Wall clock time and date at job start Tue Mar 31 2020 15:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00109 * 2 1 4 4 N 1.46503 * 109.46803 * 125.00223 * 3 2 1 5 5 C 1.34782 * 119.99684 * 179.72732 * 4 3 2 6 6 O 1.21277 * 120.00246 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.99757 * 180.02562 * 5 4 3 8 8 H 1.08997 * 109.47374 * 60.00065 * 7 5 4 9 9 C 1.47203 * 109.46881 * 299.99675 * 7 5 4 10 10 N 5.62008 * 111.87603 * 64.90171 * 2 1 3 11 11 C 1.50700 * 109.46776 * 180.02562 * 7 5 4 12 12 O 1.20760 * 120.00531 * 29.99480 * 11 7 5 13 13 C 1.50703 * 119.99757 * 209.99881 * 11 7 5 14 14 C 1.50691 * 109.47269 * 179.97438 * 13 11 7 15 15 C 1.38321 * 119.96941 * 269.72254 * 14 13 11 16 16 C 1.38280 * 120.14418 * 179.76522 * 15 14 13 17 17 C 1.38120 * 120.06404 * 0.51207 * 16 15 14 18 18 C 1.38861 * 119.93470 * 359.74354 * 17 16 15 19 19 O 1.35749 * 120.07098 * 179.97438 * 18 17 16 20 20 C 1.34824 * 116.99920 * 354.48043 * 19 18 17 21 21 H 1.08003 * 120.00494 * 5.06487 * 20 19 18 22 22 C 1.38657 * 119.99877 * 185.05640 * 20 19 18 23 23 N 1.31557 * 119.99922 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00043 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47096 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46935 * 120.00435 * 24 22 20 27 27 H 1.48495 * 109.47398 * 240.00628 * 24 22 20 28 28 C 1.38084 * 119.96561 * 90.00036 * 14 13 11 29 29 H 1.08003 * 119.99991 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.00187 * 359.97438 * 1 2 3 31 31 H 1.08004 * 120.00187 * 180.02562 * 2 1 3 32 32 H 1.08996 * 109.46912 * 5.00421 * 3 2 1 33 33 H 1.09001 * 109.47095 * 245.00088 * 3 2 1 34 34 H 0.97002 * 120.00400 * 359.97438 * 4 3 2 35 35 H 1.09007 * 109.46793 * 300.00043 * 13 11 7 36 36 H 1.08999 * 109.47012 * 59.99612 * 13 11 7 37 37 H 1.08004 * 119.92912 * 0.02562 * 15 14 13 38 38 H 1.07995 * 119.97097 * 180.25753 * 16 15 14 39 39 H 1.08004 * 120.03420 * 179.76553 * 17 16 15 40 40 H 0.97005 * 119.99834 * 179.97438 * 23 22 20 41 41 H 1.07999 * 120.03152 * 359.95308 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3317 1.1314 5 6 3.7826 2.4064 1.3300 6 8 3.7227 3.3511 0.5718 7 6 4.7400 2.4336 2.4935 8 1 5.4419 1.6043 2.4061 9 6 3.9866 2.3082 3.7519 10 7 3.4040 2.2122 4.7230 11 6 5.4978 3.7362 2.4901 12 8 4.9821 4.7337 2.0457 13 6 6.8993 3.7941 3.0411 14 6 7.4288 5.1997 2.9205 15 6 8.1140 5.5848 1.7823 16 6 8.5973 6.8751 1.6658 17 6 8.4062 7.7807 2.6910 18 6 7.7233 7.3959 3.8372 19 8 7.5344 8.2836 4.8467 20 6 8.1318 9.4860 4.7243 21 1 8.6601 9.7367 3.8162 22 6 8.0679 10.4010 5.7642 23 7 7.4248 10.0956 6.8704 24 14 8.8951 12.0673 5.5943 25 1 9.5462 12.1633 4.2631 26 1 7.8775 13.1407 5.7257 27 1 9.9188 12.2226 6.6588 28 6 7.2345 6.1005 3.9489 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 3.0446 0.5746 1.7356 35 1 6.8898 3.4977 4.0901 36 1 7.5395 3.1154 2.4776 37 1 8.2683 4.8772 0.9810 38 1 9.1282 7.1739 0.7741 39 1 8.7871 8.7874 2.6011 40 1 7.3804 10.7356 7.5981 41 1 6.7027 5.7982 4.8390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810530503.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:57 Heat of formation + Delta-G solvation = -42.122979 kcal Electronic energy + Delta-G solvation = -25940.315184 eV Core-core repulsion = 21979.395207 eV Total energy + Delta-G solvation = -3960.919977 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -41.87035 -40.78189 -39.86540 -38.17290 -37.82182 -36.81210 -34.36324 -34.10314 -33.57398 -32.47031 -30.85696 -28.66172 -27.34625 -26.91261 -23.40643 -23.04360 -22.23048 -21.47725 -21.21225 -19.58409 -19.38425 -18.82134 -18.06855 -17.81175 -16.84320 -16.75703 -16.49713 -16.29455 -16.09217 -15.87446 -15.63599 -15.41740 -15.25168 -14.93614 -14.77176 -14.35213 -14.25829 -14.18802 -13.96188 -13.82172 -13.59274 -13.55315 -13.19527 -12.98678 -12.74216 -12.50308 -12.35043 -12.20131 -12.08134 -12.05617 -11.38338 -11.20578 -10.87096 -10.78885 -10.52008 -10.11935 -9.61926 -8.96439 -8.48153 -6.16580 0.51563 0.68288 0.77628 1.00993 1.21687 1.32766 1.41410 1.45216 1.51743 1.57568 2.14433 2.16689 2.67725 2.74707 2.94738 3.20844 3.45939 3.50208 3.82292 3.85391 4.03486 4.13066 4.17517 4.33804 4.36822 4.50322 4.57008 4.61731 4.74755 4.75766 4.77961 4.99324 5.10171 5.13778 5.22701 5.33155 5.64542 5.66796 5.74160 5.77148 5.77495 6.02542 6.15207 6.27189 6.33120 6.46170 6.96644 7.04407 7.79069 8.75695 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.021346 B = 0.002244 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.410343 B =12472.061742 C =12856.639752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.177 4.177 3 C 0.143 3.857 4 N -0.707 5.707 5 C 0.523 3.477 6 O -0.541 6.541 7 C -0.045 4.045 8 H 0.240 0.760 9 C 0.232 3.768 10 N -0.429 5.429 11 C 0.366 3.634 12 O -0.436 6.436 13 C -0.116 4.116 14 C -0.036 4.036 15 C -0.176 4.176 16 C -0.075 4.075 17 C -0.247 4.247 18 C 0.108 3.892 19 O -0.237 6.237 20 C -0.412 4.412 21 H 0.101 0.899 22 C -0.027 4.027 23 N -0.923 5.923 24 Si 1.021 2.979 25 H -0.251 1.251 26 H -0.270 1.270 27 H -0.265 1.265 28 C -0.197 4.197 29 H 0.120 0.880 30 H 0.092 0.908 31 H 0.140 0.860 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.419 0.581 35 H 0.131 0.869 36 H 0.173 0.827 37 H 0.157 0.843 38 H 0.145 0.855 39 H 0.115 0.885 40 H 0.272 0.728 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.098 -26.605 -15.038 30.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.195 4.195 3 C 0.020 3.980 4 N -0.360 5.360 5 C 0.306 3.694 6 O -0.417 6.417 7 C -0.069 4.069 8 H 0.256 0.744 9 C -0.086 4.086 10 N -0.106 5.106 11 C 0.236 3.764 12 O -0.304 6.304 13 C -0.152 4.152 14 C -0.036 4.036 15 C -0.194 4.194 16 C -0.093 4.093 17 C -0.266 4.266 18 C 0.058 3.942 19 O -0.144 6.144 20 C -0.488 4.488 21 H 0.118 0.882 22 C -0.224 4.224 23 N -0.562 5.562 24 Si 0.840 3.160 25 H -0.174 1.174 26 H -0.195 1.195 27 H -0.190 1.190 28 C -0.217 4.217 29 H 0.139 0.861 30 H 0.110 0.890 31 H 0.158 0.842 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.257 0.743 35 H 0.149 0.851 36 H 0.191 0.809 37 H 0.175 0.825 38 H 0.163 0.837 39 H 0.132 0.868 40 H 0.081 0.919 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.507 -25.441 -13.994 29.553 hybrid contribution 0.137 1.110 0.371 1.179 sum -5.370 -24.330 -13.622 28.397 Atomic orbital electron populations 1.24189 0.96086 1.03034 0.97200 1.22985 0.96135 0.97594 1.02775 1.20497 0.91520 0.96544 0.89395 1.45839 1.39453 1.19534 1.31196 1.19794 0.81366 0.82813 0.85465 1.90900 1.67459 1.35838 1.47458 1.19764 0.97497 1.05278 0.84409 0.74416 1.27842 0.93752 0.93528 0.93511 1.81387 1.08973 1.08607 1.11615 1.24352 0.89563 0.87187 0.75318 1.90605 1.69508 1.37433 1.32875 1.21298 0.93300 0.94381 1.06219 1.19373 0.96387 0.95091 0.92780 1.21076 1.02939 0.96890 0.98531 1.21177 0.97577 0.93365 0.97217 1.21305 1.07801 1.01632 0.95898 1.19941 0.94696 0.90700 0.88882 1.83934 1.65871 1.24041 1.40556 1.21860 1.33691 0.89612 1.03665 0.88217 1.26636 0.97850 1.04072 0.93807 1.70203 1.42120 1.37728 1.06117 0.84505 0.77723 0.74301 0.79497 1.17440 1.19505 1.19022 1.20292 1.08016 0.91620 1.01739 0.86145 0.88961 0.84217 0.92806 0.90148 0.74328 0.85133 0.80945 0.82539 0.83740 0.86755 0.91907 0.87791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 14.32 67.78 0.97 -0.27 16 2 C -0.18 -1.21 9.63 25.65 0.25 -0.96 16 3 C 0.14 1.71 6.11 85.63 0.52 2.23 16 4 N -0.71 -7.65 5.44 -466.78 -2.54 -10.19 16 5 C 0.52 9.24 7.07 87.66 0.62 9.86 16 6 O -0.54 -15.86 14.65 19.33 0.28 -15.57 16 7 C -0.04 -0.55 2.85 -14.09 -0.04 -0.59 16 8 H 0.24 -0.75 8.12 -2.39 -0.02 -0.77 16 9 C 0.23 4.12 14.39 89.44 1.29 5.40 16 10 N -0.43 -10.39 18.54 20.01 0.37 -10.02 16 11 C 0.37 8.04 6.04 29.10 0.18 8.21 16 12 O -0.44 -15.45 14.56 20.90 0.30 -15.15 16 13 C -0.12 -2.06 5.75 29.10 0.17 -1.90 16 14 C -0.04 -1.16 4.37 -19.88 -0.09 -1.25 16 15 C -0.18 -5.34 9.70 22.30 0.22 -5.12 16 16 C -0.08 -2.67 10.04 22.25 0.22 -2.45 16 17 C -0.25 -11.37 9.17 22.39 0.21 -11.17 16 18 C 0.11 5.67 6.65 22.58 0.15 5.82 16 19 O -0.24 -15.04 9.76 -22.67 -0.22 -15.26 16 20 C -0.41 -25.16 9.49 67.92 0.64 -24.51 16 21 H 0.10 5.62 5.20 -2.91 -0.02 5.60 16 22 C -0.03 -1.59 5.49 84.83 0.47 -1.12 16 23 N -0.92 -58.87 13.67 21.61 0.30 -58.57 16 24 Si 1.02 44.68 29.55 68.60 2.03 46.71 16 25 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 28 C -0.20 -8.71 9.65 22.39 0.22 -8.50 16 29 H 0.12 0.51 8.06 -2.91 -0.02 0.49 16 30 H 0.09 0.83 7.84 -2.91 -0.02 0.81 16 31 H 0.14 0.35 8.06 -2.91 -0.02 0.32 16 32 H 0.05 0.88 7.79 -2.39 -0.02 0.86 16 33 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.42 1.77 8.34 -92.71 -0.77 1.00 16 35 H 0.13 1.88 8.09 -2.38 -0.02 1.86 16 36 H 0.17 1.05 8.08 -2.39 -0.02 1.03 16 37 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 38 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 39 H 0.11 5.38 5.64 -2.91 -0.02 5.36 16 40 H 0.27 15.82 8.31 -92.70 -0.77 15.05 16 41 H 0.10 4.62 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -97.17 374.06 6.82 -90.35 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.31 Total: 13.99 kcal Atomic # 6 Polarization: -32.28 SS G_CDS: 5.99 Total: -26.30 kcal Atomic # 7 Polarization: -76.90 SS G_CDS: -1.87 Total: -78.78 kcal Atomic # 8 Polarization: -46.34 SS G_CDS: 0.37 Total: -45.98 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -97.17 6.82 -90.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810530503.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.229 kcal (2) G-P(sol) polarization free energy of solvation -97.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds