Wall clock time and date at job start Tue Mar 31 2020 15:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50705 * 119.99866 * 2 1 4 4 N 1.46493 * 109.46966 * 125.00212 * 3 2 1 5 5 C 1.46504 * 119.99935 * 269.99373 * 4 3 2 6 6 C 1.50693 * 109.47339 * 270.00284 * 5 4 3 7 7 H 1.08002 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00109 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00035 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99846 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47054 * 90.00407 * 10 8 6 12 12 H 1.48500 * 109.46738 * 210.00190 * 10 8 6 13 13 H 1.48500 * 109.47182 * 330.00110 * 10 8 6 14 14 C 1.34772 * 120.00266 * 89.99558 * 4 3 2 15 15 O 1.21591 * 120.00262 * 179.97438 * 14 4 3 16 16 N 1.34779 * 120.00187 * 0.02562 * 14 4 3 17 17 C 1.40089 * 120.00179 * 184.57634 * 16 14 4 18 18 C 1.39354 * 119.90125 * 144.85814 * 17 16 14 19 19 C 1.37781 * 120.60615 * 180.02562 * 18 17 16 20 20 C 1.38929 * 120.06566 * 359.95968 * 19 18 17 21 21 O 1.35091 * 120.63665 * 180.02562 * 20 19 18 22 22 C 1.34172 * 121.49839 * 179.97438 * 21 20 19 23 23 O 1.21777 * 119.15367 * 180.02562 * 22 21 20 24 24 C 1.41174 * 121.68749 * 359.97438 * 22 21 20 25 25 C 1.35702 * 119.78849 * 0.02562 * 24 22 21 26 26 C 1.40578 * 119.55122 * 359.78491 * 20 19 18 27 27 C 1.38237 * 119.89989 * 324.87674 * 17 16 14 28 28 H 1.08007 * 120.00090 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.00525 * 180.02562 * 1 2 3 30 30 H 1.07996 * 119.99614 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47118 * 4.99405 * 3 2 1 32 32 H 1.09004 * 109.46701 * 245.00001 * 3 2 1 33 33 H 1.08999 * 109.46572 * 30.00183 * 5 4 3 34 34 H 1.08997 * 109.47285 * 149.99944 * 5 4 3 35 35 H 0.96994 * 119.99814 * 179.97438 * 9 8 6 36 36 H 0.96995 * 119.99746 * 4.57069 * 16 14 4 37 37 H 1.08001 * 119.69729 * 0.02562 * 18 17 16 38 38 H 1.08004 * 119.96520 * 179.97438 * 19 18 17 39 39 H 1.07995 * 120.10322 * 180.02562 * 24 22 21 40 40 H 1.07998 * 120.90845 * 180.02562 * 25 24 22 41 41 H 1.08001 * 120.21873 * 359.95766 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5588 1.8650 2.4248 6 6 2.8443 3.3437 2.4803 7 1 3.3033 3.8371 1.6364 8 6 2.5184 4.0668 3.6081 9 7 1.9590 3.4661 4.6356 10 14 2.8716 5.8999 3.6766 11 1 1.6987 6.6496 3.1597 12 1 3.1353 6.3010 5.0819 13 1 4.0616 6.2062 2.8428 14 6 4.2496 0.8661 0.9824 15 8 5.0218 0.8888 1.9213 16 7 4.6499 0.3762 -0.2077 17 6 5.9222 -0.1955 -0.3376 18 6 6.1117 -1.2827 -1.1886 19 6 7.3566 -1.8566 -1.3270 20 6 8.4384 -1.3523 -0.6160 21 8 9.6642 -1.9057 -0.7434 22 6 10.7209 -1.4324 -0.0655 23 8 11.8067 -1.9637 -0.2130 24 6 10.6065 -0.3336 0.8135 25 6 9.4027 0.2684 0.9870 26 6 8.2537 -0.2523 0.2396 27 6 6.9859 0.3202 0.3789 28 1 -0.5400 0.9354 -0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3585 2.1317 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 1.4887 1.6968 2.5458 34 1 3.0989 1.3604 3.2259 35 1 1.7302 3.9748 5.4291 36 1 4.0570 0.4193 -0.9741 37 1 5.2750 -1.6791 -1.7447 38 1 7.4917 -2.6991 -1.9891 39 1 11.4742 0.0267 1.3460 40 1 9.2947 1.1104 1.6546 41 1 6.8395 1.1631 1.0382 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813819111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:19 Heat of formation + Delta-G solvation = -18.595611 kcal Electronic energy + Delta-G solvation = -26898.828123 eV Core-core repulsion = 22938.928370 eV Total energy + Delta-G solvation = -3959.899754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.92150 -40.35350 -38.70975 -37.35174 -35.90381 -35.03492 -33.99916 -33.22031 -32.21761 -30.57000 -29.31784 -27.49480 -25.68037 -24.72243 -24.19211 -23.37227 -22.53884 -20.26674 -19.74720 -19.53342 -18.51953 -17.61621 -17.16608 -16.79485 -16.66197 -16.39076 -15.51072 -15.18862 -15.10041 -14.81877 -14.54128 -14.27457 -14.08225 -13.85294 -13.70588 -13.31011 -12.99350 -12.90385 -12.63488 -12.46240 -12.19587 -11.90462 -11.67720 -11.40889 -11.22131 -10.99536 -10.94899 -10.69283 -10.40513 -10.26962 -9.94866 -9.76421 -9.47246 -9.34159 -8.77382 -8.52102 -8.12595 -7.75581 -6.12982 -4.18383 0.08913 0.92900 1.45062 2.27423 2.33619 2.68082 3.00847 3.23601 3.31154 3.34439 3.46851 3.77524 4.01539 4.18053 4.26709 4.33912 4.41498 4.83678 4.86801 4.97512 5.06218 5.21292 5.24218 5.28137 5.38000 5.40879 5.56503 5.71904 5.81013 5.85648 5.98330 6.00914 6.09914 6.24744 6.58572 6.66273 6.79958 6.82160 7.08391 7.23097 7.35691 7.37403 7.50400 7.83615 8.12254 8.37509 8.81219 9.02934 9.47167 10.94901 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.012833 B = 0.003225 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.332930 B = 8679.188346 C =10497.808488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.174 4.174 3 C 0.136 3.864 4 N -0.599 5.599 5 C 0.261 3.739 6 C -0.530 4.530 7 H 0.057 0.943 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.699 3.301 15 O -0.568 6.568 16 N -0.695 5.695 17 C 0.158 3.842 18 C -0.095 4.095 19 C -0.115 4.115 20 C 0.117 3.883 21 O -0.272 6.272 22 C 0.510 3.490 23 O -0.476 6.476 24 C -0.258 4.258 25 C 0.014 3.986 26 C -0.141 4.141 27 C -0.057 4.057 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.035 0.965 34 H 0.045 0.955 35 H 0.264 0.736 36 H 0.405 0.595 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.162 0.838 40 H 0.156 0.844 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.317 -7.794 -13.366 16.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.194 4.194 3 C 0.012 3.988 4 N -0.333 5.333 5 C 0.142 3.858 6 C -0.569 4.569 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.531 5.531 10 Si 0.726 3.274 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.401 3.599 15 O -0.444 6.444 16 N -0.346 5.346 17 C 0.062 3.938 18 C -0.116 4.116 19 C -0.134 4.134 20 C 0.072 3.928 21 O -0.183 6.183 22 C 0.359 3.641 23 O -0.365 6.365 24 C -0.277 4.277 25 C -0.004 4.004 26 C -0.143 4.143 27 C -0.077 4.077 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.242 0.758 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.180 0.820 40 H 0.173 0.827 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.239 -8.084 -12.589 15.852 hybrid contribution -0.307 1.140 -0.077 1.183 sum 4.932 -6.944 -12.666 15.264 Atomic orbital electron populations 1.23849 0.95826 1.01913 0.99800 1.23421 0.96519 0.98856 1.00573 1.20555 0.93220 0.95858 0.89134 1.47608 1.08645 1.62676 1.14348 1.19268 0.95369 0.93633 0.77482 1.21423 1.40862 0.93272 1.01314 0.92432 1.24922 0.94999 0.98759 0.95295 1.69925 1.41807 1.36221 1.05193 0.86504 0.78602 0.84933 0.77408 1.20641 1.21058 1.19913 1.15940 0.83372 0.78632 0.81990 1.90886 1.52685 1.61502 1.39317 1.42990 1.15281 1.63782 1.12514 1.17444 0.84820 0.93351 0.98218 1.20902 0.97087 0.93674 0.99934 1.20203 0.89547 1.02116 1.01525 1.19023 0.82749 0.93504 0.97560 1.83506 1.16348 1.56583 1.61898 1.19244 0.82078 0.83593 0.79167 1.90960 1.21581 1.60113 1.63886 1.22556 1.00510 0.99821 1.04854 1.22964 0.90209 0.95570 0.91676 1.19042 0.95303 0.98535 1.01377 1.21517 0.88371 0.99657 0.98189 0.88173 0.88669 0.87738 0.88881 0.91485 0.94673 0.93655 0.92621 0.75807 0.84138 0.83769 0.82034 0.82666 0.81997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 14.32 29.01 0.42 -1.57 16 2 C -0.17 -2.13 9.85 -36.02 -0.35 -2.49 16 3 C 0.14 1.91 5.65 -5.20 -0.03 1.88 16 4 N -0.60 -11.37 2.44 -182.19 -0.44 -11.81 16 5 C 0.26 6.35 5.16 -5.19 -0.03 6.33 16 6 C -0.53 -14.07 9.39 -34.44 -0.32 -14.39 16 7 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -25.42 13.29 55.43 0.74 -24.69 16 10 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 14 C 0.70 13.03 8.12 -86.92 -0.71 12.33 16 15 O -0.57 -12.83 13.35 5.29 0.07 -12.76 16 16 N -0.70 -9.31 5.22 -14.22 -0.07 -9.38 16 17 C 0.16 2.01 6.30 -83.67 -0.53 1.48 16 18 C -0.10 -0.91 9.93 -39.33 -0.39 -1.30 16 19 C -0.11 -1.14 9.99 -39.49 -0.39 -1.53 16 20 C 0.12 1.42 6.76 -38.44 -0.26 1.16 16 21 O -0.27 -3.66 9.82 -20.86 -0.20 -3.86 16 22 C 0.51 7.05 7.89 31.85 0.25 7.30 16 23 O -0.48 -7.89 17.91 -19.59 -0.35 -8.24 16 24 C -0.26 -2.83 9.94 -39.38 -0.39 -3.22 16 25 C 0.01 0.15 10.13 -37.11 -0.38 -0.22 16 26 C -0.14 -1.75 5.87 -105.04 -0.62 -2.37 16 27 C -0.06 -0.78 8.47 -39.00 -0.33 -1.11 16 28 H 0.10 1.11 7.84 -52.48 -0.41 0.70 16 29 H 0.09 0.93 8.06 -52.49 -0.42 0.50 16 30 H 0.10 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.09 1.38 7.72 -51.93 -0.40 0.97 16 32 H 0.07 0.72 6.30 -51.93 -0.33 0.40 16 33 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 34 H 0.05 1.26 7.42 -51.93 -0.39 0.88 16 35 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.40 4.11 6.52 -40.82 -0.27 3.84 16 37 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 39 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 41 H 0.16 2.60 6.21 -52.49 -0.33 2.27 16 LS Contribution 360.65 15.07 5.43 5.43 Total: -1.00 -33.32 360.65 -8.63 -41.95 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -4.62 Total: 3.65 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -4.16 Total: 3.86 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.22 Total: -45.88 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.48 Total: -24.86 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.32 -8.63 -41.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813819111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.349 kcal (2) G-P(sol) polarization free energy of solvation -33.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds