Wall clock time and date at job start Tue Mar 31 2020 14:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 110.32822 * 2 1 4 4 C 1.34775 * 119.99949 * 298.19781 * 3 2 1 5 5 O 1.21662 * 120.00490 * 5.30391 * 4 3 2 6 6 C 1.46892 * 119.99851 * 185.31494 * 4 3 2 7 7 C 1.36124 * 125.43766 * 173.70664 * 6 4 3 8 8 C 1.41699 * 107.74636 * 180.02562 * 7 6 4 9 9 C 1.40028 * 133.34447 * 179.97438 * 8 7 6 10 10 C 1.36576 * 119.82746 * 179.97438 * 9 8 7 11 11 C 1.38855 * 120.60271 * 0.04603 * 10 9 8 12 12 C 1.37853 * 120.63041 * 359.97150 * 11 10 9 13 13 C 1.39084 * 119.81472 * 0.02562 * 12 11 10 14 14 N 1.37836 * 133.16513 * 179.97438 * 13 12 11 15 15 C 1.36892 * 125.61940 * 0.03380 * 14 13 12 16 16 H 1.08000 * 120.00079 * 134.01604 * 15 14 13 17 17 C 1.39005 * 120.00214 * 314.02484 * 15 14 13 18 18 N 1.31351 * 120.00350 * 350.59893 * 17 15 14 19 19 Si 1.86809 * 120.00186 * 170.60145 * 17 15 14 20 20 H 1.48499 * 109.46790 * 94.98589 * 19 17 15 21 21 H 1.48494 * 109.47003 * 214.98110 * 19 17 15 22 22 H 1.48492 * 109.46909 * 334.98576 * 19 17 15 23 23 C 1.54488 * 110.37023 * 122.24589 * 2 1 3 24 24 C 1.54567 * 102.14976 * 134.29090 * 23 2 1 25 25 O 1.45840 * 104.44165 * 333.15147 * 24 23 2 26 26 C 1.34063 * 109.90959 * 30.60246 * 25 24 23 27 27 O 1.20817 * 125.09464 * 159.18970 * 26 25 24 28 28 H 1.09001 * 109.47329 * 59.30018 * 1 2 3 29 29 H 1.09005 * 109.46884 * 179.29807 * 1 2 3 30 30 H 1.08990 * 109.47061 * 299.29617 * 1 2 3 31 31 H 0.97001 * 120.00023 * 118.18850 * 3 2 1 32 32 H 1.08001 * 126.12661 * 359.75385 * 7 6 4 33 33 H 1.07998 * 120.08716 * 359.97438 * 9 8 7 34 34 H 1.07997 * 119.70129 * 180.02562 * 10 9 8 35 35 H 1.08002 * 119.68419 * 179.97438 * 11 10 9 36 36 H 1.08005 * 120.08918 * 180.02562 * 12 11 10 37 37 H 0.96997 * 120.00359 * 185.04177 * 18 17 15 38 38 H 1.09001 * 110.86424 * 252.45334 * 23 2 1 39 39 H 1.08997 * 110.87113 * 16.12514 * 23 2 1 40 40 H 1.09001 * 110.44223 * 91.88459 * 24 23 2 41 41 H 1.08996 * 110.44352 * 214.28256 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0390 1.3737 0.0000 4 6 1.7559 2.1972 -1.0287 5 8 0.9996 1.8330 -1.9093 6 6 2.3607 3.5346 -1.0867 7 6 2.2505 4.4062 -2.1265 8 6 2.9758 5.5756 -1.7885 9 6 3.2148 6.7843 -2.4539 10 6 3.9734 7.7502 -1.8565 11 6 4.5124 7.5451 -0.5934 12 6 4.2914 6.3634 0.0812 13 6 3.5220 5.3650 -0.5067 14 7 3.1336 4.1083 -0.0949 15 6 3.4584 3.5251 1.1002 16 1 2.6974 3.0266 1.6823 17 6 4.7676 3.5747 1.5648 18 7 5.7263 4.0138 0.7816 19 14 5.1637 3.0167 3.3031 20 1 5.6003 1.5975 3.2799 21 1 6.2524 3.8605 3.8578 22 1 3.9532 3.1484 4.1531 23 6 2.0678 -0.7727 1.2249 24 6 3.1702 -1.6543 0.5951 25 8 2.7464 -1.8332 -0.7889 26 6 2.0590 -0.7576 -1.1985 27 8 1.8872 -0.4409 -2.3517 28 1 -0.3634 0.5247 -0.8836 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3633 0.5028 0.8961 31 1 2.5796 1.6907 0.7404 32 1 1.7108 4.2352 -3.0463 33 1 2.8002 6.9524 -3.4369 34 1 4.1561 8.6818 -2.3714 35 1 5.1105 8.3189 -0.1350 36 1 4.7145 6.2134 1.0635 37 1 6.6490 3.9803 1.0788 38 1 2.4908 -0.0885 1.9605 39 1 1.2857 -1.3879 1.6699 40 1 4.1335 -1.1459 0.6354 41 1 3.2266 -2.6158 1.1053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813296097.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:01 Heat of formation + Delta-G solvation = -63.799901 kcal Electronic energy + Delta-G solvation = -28796.292144 eV Core-core repulsion = 24834.432185 eV Total energy + Delta-G solvation = -3961.859959 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.63080 -42.02073 -39.98573 -38.60917 -37.62015 -36.59730 -35.34212 -33.01877 -32.45803 -30.74884 -30.40418 -29.52703 -26.84738 -26.56117 -24.89049 -23.65926 -22.74837 -22.20214 -21.19829 -20.83076 -19.93669 -18.57821 -18.20427 -17.85202 -17.38700 -17.26454 -16.48346 -16.43489 -16.00465 -15.89691 -15.59883 -15.32967 -14.96528 -14.75458 -14.60999 -14.54461 -14.25119 -13.72063 -13.58585 -13.54535 -13.38737 -13.35420 -13.11027 -12.83019 -12.74502 -12.65273 -12.35093 -12.17133 -11.88229 -11.56695 -11.49499 -11.46712 -11.01165 -10.90296 -10.41273 -10.10771 -8.92127 -8.62726 -8.35901 -6.54185 0.09445 0.82219 1.09253 1.35417 1.41684 1.44941 1.56853 2.09060 2.14827 2.22106 2.48009 2.75115 2.82079 2.93865 3.16453 3.33586 3.61386 3.91799 3.99506 4.19913 4.24011 4.40884 4.51724 4.56219 4.59893 4.60675 4.71662 4.78756 4.82356 4.87118 4.98543 5.05680 5.14515 5.21671 5.32258 5.36597 5.43124 5.65743 5.73897 5.88182 5.94082 6.16461 6.21668 6.36949 6.49157 6.55253 6.88664 7.24853 7.49032 8.40515 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.012557 B = 0.005487 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.382440 B = 5101.916622 C = 6730.358859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.109 3.891 3 N -0.707 5.707 4 C 0.587 3.413 5 O -0.547 6.547 6 C -0.043 4.043 7 C -0.184 4.184 8 C -0.157 4.157 9 C -0.093 4.093 10 C -0.153 4.153 11 C -0.135 4.135 12 C -0.083 4.083 13 C 0.078 3.922 14 N -0.270 5.270 15 C -0.398 4.398 16 H 0.121 0.879 17 C 0.023 3.977 18 N -0.853 5.853 19 Si 0.992 3.008 20 H -0.248 1.248 21 H -0.280 1.280 22 H -0.246 1.246 23 C -0.147 4.147 24 C 0.045 3.955 25 O -0.361 6.361 26 C 0.464 3.536 27 O -0.472 6.472 28 H 0.050 0.950 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.422 0.578 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.146 0.854 35 H 0.139 0.861 36 H 0.101 0.899 37 H 0.286 0.714 38 H 0.121 0.879 39 H 0.146 0.854 40 H 0.084 0.916 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.110 -6.211 9.506 11.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.020 3.980 3 N -0.371 5.371 4 C 0.376 3.624 5 O -0.425 6.425 6 C -0.157 4.157 7 C -0.212 4.212 8 C -0.161 4.161 9 C -0.112 4.112 10 C -0.171 4.171 11 C -0.155 4.155 12 C -0.103 4.103 13 C -0.037 4.037 14 N 0.065 4.935 15 C -0.525 4.525 16 H 0.138 0.862 17 C -0.188 4.188 18 N -0.481 5.481 19 Si 0.811 3.189 20 H -0.172 1.172 21 H -0.205 1.205 22 H -0.169 1.169 23 C -0.185 4.185 24 C -0.028 4.028 25 O -0.278 6.278 26 C 0.302 3.698 27 O -0.354 6.354 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.270 0.730 32 H 0.151 0.849 33 H 0.148 0.852 34 H 0.164 0.836 35 H 0.157 0.843 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.139 0.861 39 H 0.164 0.836 40 H 0.103 0.897 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.352 -6.677 8.565 11.112 hybrid contribution 0.765 0.139 0.385 0.868 sum -1.587 -6.538 8.950 11.197 Atomic orbital electron populations 1.22082 0.90155 1.04314 1.04112 1.21868 0.98125 0.83030 0.94935 1.46624 1.55321 1.10377 1.24736 1.17333 0.79957 0.83393 0.81719 1.90763 1.36427 1.75864 1.39406 1.20507 1.07315 0.95424 0.92503 1.20597 1.07242 0.94288 0.99071 1.18411 1.04520 0.96787 0.96410 1.20471 0.99553 0.91634 0.99558 1.20733 1.00548 0.99900 0.95951 1.21033 1.01907 0.96630 0.95924 1.20101 0.98015 0.92251 0.99941 1.18703 1.02225 0.86937 0.95815 1.40126 1.33143 1.08546 1.11637 1.19981 0.95946 1.40375 0.96163 0.86209 1.26706 0.94344 0.94001 1.03755 1.70044 1.01612 1.38261 1.38228 0.84938 0.79339 0.79477 0.75123 1.17176 1.20546 1.16854 1.23449 1.00520 0.99434 0.95048 1.24609 0.97850 1.04711 0.75642 1.87003 1.67138 1.39772 1.33882 1.24006 0.75770 0.79268 0.90747 1.90745 1.56147 1.65633 1.22867 0.93104 0.88749 0.88879 0.73025 0.84852 0.85215 0.83617 0.84339 0.88042 0.90414 0.86084 0.83565 0.89736 0.82162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 8.40 71.98 0.60 -3.44 16 2 C 0.11 3.25 0.97 3.57 0.00 3.25 16 3 N -0.71 -26.62 5.08 -426.82 -2.17 -28.79 16 4 C 0.59 27.76 7.14 86.51 0.62 28.38 16 5 O -0.55 -28.06 12.76 17.01 0.22 -27.84 16 6 C -0.04 -2.17 6.77 39.91 0.27 -1.90 16 7 C -0.18 -9.27 10.55 22.63 0.24 -9.03 16 8 C -0.16 -7.63 6.16 -21.34 -0.13 -7.76 16 9 C -0.09 -3.79 10.06 22.32 0.22 -3.56 16 10 C -0.15 -5.49 9.97 22.03 0.22 -5.27 16 11 C -0.13 -5.17 10.02 22.33 0.22 -4.95 16 12 C -0.08 -3.83 8.66 22.38 0.19 -3.64 16 13 C 0.08 3.94 6.03 39.06 0.24 4.17 16 14 N -0.27 -13.62 2.78 -331.35 -0.92 -14.54 16 15 C -0.40 -18.09 7.67 84.09 0.65 -17.44 16 16 H 0.12 4.84 6.43 -2.91 -0.02 4.82 16 17 C 0.02 0.99 4.73 84.95 0.40 1.40 16 18 N -0.85 -41.26 11.13 21.67 0.24 -41.02 16 19 Si 0.99 31.35 29.57 68.60 2.03 33.38 16 20 H -0.25 -7.01 7.11 99.48 0.71 -6.30 16 21 H -0.28 -9.22 7.11 99.48 0.71 -8.51 16 22 H -0.25 -7.16 7.11 99.48 0.71 -6.45 16 23 C -0.15 -2.46 6.51 31.63 0.21 -2.26 16 24 C 0.04 0.79 7.90 72.52 0.57 1.37 16 25 O -0.36 -10.79 11.05 -50.15 -0.55 -11.34 16 26 C 0.46 17.35 7.27 71.44 0.52 17.87 16 27 O -0.47 -22.76 15.63 28.93 0.45 -22.31 16 28 H 0.05 1.83 6.18 -2.39 -0.01 1.82 16 29 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.42 15.18 4.04 -92.71 -0.37 14.80 16 32 H 0.13 6.41 8.06 -2.91 -0.02 6.38 16 33 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 34 H 0.15 4.00 8.06 -2.91 -0.02 3.97 16 35 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 36 H 0.10 4.77 6.89 -2.91 -0.02 4.75 16 37 H 0.29 12.83 8.31 -92.71 -0.77 12.06 16 38 H 0.12 1.72 7.63 -2.39 -0.02 1.70 16 39 H 0.15 1.29 7.81 -2.39 -0.02 1.27 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.16 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -74.40 340.23 5.05 -69.34 By element: Atomic # 1 Polarization: 45.20 SS G_CDS: 0.71 Total: 45.92 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: 5.05 Total: -2.80 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -2.85 Total: -84.35 kcal Atomic # 8 Polarization: -61.61 SS G_CDS: 0.11 Total: -61.49 kcal Atomic # 14 Polarization: 31.35 SS G_CDS: 2.03 Total: 33.38 kcal Total: -74.40 5.05 -69.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813296097.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.541 kcal (2) G-P(sol) polarization free energy of solvation -74.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds