Wall clock time and date at job start Tue Mar 31 2020 14:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 110.32822 * 2 1 4 4 C 1.34775 * 119.99949 * 298.19781 * 3 2 1 5 5 O 1.21662 * 120.00490 * 5.30391 * 4 3 2 6 6 C 1.46892 * 119.99851 * 185.31494 * 4 3 2 7 7 C 1.36124 * 125.43766 * 173.70664 * 6 4 3 8 8 C 1.41699 * 107.74636 * 180.02562 * 7 6 4 9 9 C 1.40028 * 133.34447 * 179.97438 * 8 7 6 10 10 C 1.36576 * 119.82746 * 179.97438 * 9 8 7 11 11 C 1.38855 * 120.60271 * 0.04603 * 10 9 8 12 12 C 1.37853 * 120.63041 * 359.97150 * 11 10 9 13 13 C 1.39084 * 119.81472 * 0.02562 * 12 11 10 14 14 N 1.37836 * 133.16513 * 179.97438 * 13 12 11 15 15 C 1.36892 * 125.61940 * 0.03380 * 14 13 12 16 16 H 1.08000 * 120.00079 * 134.01604 * 15 14 13 17 17 C 1.39005 * 120.00214 * 314.02484 * 15 14 13 18 18 N 1.31351 * 120.00350 * 350.59893 * 17 15 14 19 19 Si 1.86809 * 120.00186 * 170.60145 * 17 15 14 20 20 H 1.48499 * 109.46790 * 94.98589 * 19 17 15 21 21 H 1.48494 * 109.47003 * 214.98110 * 19 17 15 22 22 H 1.48492 * 109.46909 * 334.98576 * 19 17 15 23 23 C 1.54488 * 110.37023 * 122.24589 * 2 1 3 24 24 C 1.54567 * 102.14976 * 134.29090 * 23 2 1 25 25 O 1.45840 * 104.44165 * 333.15147 * 24 23 2 26 26 C 1.34063 * 109.90959 * 30.60246 * 25 24 23 27 27 O 1.20817 * 125.09464 * 159.18970 * 26 25 24 28 28 H 1.09001 * 109.47329 * 59.30018 * 1 2 3 29 29 H 1.09005 * 109.46884 * 179.29807 * 1 2 3 30 30 H 1.08990 * 109.47061 * 299.29617 * 1 2 3 31 31 H 0.97001 * 120.00023 * 118.18850 * 3 2 1 32 32 H 1.08001 * 126.12661 * 359.75385 * 7 6 4 33 33 H 1.07998 * 120.08716 * 359.97438 * 9 8 7 34 34 H 1.07997 * 119.70129 * 180.02562 * 10 9 8 35 35 H 1.08002 * 119.68419 * 179.97438 * 11 10 9 36 36 H 1.08005 * 120.08918 * 180.02562 * 12 11 10 37 37 H 0.96997 * 120.00359 * 185.04177 * 18 17 15 38 38 H 1.09001 * 110.86424 * 252.45334 * 23 2 1 39 39 H 1.08997 * 110.87113 * 16.12514 * 23 2 1 40 40 H 1.09001 * 110.44223 * 91.88459 * 24 23 2 41 41 H 1.08996 * 110.44352 * 214.28256 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0390 1.3737 0.0000 4 6 1.7559 2.1972 -1.0287 5 8 0.9996 1.8330 -1.9093 6 6 2.3607 3.5346 -1.0867 7 6 2.2505 4.4062 -2.1265 8 6 2.9758 5.5756 -1.7885 9 6 3.2148 6.7843 -2.4539 10 6 3.9734 7.7502 -1.8565 11 6 4.5124 7.5451 -0.5934 12 6 4.2914 6.3634 0.0812 13 6 3.5220 5.3650 -0.5067 14 7 3.1336 4.1083 -0.0949 15 6 3.4584 3.5251 1.1002 16 1 2.6974 3.0266 1.6823 17 6 4.7676 3.5747 1.5648 18 7 5.7263 4.0138 0.7816 19 14 5.1637 3.0167 3.3031 20 1 5.6003 1.5975 3.2799 21 1 6.2524 3.8605 3.8578 22 1 3.9532 3.1484 4.1531 23 6 2.0678 -0.7727 1.2249 24 6 3.1702 -1.6543 0.5951 25 8 2.7464 -1.8332 -0.7889 26 6 2.0590 -0.7576 -1.1985 27 8 1.8872 -0.4409 -2.3517 28 1 -0.3634 0.5247 -0.8836 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3633 0.5028 0.8961 31 1 2.5796 1.6907 0.7404 32 1 1.7108 4.2352 -3.0463 33 1 2.8002 6.9524 -3.4369 34 1 4.1561 8.6818 -2.3714 35 1 5.1105 8.3189 -0.1350 36 1 4.7145 6.2134 1.0635 37 1 6.6490 3.9803 1.0788 38 1 2.4908 -0.0885 1.9605 39 1 1.2857 -1.3879 1.6699 40 1 4.1335 -1.1459 0.6354 41 1 3.2266 -2.6158 1.1053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813296097.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:03 Heat of formation + Delta-G solvation = -46.024038 kcal Electronic energy + Delta-G solvation = -28795.521325 eV Core-core repulsion = 24834.432185 eV Total energy + Delta-G solvation = -3961.089140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.27290 -40.39537 -38.39062 -37.16190 -35.97103 -35.17836 -33.66889 -31.63181 -30.76811 -29.52929 -28.89921 -27.89115 -25.36751 -25.12548 -23.31210 -22.56942 -21.07920 -20.65348 -19.67185 -19.24815 -18.28568 -17.23406 -16.81126 -16.31449 -16.02170 -15.70783 -14.96177 -14.90257 -14.49032 -14.41469 -14.20736 -14.03875 -13.54574 -13.18096 -13.04329 -12.95391 -12.66471 -12.51197 -12.31462 -12.13566 -11.97588 -11.89522 -11.75780 -11.54776 -11.48962 -11.28339 -10.84713 -10.72101 -10.54095 -10.25525 -10.08616 -9.82570 -9.39276 -9.25041 -8.68905 -8.58422 -7.22590 -6.92159 -6.65555 -4.79968 1.80468 2.21673 2.67381 2.83236 2.84111 2.87878 3.09365 3.33679 3.57238 3.64985 3.96473 4.11820 4.23867 4.48670 4.50280 4.59103 4.78995 5.03186 5.20977 5.29028 5.46819 5.54043 5.60378 5.76143 5.81965 5.86248 5.92154 6.12856 6.35052 6.40944 6.52219 6.65047 6.71785 6.73633 6.86921 6.91766 7.06538 7.08402 7.41372 7.53278 7.59635 7.74621 7.85670 7.88584 8.08663 8.23519 8.59333 8.91343 9.20811 10.04285 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.012557 B = 0.005487 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.382440 B = 5101.916622 C = 6730.358859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.119 3.881 3 N -0.717 5.717 4 C 0.593 3.407 5 O -0.521 6.521 6 C -0.015 4.015 7 C -0.160 4.160 8 C -0.134 4.134 9 C -0.083 4.083 10 C -0.161 4.161 11 C -0.143 4.143 12 C -0.059 4.059 13 C 0.110 3.890 14 N -0.263 5.263 15 C -0.380 4.380 16 H 0.105 0.895 17 C 0.060 3.940 18 N -0.813 5.813 19 Si 0.921 3.079 20 H -0.268 1.268 21 H -0.271 1.271 22 H -0.259 1.259 23 C -0.161 4.161 24 C 0.054 3.946 25 O -0.352 6.352 26 C 0.470 3.530 27 O -0.411 6.411 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.419 0.581 32 H 0.133 0.867 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.284 0.716 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.636 -5.662 6.566 9.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.030 3.970 3 N -0.383 5.383 4 C 0.382 3.618 5 O -0.397 6.397 6 C -0.130 4.130 7 C -0.188 4.188 8 C -0.139 4.139 9 C -0.102 4.102 10 C -0.181 4.181 11 C -0.164 4.164 12 C -0.079 4.079 13 C -0.005 4.005 14 N 0.073 4.927 15 C -0.507 4.507 16 H 0.122 0.878 17 C -0.155 4.155 18 N -0.440 5.440 19 Si 0.744 3.256 20 H -0.193 1.193 21 H -0.196 1.196 22 H -0.183 1.183 23 C -0.199 4.199 24 C -0.021 4.021 25 O -0.269 6.269 26 C 0.305 3.695 27 O -0.288 6.288 28 H 0.110 0.890 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.267 0.733 32 H 0.151 0.849 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.095 0.905 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.106 0.894 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.879 -6.099 5.583 8.756 hybrid contribution 0.867 -0.076 1.315 1.577 sum -2.012 -6.175 6.899 9.475 Atomic orbital electron populations 1.22102 0.91208 1.02709 1.05083 1.21458 0.97182 0.84814 0.93588 1.46730 1.56107 1.09347 1.26120 1.17350 0.80066 0.83328 0.81029 1.90781 1.35227 1.75413 1.38276 1.20089 1.06514 0.94345 0.92036 1.20418 1.06290 0.93446 0.98676 1.18037 1.04113 0.95705 0.96036 1.20080 0.99287 0.92411 0.98459 1.20270 1.02431 0.98905 0.96451 1.20579 1.02903 0.97131 0.95790 1.20010 0.96944 0.91188 0.99755 1.18242 1.01102 0.86277 0.94903 1.39878 1.33289 1.08361 1.11204 1.19443 0.94926 1.39978 0.96403 0.87779 1.25718 0.95175 0.94698 0.99902 1.69913 1.01160 1.36977 1.35975 0.85987 0.79585 0.79261 0.80720 1.19309 1.19589 1.18310 1.23286 0.99654 0.99630 0.97319 1.24104 0.98110 1.01914 0.77971 1.87031 1.67949 1.40986 1.30916 1.23405 0.76435 0.78920 0.90724 1.90786 1.53931 1.63765 1.20348 0.88988 0.91751 0.91056 0.73305 0.84904 0.87682 0.87863 0.87656 0.86976 0.90490 0.87694 0.87795 0.89391 0.86988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.40 37.16 0.31 -1.85 16 2 C 0.12 1.84 0.97 -131.88 -0.13 1.71 16 3 N -0.72 -13.41 5.08 -48.89 -0.25 -13.66 16 4 C 0.59 13.34 7.14 -12.76 -0.09 13.25 16 5 O -0.52 -12.55 12.76 -16.99 -0.22 -12.76 16 6 C -0.02 -0.37 6.77 -82.25 -0.56 -0.93 16 7 C -0.16 -3.81 10.55 -39.02 -0.41 -4.22 16 8 C -0.13 -3.16 6.16 -106.89 -0.66 -3.82 16 9 C -0.08 -1.71 10.06 -39.51 -0.40 -2.11 16 10 C -0.16 -3.08 9.97 -39.95 -0.40 -3.48 16 11 C -0.14 -2.86 10.02 -39.49 -0.40 -3.26 16 12 C -0.06 -1.35 8.66 -39.41 -0.34 -1.69 16 13 C 0.11 2.69 6.03 -83.84 -0.51 2.18 16 14 N -0.26 -6.40 2.78 -56.08 -0.16 -6.55 16 15 C -0.38 -8.56 7.67 -15.01 -0.12 -8.68 16 16 H 0.11 2.13 6.43 -52.49 -0.34 1.79 16 17 C 0.06 1.31 4.73 -17.47 -0.08 1.23 16 18 N -0.81 -19.35 11.13 55.50 0.62 -18.73 16 19 Si 0.92 16.02 29.57 -169.99 -5.03 11.00 16 20 H -0.27 -4.44 7.11 56.52 0.40 -4.04 16 21 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 22 H -0.26 -4.36 7.11 56.52 0.40 -3.96 16 23 C -0.16 -1.68 6.51 -25.13 -0.16 -1.84 16 24 C 0.05 0.57 7.90 37.98 0.30 0.87 16 25 O -0.35 -5.46 11.05 -38.47 -0.43 -5.88 16 26 C 0.47 8.67 7.27 36.32 0.26 8.93 16 27 O -0.41 -9.36 15.63 -26.00 -0.41 -9.77 16 28 H 0.09 1.61 6.18 -51.93 -0.32 1.29 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.42 7.64 4.04 -40.82 -0.16 7.48 16 32 H 0.13 2.95 8.06 -52.49 -0.42 2.53 16 33 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 34 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 35 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.11 2.57 6.89 -52.48 -0.36 2.21 16 37 H 0.28 6.30 8.31 -40.82 -0.34 5.96 16 38 H 0.10 1.00 7.63 -51.93 -0.40 0.60 16 39 H 0.10 0.78 7.81 -51.93 -0.41 0.37 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 340.23 15.07 5.13 5.13 Total: -1.00 -30.86 340.23 -8.61 -39.47 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -4.50 Total: 15.46 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -3.37 Total: -3.68 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.21 Total: -38.95 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -1.05 Total: -28.42 kcal Atomic # 14 Polarization: 16.02 SS G_CDS: -5.03 Total: 11.00 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.86 -8.61 -39.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813296097.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.554 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds