5 C 0.307 3.693 6 O -0.357 6.357 7 C -0.086 4.086 8 H 0.182 0.818 9 C -0.111 4.111 10 N -0.058 5.058 11 C 0.226 3.774 12 O -0.234 6.234 13 C -0.151 4.151 14 C -0.045 4.045 15 C -0.215 4.215 16 C -0.092 4.092 17 C -0.248 4.248 18 C 0.101 3.899 19 O -0.083 6.083 20 C -0.467 4.467 21 H 0.110 0.890 22 C -0.166 4.166 23 N -0.499 5.499 24 Si 0.766 3.234 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.202 1.202 28 C -0.196 4.196 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.135 0.865 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.237 0.763 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.144 0.856 40 H 0.079 0.921 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.010 -21.698 -11.517 25.545 hybrid contribution 0.658 0.309 -0.154 0.744 sum -6.351 -21.389 -11.671 25.180 Atomic orbital electron populations 1.24033 0.95844 1.02609 0.97497 1.22978 0.96254 0.97977 1.02621 1.20476 0.91763 0.95902 0.89480 1.45932 1.40828 1.19887 1.31276 1.19518 0.81152 0.83064 0.85609 1.90903 1.65720 1.33779 1.45266 1.19661 0.97252 1.05195 0.86476 0.81757 1.27635 0.94740 0.94978 0.93792 1.81339 1.07567 1.06938 1.09995 1.23842 0.89226 0.86697 0.77616 1.90585 1.68041 1.34966 1.29779 1.21016 0.93204 0.97370 1.03559 1.18730 0.98419 0.92826 0.94565 1.20372 1.06212 0.96911 0.97999 1.20697 0.98019 0.93201 0.97297 1.21199 1.07249 1.01075 0.95280 1.19284 0.92495 0.89716 0.88446 1.83977 1.63295 1.22968 1.38031 1.21371 1.33336 0.89036 1.02931 0.89018 1.25292 0.97209 0.99636 0.94479 1.70054 1.39270 1.35753 1.04775 0.85645 0.78726 0.80349 0.78688 1.19093 1.20189 1.20174 1.19974 1.07637 0.91794 1.00228 0.87758 0.88044 0.86504 0.90698 0.90035 0.76297 0.87444 0.87148 0.87657 0.87375 0.85570 0.92130 0.86829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.73 14.32 29.02 0.42 -0.32 16 2 C -0.18 -0.83 9.63 -36.03 -0.35 -1.17 16 3 C 0.15 0.98 6.11 -5.19 -0.03 0.94 16 4 N -0.73 -4.92 5.44 -61.47 -0.33 -5.25 16 5 C 0.53 5.31 7.07 -10.98 -0.08 5.23 16 6 O -0.49 -7.31 14.65 -17.82 -0.26 -7.57 16 7 C -0.06 -0.50 2.85 -95.71 -0.27 -0.77 16 8 H 0.17 0.38 8.12 -51.93 -0.42 -0.04 16 9 C 0.21 2.13 14.39 -20.74 -0.30 1.83 16 10 N -0.38 -4.91 18.54 42.17 0.78 -4.12 16 11 C 0.36 4.56 6.04 -29.03 -0.18 4.39 16 12 O -0.37 -6.72 14.56 -17.38 -0.25 -6.97 16 13 C -0.11 -1.31 5.75 -29.04 -0.17 -1.48 16 14 C -0.05 -0.78 4.37 -104.65 -0.46 -1.24 16 15 C -0.20 -3.38 9.70 -39.54 -0.38 -3.76 16 16 C -0.07 -1.39 10.04 -39.61 -0.40 -1.79 16 17 C -0.23 -5.13 9.17 -39.39 -0.36 -5.49 16 18 C 0.15 3.84 6.65 -39.10 -0.26 3.58 16 19 O -0.18 -5.25 9.76 0.07 0.00 -5.25 16 20 C -0.39 -11.17 9.49 30.89 0.29 -10.88 16 21 H 0.09 2.43 5.20 -52.48 -0.27 2.16 16 22 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 23 N -0.86 -25.87 13.67 55.48 0.76 -25.11 16 24 Si 0.94 20.98 29.55 -169.99 -5.02 15.96 16 25 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 28 C -0.18 -3.81 9.65 -39.39 -0.38 -4.19 16 29 H 0.10 0.34 8.06 -52.48 -0.42 -0.08 16 30 H 0.10 0.48 7.84 -52.48 -0.41 0.07 16 31 H 0.12 0.36 8.06 -52.48 -0.42 -0.06 16 32 H 0.07 0.61 7.79 -51.93 -0.40 0.20 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.40 1.63 8.34 -40.82 -0.34 1.29 16 35 H 0.11 1.04 8.09 -51.92 -0.42 0.62 16 36 H 0.11 0.81 8.08 -51.93 -0.42 0.39 16 37 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 38 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 39 H 0.13 2.83 5.64 -52.48 -0.30 2.53 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 374.06 15.07 5.64 5.64 Total: -1.00 -38.47 374.06 -6.35 -44.82 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -4.66 Total: 2.01 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -3.00 Total: -14.15 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 1.21 Total: -34.49 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.51 Total: -19.79 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.47 -6.35 -44.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810530503.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.650 kcal (2) G-P(sol) polarization free energy of solvation -38.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds