Wall clock time and date at job start Tue Mar 31 2020 16:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47663 * 2 1 4 4 N 1.46510 * 109.47399 * 120.00380 * 2 1 3 5 5 C 1.34771 * 119.99485 * 274.99896 * 4 2 1 6 6 O 1.21590 * 120.00271 * 359.97438 * 5 4 2 7 7 C 1.47535 * 119.99633 * 179.97438 * 5 4 2 8 8 C 1.39666 * 120.19998 * 0.02562 * 7 5 4 9 9 C 1.37826 * 119.92249 * 179.97438 * 8 7 5 10 10 C 1.38571 * 120.32203 * 359.97438 * 9 8 7 11 11 C 1.38025 * 120.40291 * 0.02562 * 10 9 8 12 12 C 1.38830 * 120.07198 * 359.97438 * 11 10 9 13 13 O 1.35518 * 120.16239 * 179.97438 * 12 11 10 14 14 C 1.34820 * 117.00070 * 354.39490 * 13 12 11 15 15 H 1.07997 * 119.99738 * 5.05806 * 14 13 12 16 16 C 1.38700 * 120.00183 * 185.04813 * 14 13 12 17 17 N 1.31520 * 119.99867 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99727 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47267 * 90.00148 * 18 16 14 20 20 H 1.48505 * 109.47067 * 209.99461 * 18 16 14 21 21 H 1.48498 * 109.47301 * 329.99404 * 18 16 14 22 22 C 1.50703 * 109.46815 * 239.99924 * 2 1 3 23 23 C 1.38830 * 120.75790 * 279.72425 * 22 2 1 24 24 C 1.38048 * 119.28991 * 179.73021 * 23 22 2 25 25 N 1.31967 * 120.83348 * 0.55669 * 24 23 22 26 26 C 1.32251 * 121.64705 * 359.71277 * 25 24 23 27 27 O 1.35669 * 119.68656 * 180.02562 * 26 25 24 28 28 C 1.38375 * 120.75731 * 100.00618 * 22 2 1 29 29 H 1.09002 * 109.47537 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46646 * 299.99919 * 1 2 3 31 31 H 1.08997 * 109.47147 * 59.99491 * 1 2 3 32 32 H 0.96994 * 119.99885 * 94.99107 * 4 2 1 33 33 H 1.08003 * 120.03707 * 359.97438 * 8 7 5 34 34 H 1.08001 * 119.83995 * 180.02562 * 9 8 7 35 35 H 1.08003 * 119.80208 * 180.27644 * 10 9 8 36 36 H 1.08003 * 119.96586 * 180.02562 * 11 10 9 37 37 H 0.97001 * 119.99390 * 180.02562 * 17 16 14 38 38 H 1.08004 * 120.35594 * 359.97284 * 23 22 2 39 39 H 1.07998 * 119.58238 * 180.27338 * 24 23 22 40 40 H 0.96706 * 114.00318 * 269.98567 * 27 26 25 41 41 H 1.08005 * 120.44558 * 0.02562 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1471 -0.0184 2.3571 6 8 1.8583 1.1615 2.4116 7 6 2.6384 -0.7140 3.5618 8 6 2.9718 -2.0691 3.5037 9 6 3.4307 -2.7131 4.6325 10 6 3.5639 -2.0227 5.8265 11 6 3.2383 -0.6833 5.8990 12 6 2.7745 -0.0182 4.7721 13 8 2.4538 1.2967 4.8414 14 6 2.4963 1.8738 6.0591 15 1 2.8548 1.3135 6.9099 16 6 2.0798 3.1871 6.2191 17 7 2.1218 3.7501 7.4069 18 14 1.4593 4.1559 4.7474 19 1 -0.0078 3.9683 4.6141 20 1 1.7582 5.5975 4.9421 21 1 2.1341 3.6724 3.5162 22 6 2.0322 -0.7105 -1.2305 23 6 2.0788 -2.0971 -1.2804 24 6 2.5391 -2.7166 -2.4250 25 7 2.9432 -2.0075 -3.4621 26 6 2.9190 -0.6853 -3.4505 27 8 3.3434 0.0041 -4.5392 28 6 2.4628 0.0045 -2.3342 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 2.2489 -1.6318 1.1526 33 1 2.8701 -2.6115 2.5754 34 1 3.6885 -3.7609 4.5860 35 1 3.9286 -2.5346 6.7048 36 1 3.3453 -0.1519 6.8332 37 1 1.8301 4.6685 7.5188 38 1 1.7548 -2.6849 -0.4343 39 1 2.5732 -3.7950 -2.4706 40 1 4.2868 0.2163 -4.5272 41 1 2.4449 1.0844 -2.3278 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818031015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:24 Heat of formation + Delta-G solvation = -60.268121 kcal Electronic energy + Delta-G solvation = -27071.846301 eV Core-core repulsion = 23110.139492 eV Total energy + Delta-G solvation = -3961.706809 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.80034 -41.26279 -40.02908 -38.30525 -38.12009 -36.73560 -34.52231 -33.77562 -32.14958 -31.24413 -30.78816 -30.53176 -27.31264 -25.86484 -24.70827 -24.49537 -23.15347 -22.24993 -21.49678 -19.92618 -19.79646 -19.13657 -18.13861 -18.07553 -17.03516 -16.90940 -16.59563 -16.34651 -16.17920 -15.95361 -15.68710 -15.50449 -15.42941 -15.24978 -14.61948 -14.52570 -14.24185 -14.11820 -14.02181 -13.76801 -13.18439 -13.12953 -13.03454 -12.83458 -12.74900 -12.58537 -12.40769 -12.26018 -12.02410 -11.52951 -10.97147 -10.89304 -10.68252 -10.53618 -10.18965 -9.94589 -9.84119 -9.14120 -8.57926 -6.26745 -0.01839 0.04875 0.08963 0.66176 1.25041 1.30002 1.57811 2.01713 2.08557 2.29001 2.55816 2.76297 2.78438 3.02500 3.17094 3.30628 3.73185 3.85275 4.00117 4.03551 4.06114 4.13696 4.21337 4.27981 4.48878 4.49977 4.55903 4.63212 4.70759 4.79854 4.84552 4.85948 5.07019 5.13488 5.18881 5.29610 5.46736 5.48495 5.54817 5.62803 5.70538 5.84101 6.16525 6.58386 6.58838 6.79191 6.91305 7.36123 7.58853 8.52588 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013700 B = 0.003480 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.369379 B = 8043.042241 C = 9582.263144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.185 3.815 3 H 0.076 0.924 4 N -0.709 5.709 5 C 0.560 3.440 6 O -0.568 6.568 7 C -0.233 4.233 8 C -0.029 4.029 9 C -0.188 4.188 10 C -0.043 4.043 11 C -0.252 4.252 12 C 0.162 3.838 13 O -0.209 6.209 14 C -0.402 4.402 15 H 0.091 0.909 16 C 0.025 3.975 17 N -0.912 5.912 18 Si 0.956 3.044 19 H -0.276 1.276 20 H -0.268 1.268 21 H -0.264 1.264 22 C -0.029 4.029 23 C -0.170 4.170 24 C 0.130 3.870 25 N -0.530 5.530 26 C 0.303 3.697 27 O -0.495 6.495 28 C -0.184 4.184 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.078 0.922 32 H 0.413 0.587 33 H 0.168 0.832 34 H 0.168 0.832 35 H 0.149 0.851 36 H 0.113 0.887 37 H 0.285 0.715 38 H 0.169 0.831 39 H 0.197 0.803 40 H 0.419 0.581 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.756 -17.566 -18.442 25.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.080 3.920 3 H 0.094 0.906 4 N -0.366 5.366 5 C 0.350 3.650 6 O -0.447 6.447 7 C -0.238 4.238 8 C -0.047 4.047 9 C -0.207 4.207 10 C -0.061 4.061 11 C -0.271 4.271 12 C 0.109 3.891 13 O -0.113 6.113 14 C -0.478 4.478 15 H 0.109 0.891 16 C -0.175 4.175 17 N -0.552 5.552 18 Si 0.780 3.220 19 H -0.202 1.202 20 H -0.192 1.192 21 H -0.189 1.189 22 C -0.037 4.037 23 C -0.190 4.190 24 C -0.027 4.027 25 N -0.250 5.250 26 C 0.125 3.875 27 O -0.305 6.305 28 C -0.205 4.205 29 H 0.101 0.899 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.252 0.748 33 H 0.185 0.815 34 H 0.185 0.815 35 H 0.167 0.833 36 H 0.131 0.869 37 H 0.095 0.905 38 H 0.186 0.814 39 H 0.213 0.787 40 H 0.280 0.720 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.197 -16.739 -19.410 25.659 hybrid contribution 0.058 1.394 1.021 1.728 sum 1.255 -15.345 -18.389 23.984 Atomic orbital electron populations 1.22122 0.93050 1.03695 1.02336 1.19667 0.95018 0.96075 0.81204 0.90623 1.45711 1.68547 1.14366 1.07930 1.18341 0.76970 0.86024 0.83697 1.90853 1.51051 1.17579 1.85260 1.19258 1.16787 0.96180 0.91565 1.21363 0.93108 0.89975 1.00280 1.21245 1.05796 1.01816 0.91802 1.21451 0.93305 0.91725 0.99599 1.21333 1.09843 0.97596 0.98360 1.19771 0.91551 0.83485 0.94331 1.83763 1.76661 1.19691 1.31181 1.20887 1.44527 0.97809 0.84606 0.89126 1.25048 0.96169 0.96786 0.99477 1.69688 1.47192 1.15351 1.22998 0.85399 0.79059 0.77338 0.80171 1.20153 1.19238 1.18871 1.20161 0.94901 0.94760 0.93915 1.22253 1.01642 0.93655 1.01449 1.23095 0.91630 1.01437 0.86516 1.67239 1.18490 1.08100 1.31142 1.19217 0.95451 0.87081 0.85721 1.84723 1.32594 1.72858 1.40329 1.22057 1.03281 1.02399 0.92813 0.89938 0.93869 0.90353 0.74769 0.81455 0.81466 0.83284 0.86884 0.90481 0.81369 0.78660 0.71962 0.83778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.47 71.98 0.68 -2.65 16 2 C 0.19 4.26 2.81 44.24 0.12 4.38 16 3 H 0.08 2.18 7.48 -2.39 -0.02 2.16 16 4 N -0.71 -17.32 4.99 -449.26 -2.24 -19.56 16 5 C 0.56 20.94 7.73 86.70 0.67 21.61 16 6 O -0.57 -27.83 14.83 16.90 0.25 -27.58 16 7 C -0.23 -8.64 5.89 -19.99 -0.12 -8.76 16 8 C -0.03 -0.70 9.53 22.52 0.21 -0.49 16 9 C -0.19 -4.25 10.02 22.25 0.22 -4.03 16 10 C -0.04 -1.24 10.03 22.30 0.22 -1.02 16 11 C -0.25 -10.42 9.16 22.36 0.20 -10.22 16 12 C 0.16 7.59 6.66 22.91 0.15 7.74 16 13 O -0.21 -11.93 6.67 0.80 0.01 -11.92 16 14 C -0.40 -24.30 9.95 67.93 0.68 -23.63 16 15 H 0.09 5.55 5.44 -2.91 -0.02 5.53 16 16 C 0.03 1.53 5.49 84.85 0.47 2.00 16 17 N -0.91 -55.58 13.96 21.62 0.30 -55.28 16 18 Si 0.96 50.33 28.62 68.60 1.96 52.30 16 19 H -0.28 -14.31 7.11 99.48 0.71 -13.60 16 20 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 21 H -0.26 -14.86 7.11 99.48 0.71 -14.15 16 22 C -0.03 -0.51 4.98 -19.69 -0.10 -0.61 16 23 C -0.17 -2.09 9.15 22.37 0.20 -1.89 16 24 C 0.13 1.67 11.18 84.63 0.95 2.62 16 25 N -0.53 -10.22 10.39 -308.95 -3.21 -13.43 16 26 C 0.30 5.94 7.74 84.79 0.66 6.60 16 27 O -0.49 -8.65 13.56 -89.86 -1.22 -9.87 16 28 C -0.18 -3.47 9.71 22.47 0.22 -3.26 16 29 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 32 H 0.41 6.53 4.96 -92.71 -0.46 6.07 16 33 H 0.17 2.22 6.40 -2.91 -0.02 2.20 16 34 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 35 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 36 H 0.11 5.18 5.64 -2.91 -0.02 5.16 16 37 H 0.29 16.02 8.31 -92.71 -0.77 15.25 16 38 H 0.17 1.00 6.99 -2.91 -0.02 0.98 16 39 H 0.20 1.08 8.06 -2.91 -0.02 1.06 16 40 H 0.42 3.24 9.06 -74.05 -0.67 2.57 16 41 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -85.16 354.77 1.28 -83.88 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -0.02 Total: 13.06 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: 5.45 Total: -11.60 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -5.15 Total: -88.27 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: -0.96 Total: -49.37 kcal Atomic # 14 Polarization: 50.33 SS G_CDS: 1.96 Total: 52.30 kcal Total: -85.16 1.28 -83.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818031015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.612 kcal (2) G-P(sol) polarization free energy of solvation -85.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds