Wall clock time and date at job start Tue Mar 31 2020 16:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47663 * 2 1 4 4 N 1.46510 * 109.47399 * 120.00380 * 2 1 3 5 5 C 1.34771 * 119.99485 * 274.99896 * 4 2 1 6 6 O 1.21590 * 120.00271 * 359.97438 * 5 4 2 7 7 C 1.47535 * 119.99633 * 179.97438 * 5 4 2 8 8 C 1.39666 * 120.19998 * 0.02562 * 7 5 4 9 9 C 1.37826 * 119.92249 * 179.97438 * 8 7 5 10 10 C 1.38571 * 120.32203 * 359.97438 * 9 8 7 11 11 C 1.38025 * 120.40291 * 0.02562 * 10 9 8 12 12 C 1.38830 * 120.07198 * 359.97438 * 11 10 9 13 13 O 1.35518 * 120.16239 * 179.97438 * 12 11 10 14 14 C 1.34820 * 117.00070 * 354.39490 * 13 12 11 15 15 H 1.07997 * 119.99738 * 5.05806 * 14 13 12 16 16 C 1.38700 * 120.00183 * 185.04813 * 14 13 12 17 17 N 1.31520 * 119.99867 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99727 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47267 * 90.00148 * 18 16 14 20 20 H 1.48505 * 109.47067 * 209.99461 * 18 16 14 21 21 H 1.48498 * 109.47301 * 329.99404 * 18 16 14 22 22 C 1.50703 * 109.46815 * 239.99924 * 2 1 3 23 23 C 1.38830 * 120.75790 * 279.72425 * 22 2 1 24 24 C 1.38048 * 119.28991 * 179.73021 * 23 22 2 25 25 N 1.31967 * 120.83348 * 0.55669 * 24 23 22 26 26 C 1.32251 * 121.64705 * 359.71277 * 25 24 23 27 27 O 1.35669 * 119.68656 * 180.02562 * 26 25 24 28 28 C 1.38375 * 120.75731 * 100.00618 * 22 2 1 29 29 H 1.09002 * 109.47537 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46646 * 299.99919 * 1 2 3 31 31 H 1.08997 * 109.47147 * 59.99491 * 1 2 3 32 32 H 0.96994 * 119.99885 * 94.99107 * 4 2 1 33 33 H 1.08003 * 120.03707 * 359.97438 * 8 7 5 34 34 H 1.08001 * 119.83995 * 180.02562 * 9 8 7 35 35 H 1.08003 * 119.80208 * 180.27644 * 10 9 8 36 36 H 1.08003 * 119.96586 * 180.02562 * 11 10 9 37 37 H 0.97001 * 119.99390 * 180.02562 * 17 16 14 38 38 H 1.08004 * 120.35594 * 359.97284 * 23 22 2 39 39 H 1.07998 * 119.58238 * 180.27338 * 24 23 22 40 40 H 0.96706 * 114.00318 * 269.98567 * 27 26 25 41 41 H 1.08005 * 120.44558 * 0.02562 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1471 -0.0184 2.3571 6 8 1.8583 1.1615 2.4116 7 6 2.6384 -0.7140 3.5618 8 6 2.9718 -2.0691 3.5037 9 6 3.4307 -2.7131 4.6325 10 6 3.5639 -2.0227 5.8265 11 6 3.2383 -0.6833 5.8990 12 6 2.7745 -0.0182 4.7721 13 8 2.4538 1.2967 4.8414 14 6 2.4963 1.8738 6.0591 15 1 2.8548 1.3135 6.9099 16 6 2.0798 3.1871 6.2191 17 7 2.1218 3.7501 7.4069 18 14 1.4593 4.1559 4.7474 19 1 -0.0078 3.9683 4.6141 20 1 1.7582 5.5975 4.9421 21 1 2.1341 3.6724 3.5162 22 6 2.0322 -0.7105 -1.2305 23 6 2.0788 -2.0971 -1.2804 24 6 2.5391 -2.7166 -2.4250 25 7 2.9432 -2.0075 -3.4621 26 6 2.9190 -0.6853 -3.4505 27 8 3.3434 0.0041 -4.5392 28 6 2.4628 0.0045 -2.3342 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 2.2489 -1.6318 1.1526 33 1 2.8701 -2.6115 2.5754 34 1 3.6885 -3.7609 4.5860 35 1 3.9286 -2.5346 6.7048 36 1 3.3453 -0.1519 6.8332 37 1 1.8301 4.6685 7.5188 38 1 1.7548 -2.6849 -0.4343 39 1 2.5732 -3.7950 -2.4706 40 1 4.2868 0.2163 -4.5272 41 1 2.4449 1.0844 -2.3278 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818031015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:25 Heat of formation + Delta-G solvation = -33.007747 kcal Electronic energy + Delta-G solvation = -27070.664203 eV Core-core repulsion = 23110.139492 eV Total energy + Delta-G solvation = -3960.524711 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.94093 -39.86001 -38.58302 -37.44214 -36.59591 -35.62717 -32.64222 -32.49149 -30.94198 -30.55041 -29.42987 -29.24378 -25.42288 -24.83295 -23.87742 -23.34902 -21.79740 -21.05432 -20.14218 -18.89254 -17.96365 -17.91453 -17.22462 -16.72451 -16.11212 -15.89932 -15.56132 -14.89836 -14.82161 -14.60011 -14.35739 -14.17488 -13.88936 -13.79971 -13.63716 -13.27581 -13.02336 -12.65143 -12.45469 -12.40776 -12.22267 -12.08896 -12.05307 -11.49053 -11.35346 -11.30666 -10.89097 -10.76604 -10.09866 -10.02232 -9.79571 -9.67938 -9.27506 -9.14449 -8.94678 -8.91611 -8.45090 -7.53945 -6.51699 -4.16936 0.66594 0.82661 1.50356 2.13055 3.06796 3.27727 3.33900 3.41798 3.47466 3.49241 3.61622 4.15761 4.30751 4.38386 4.45654 4.67016 4.68271 4.75156 4.92944 5.04062 5.13599 5.22265 5.28245 5.30860 5.35091 5.45719 5.58164 5.63990 5.71280 5.83411 5.97775 6.01487 6.10374 6.19584 6.31346 6.48290 6.64193 6.76470 6.94737 7.09267 7.14525 7.42258 7.58135 7.61731 7.81156 7.90075 8.74437 8.83787 9.46035 10.53348 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013700 B = 0.003480 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.369379 B = 8043.042241 C = 9582.263144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.183 3.817 3 H 0.102 0.898 4 N -0.737 5.737 5 C 0.564 3.436 6 O -0.515 6.515 7 C -0.228 4.228 8 C -0.040 4.040 9 C -0.221 4.221 10 C -0.050 4.050 11 C -0.226 4.226 12 C 0.202 3.798 13 O -0.165 6.165 14 C -0.397 4.397 15 H 0.109 0.891 16 C 0.072 3.928 17 N -0.868 5.868 18 Si 0.901 3.099 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.239 1.239 22 C -0.023 4.023 23 C -0.179 4.179 24 C 0.128 3.872 25 N -0.507 5.507 26 C 0.313 3.687 27 O -0.483 6.483 28 C -0.175 4.175 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.394 0.606 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.139 0.861 37 H 0.282 0.718 38 H 0.139 0.861 39 H 0.163 0.837 40 H 0.402 0.598 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.285 -12.565 -16.090 20.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.078 3.922 3 H 0.120 0.880 4 N -0.393 5.393 5 C 0.354 3.646 6 O -0.390 6.390 7 C -0.233 4.233 8 C -0.059 4.059 9 C -0.240 4.240 10 C -0.068 4.068 11 C -0.245 4.245 12 C 0.144 3.856 13 O -0.065 6.065 14 C -0.472 4.472 15 H 0.126 0.874 16 C -0.134 4.134 17 N -0.504 5.504 18 Si 0.726 3.274 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.161 1.161 22 C -0.032 4.032 23 C -0.199 4.199 24 C -0.029 4.029 25 N -0.226 5.226 26 C 0.134 3.866 27 O -0.290 6.290 28 C -0.196 4.196 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.230 0.770 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.156 0.844 37 H 0.092 0.908 38 H 0.157 0.843 39 H 0.180 0.820 40 H 0.259 0.741 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.696 -11.654 -17.009 20.630 hybrid contribution 0.082 0.377 0.499 0.631 sum 0.779 -11.278 -16.510 20.009 Atomic orbital electron populations 1.22175 0.93725 1.02555 1.03228 1.19709 0.94520 0.97018 0.80932 0.88025 1.46004 1.70333 1.13782 1.09156 1.18203 0.77387 0.86554 0.82408 1.90861 1.48762 1.15102 1.84313 1.18797 1.17478 0.94329 0.92680 1.20738 0.95494 0.92116 0.97569 1.20538 1.10249 0.99653 0.93539 1.20976 0.95150 0.93659 0.97063 1.21296 1.08033 0.95486 0.99722 1.19008 0.90693 0.83947 0.91976 1.83772 1.72722 1.17456 1.32510 1.20930 1.44708 0.97603 0.83946 0.87421 1.24502 0.95205 0.95907 0.97771 1.69639 1.44013 1.14715 1.22017 0.86191 0.80174 0.77528 0.83552 1.19917 1.21230 1.16149 1.20383 0.93832 0.93857 0.95120 1.21985 1.02740 0.94628 1.00517 1.22501 0.93049 1.00004 0.87340 1.67175 1.17650 1.07940 1.29848 1.19123 0.95089 0.86879 0.85492 1.84775 1.30789 1.72883 1.40570 1.22007 1.02933 1.02130 0.92555 0.92194 0.90716 0.91661 0.77005 0.86991 0.86965 0.86789 0.84387 0.90776 0.84292 0.82009 0.74069 0.83833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.47 37.15 0.35 -1.47 16 2 C 0.18 2.23 2.81 -69.08 -0.19 2.04 16 3 H 0.10 1.42 7.48 -51.93 -0.39 1.04 16 4 N -0.74 -9.96 4.99 -55.97 -0.28 -10.24 16 5 C 0.56 10.70 7.73 -12.47 -0.10 10.61 16 6 O -0.51 -12.08 14.83 -16.57 -0.25 -12.33 16 7 C -0.23 -4.40 5.89 -104.81 -0.62 -5.02 16 8 C -0.04 -0.61 9.53 -39.20 -0.37 -0.98 16 9 C -0.22 -3.24 10.02 -39.61 -0.40 -3.64 16 10 C -0.05 -0.82 10.03 -39.54 -0.40 -1.22 16 11 C -0.23 -4.62 9.16 -39.44 -0.36 -4.98 16 12 C 0.20 4.60 6.66 -38.60 -0.26 4.35 16 13 O -0.16 -4.41 6.67 -21.06 -0.14 -4.55 16 14 C -0.40 -11.13 9.95 30.90 0.31 -10.82 16 15 H 0.11 3.01 5.44 -52.49 -0.29 2.72 16 16 C 0.07 2.03 5.49 -17.51 -0.10 1.94 16 17 N -0.87 -24.89 13.96 55.48 0.77 -24.11 16 18 Si 0.90 22.73 28.62 -169.99 -4.86 17.87 16 19 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.24 -6.32 7.11 56.52 0.40 -5.92 16 22 C -0.02 -0.24 4.98 -104.35 -0.52 -0.76 16 23 C -0.18 -1.51 9.15 -39.43 -0.36 -1.87 16 24 C 0.13 1.10 11.18 -17.56 -0.20 0.91 16 25 N -0.51 -5.61 10.39 -13.33 -0.14 -5.75 16 26 C 0.31 3.33 7.74 -17.12 -0.13 3.20 16 27 O -0.48 -4.50 13.56 -18.71 -0.25 -4.76 16 28 C -0.17 -1.77 9.71 -39.28 -0.38 -2.15 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.39 4.16 4.96 -40.82 -0.20 3.95 16 33 H 0.11 1.22 6.40 -52.48 -0.34 0.88 16 34 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 36 H 0.14 2.94 5.64 -52.48 -0.30 2.65 16 37 H 0.28 7.48 8.31 -40.82 -0.34 7.15 16 38 H 0.14 0.88 6.99 -52.48 -0.37 0.51 16 39 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.40 1.77 9.06 45.56 0.41 2.18 16 41 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 354.77 15.07 5.35 5.35 Total: -1.00 -34.73 354.77 -7.08 -41.81 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -3.56 Total: 6.58 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -3.72 Total: -9.87 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.36 Total: -40.10 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.64 Total: -21.63 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.86 Total: 17.87 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.73 -7.08 -41.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818031015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.800 kcal (2) G-P(sol) polarization free energy of solvation -34.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds