Wall clock time and date at job start Tue Mar 31 2020 15:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50705 * 119.99866 * 2 1 4 4 N 1.46493 * 109.46966 * 125.00212 * 3 2 1 5 5 C 1.46504 * 119.99935 * 269.99373 * 4 3 2 6 6 C 1.50693 * 109.47339 * 270.00284 * 5 4 3 7 7 H 1.08002 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00109 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00035 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99846 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47054 * 90.00407 * 10 8 6 12 12 H 1.48500 * 109.46738 * 210.00190 * 10 8 6 13 13 H 1.48500 * 109.47182 * 330.00110 * 10 8 6 14 14 C 1.34772 * 120.00266 * 89.99558 * 4 3 2 15 15 O 1.21591 * 120.00262 * 179.97438 * 14 4 3 16 16 N 1.34779 * 120.00187 * 0.02562 * 14 4 3 17 17 C 1.40089 * 120.00179 * 184.57634 * 16 14 4 18 18 C 1.39354 * 119.90125 * 144.85814 * 17 16 14 19 19 C 1.37781 * 120.60615 * 180.02562 * 18 17 16 20 20 C 1.38929 * 120.06566 * 359.95968 * 19 18 17 21 21 O 1.35091 * 120.63665 * 180.02562 * 20 19 18 22 22 C 1.34172 * 121.49839 * 179.97438 * 21 20 19 23 23 O 1.21777 * 119.15367 * 180.02562 * 22 21 20 24 24 C 1.41174 * 121.68749 * 359.97438 * 22 21 20 25 25 C 1.35702 * 119.78849 * 0.02562 * 24 22 21 26 26 C 1.40578 * 119.55122 * 359.78491 * 20 19 18 27 27 C 1.38237 * 119.89989 * 324.87674 * 17 16 14 28 28 H 1.08007 * 120.00090 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.00525 * 180.02562 * 1 2 3 30 30 H 1.07996 * 119.99614 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47118 * 4.99405 * 3 2 1 32 32 H 1.09004 * 109.46701 * 245.00001 * 3 2 1 33 33 H 1.08999 * 109.46572 * 30.00183 * 5 4 3 34 34 H 1.08997 * 109.47285 * 149.99944 * 5 4 3 35 35 H 0.96994 * 119.99814 * 179.97438 * 9 8 6 36 36 H 0.96995 * 119.99746 * 4.57069 * 16 14 4 37 37 H 1.08001 * 119.69729 * 0.02562 * 18 17 16 38 38 H 1.08004 * 119.96520 * 179.97438 * 19 18 17 39 39 H 1.07995 * 120.10322 * 180.02562 * 24 22 21 40 40 H 1.07998 * 120.90845 * 180.02562 * 25 24 22 41 41 H 1.08001 * 120.21873 * 359.95766 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5588 1.8650 2.4248 6 6 2.8443 3.3437 2.4803 7 1 3.3033 3.8371 1.6364 8 6 2.5184 4.0668 3.6081 9 7 1.9590 3.4661 4.6356 10 14 2.8716 5.8999 3.6766 11 1 1.6987 6.6496 3.1597 12 1 3.1353 6.3010 5.0819 13 1 4.0616 6.2062 2.8428 14 6 4.2496 0.8661 0.9824 15 8 5.0218 0.8888 1.9213 16 7 4.6499 0.3762 -0.2077 17 6 5.9222 -0.1955 -0.3376 18 6 6.1117 -1.2827 -1.1886 19 6 7.3566 -1.8566 -1.3270 20 6 8.4384 -1.3523 -0.6160 21 8 9.6642 -1.9057 -0.7434 22 6 10.7209 -1.4324 -0.0655 23 8 11.8067 -1.9637 -0.2130 24 6 10.6065 -0.3336 0.8135 25 6 9.4027 0.2684 0.9870 26 6 8.2537 -0.2523 0.2396 27 6 6.9859 0.3202 0.3789 28 1 -0.5400 0.9354 -0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3585 2.1317 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 1.4887 1.6968 2.5458 34 1 3.0989 1.3604 3.2259 35 1 1.7302 3.9748 5.4291 36 1 4.0570 0.4193 -0.9741 37 1 5.2750 -1.6791 -1.7447 38 1 7.4917 -2.6991 -1.9891 39 1 11.4742 0.0267 1.3460 40 1 9.2947 1.1104 1.6546 41 1 6.8395 1.1631 1.0382 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813819111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:18 Heat of formation + Delta-G solvation = -37.502852 kcal Electronic energy + Delta-G solvation = -26899.648003 eV Core-core repulsion = 22938.928370 eV Total energy + Delta-G solvation = -3960.719633 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.92694 -41.64204 -39.83444 -38.47659 -37.24434 -36.11505 -35.26628 -34.74815 -33.69781 -31.51551 -30.53133 -29.12000 -26.95909 -25.66391 -25.54798 -24.58261 -23.86657 -21.44740 -20.75934 -20.69084 -19.57314 -18.84069 -18.59516 -18.22058 -17.84864 -17.65573 -16.76956 -16.55083 -16.25832 -15.97161 -15.90440 -15.49828 -15.11950 -14.93875 -14.81850 -14.47590 -14.34444 -14.10506 -13.88597 -13.62278 -13.37807 -13.27094 -13.05033 -12.85788 -12.64800 -12.55283 -12.25016 -12.19663 -11.94229 -11.66488 -11.45492 -11.05908 -10.92082 -10.61489 -10.31713 -9.72589 -9.55173 -8.95809 -8.19259 -6.33676 -0.82295 -0.06313 0.52770 1.26071 1.34926 1.39371 1.41664 1.51489 1.66689 1.84257 2.18765 2.40695 2.70967 2.99039 3.08450 3.11375 3.38192 3.44526 3.96696 3.98357 4.06311 4.15074 4.23192 4.35209 4.44183 4.56185 4.67554 4.81063 4.81399 4.96027 4.97222 5.06505 5.07490 5.18268 5.25067 5.29689 5.52351 5.72157 5.74727 5.76103 5.92849 6.05740 6.07277 6.08620 6.35007 6.75699 7.02814 7.33385 7.61264 8.87128 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.012833 B = 0.003225 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.332930 B = 8679.188346 C =10497.808488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.185 4.185 3 C 0.133 3.867 4 N -0.606 5.606 5 C 0.281 3.719 6 C -0.540 4.540 7 H 0.055 0.945 8 C 0.010 3.990 9 N -0.927 5.927 10 Si 0.964 3.036 11 H -0.266 1.266 12 H -0.284 1.284 13 H -0.272 1.272 14 C 0.696 3.304 15 O -0.616 6.616 16 N -0.672 5.672 17 C 0.140 3.860 18 C -0.071 4.071 19 C -0.104 4.104 20 C 0.104 3.896 21 O -0.278 6.278 22 C 0.505 3.495 23 O -0.513 6.513 24 C -0.257 4.257 25 C 0.020 3.980 26 C -0.150 4.150 27 C -0.076 4.076 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.024 0.976 34 H 0.000 1.000 35 H 0.266 0.734 36 H 0.423 0.577 37 H 0.183 0.817 38 H 0.177 0.823 39 H 0.183 0.817 40 H 0.174 0.826 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.652 -8.114 -15.690 18.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.204 4.204 3 C 0.010 3.990 4 N -0.339 5.339 5 C 0.160 3.840 6 C -0.578 4.578 7 H 0.073 0.927 8 C -0.189 4.189 9 N -0.567 5.567 10 Si 0.789 3.211 11 H -0.191 1.191 12 H -0.210 1.210 13 H -0.197 1.197 14 C 0.398 3.602 15 O -0.496 6.496 16 N -0.324 5.324 17 C 0.044 3.956 18 C -0.091 4.091 19 C -0.123 4.123 20 C 0.059 3.941 21 O -0.189 6.189 22 C 0.357 3.643 23 O -0.406 6.406 24 C -0.276 4.276 25 C 0.001 3.999 26 C -0.152 4.152 27 C -0.097 4.097 28 H 0.117 0.883 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.100 0.900 32 H 0.121 0.879 33 H 0.042 0.958 34 H 0.018 0.982 35 H 0.075 0.925 36 H 0.263 0.737 37 H 0.201 0.799 38 H 0.194 0.806 39 H 0.201 0.799 40 H 0.192 0.808 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.543 -8.420 -15.002 17.793 hybrid contribution -0.159 1.172 0.589 1.322 sum 4.384 -7.248 -14.412 16.717 Atomic orbital electron populations 1.24059 0.95664 1.02851 0.97972 1.23326 0.96778 0.98193 1.02137 1.20808 0.92828 0.96721 0.88593 1.47400 1.09820 1.62699 1.13957 1.18629 0.93841 0.92401 0.79157 1.21713 1.40409 0.94451 1.01276 0.92675 1.25786 0.94785 1.03360 0.94949 1.70044 1.42901 1.37981 1.05798 0.85473 0.78810 0.79554 0.77305 1.19087 1.20982 1.19677 1.16083 0.82750 0.78500 0.82900 1.90860 1.53949 1.63281 1.41467 1.42573 1.15833 1.62812 1.11193 1.17714 0.83872 0.94641 0.99340 1.21237 0.98159 0.91582 0.98161 1.20637 0.88594 1.02310 1.00713 1.19386 0.82857 0.93685 0.98134 1.83467 1.16757 1.56811 1.61882 1.19621 0.81698 0.83825 0.79148 1.90936 1.22881 1.61425 1.65310 1.22631 1.01384 0.98974 1.04567 1.23184 0.89587 0.95764 0.91331 1.19127 0.95253 0.98897 1.01909 1.21317 0.89687 0.99760 0.98913 0.88324 0.86709 0.86680 0.89978 0.87909 0.95759 0.98191 0.92498 0.73651 0.79927 0.80601 0.79935 0.80843 0.84876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.43 14.32 67.78 0.97 -2.46 16 2 C -0.19 -4.15 9.85 25.65 0.25 -3.90 16 3 C 0.13 3.53 5.65 85.64 0.48 4.01 16 4 N -0.61 -23.15 2.44 -848.58 -2.07 -25.22 16 5 C 0.28 14.20 5.16 85.63 0.44 14.64 16 6 C -0.54 -29.32 9.39 25.60 0.24 -29.08 16 7 H 0.06 2.95 7.81 -2.91 -0.02 2.93 16 8 C 0.01 0.57 5.46 84.66 0.46 1.03 16 9 N -0.93 -54.11 13.29 21.45 0.28 -53.83 16 10 Si 0.96 43.07 29.54 68.60 2.03 45.10 16 11 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 14 C 0.70 26.13 8.12 179.06 1.45 27.58 16 15 O -0.62 -29.02 13.35 -4.00 -0.05 -29.08 16 16 N -0.67 -16.90 5.22 -317.16 -1.66 -18.55 16 17 C 0.14 3.31 6.30 38.09 0.24 3.55 16 18 C -0.07 -1.09 9.93 22.43 0.22 -0.87 16 19 C -0.10 -1.70 9.99 22.33 0.22 -1.47 16 20 C 0.10 2.37 6.76 23.01 0.16 2.52 16 21 O -0.28 -7.21 9.82 14.46 0.14 -7.07 16 22 C 0.51 13.85 7.89 68.54 0.54 14.39 16 23 O -0.51 -17.14 17.91 19.03 0.34 -16.80 16 24 C -0.26 -5.49 9.94 22.40 0.22 -5.26 16 25 C 0.02 0.42 10.13 23.87 0.24 0.66 16 26 C -0.15 -3.67 5.87 -20.14 -0.12 -3.79 16 27 C -0.08 -2.10 8.47 22.65 0.19 -1.91 16 28 H 0.10 2.04 7.84 -2.91 -0.02 2.02 16 29 H 0.11 1.90 8.06 -2.91 -0.02 1.88 16 30 H 0.12 2.36 8.06 -2.91 -0.02 2.33 16 31 H 0.08 2.37 7.72 -2.39 -0.02 2.35 16 32 H 0.10 1.93 6.30 -2.38 -0.02 1.92 16 33 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 34 H 0.00 0.00 7.42 -2.39 -0.02 -0.02 16 35 H 0.27 14.64 8.31 -92.71 -0.77 13.86 16 36 H 0.42 7.26 6.52 -92.71 -0.60 6.66 16 37 H 0.18 1.30 8.06 -2.91 -0.02 1.27 16 38 H 0.18 1.80 8.06 -2.91 -0.02 1.78 16 39 H 0.18 3.02 8.06 -2.91 -0.02 3.00 16 40 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 41 H 0.13 4.51 6.21 -2.91 -0.02 4.50 16 Total: -1.00 -76.53 360.65 5.71 -70.82 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.47 Total: 14.99 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: 6.23 Total: 19.64 kcal Atomic # 7 Polarization: -94.16 SS G_CDS: -3.44 Total: -97.60 kcal Atomic # 8 Polarization: -53.38 SS G_CDS: 0.43 Total: -52.95 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -76.53 5.71 -70.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813819111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.315 kcal (2) G-P(sol) polarization free energy of solvation -76.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds