Wall clock time and date at job start Tue Mar 31 2020 15:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39596 * 120.10612 * 184.95271 * 3 2 1 5 5 C 1.38010 * 120.01125 * 180.02562 * 4 3 2 6 6 C 1.38227 * 120.22117 * 359.67933 * 5 4 3 7 7 C 1.39003 * 120.20975 * 0.59903 * 6 5 4 8 8 N 1.39743 * 120.00655 * 179.70169 * 7 6 5 9 9 C 1.34772 * 120.00289 * 146.32938 * 8 7 6 10 10 O 1.21377 * 119.99967 * 354.72192 * 9 8 7 11 11 C 1.49350 * 120.00203 * 174.71694 * 9 8 7 12 12 O 1.21360 * 120.00082 * 0.02562 * 11 9 8 13 13 N 1.34781 * 120.00263 * 179.97438 * 11 9 8 14 14 C 1.47426 * 125.64401 * 359.96031 * 13 11 9 15 15 C 1.54909 * 104.83062 * 204.16079 * 14 13 11 16 16 C 1.55157 * 101.58346 * 322.99738 * 15 14 13 17 17 O 1.42903 * 110.71782 * 277.13330 * 16 15 14 18 18 C 1.50696 * 110.87363 * 153.93462 * 16 15 14 19 19 H 1.08004 * 120.00265 * 2.54857 * 18 16 15 20 20 C 1.37873 * 119.99932 * 182.54216 * 18 16 15 21 21 N 1.31513 * 120.00360 * 0.02562 * 20 18 16 22 22 Si 1.86809 * 119.99843 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47123 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46815 * 120.00286 * 22 20 18 25 25 H 1.48500 * 109.47216 * 240.00110 * 22 20 18 26 26 C 1.47016 * 125.65122 * 180.02562 * 13 11 9 27 27 C 1.38704 * 119.98552 * 359.42166 * 7 6 5 28 28 H 4.52053 * 14.03226 * 0.02562 * 4 2 1 29 29 H 1.08003 * 119.99666 * 359.97438 * 4 3 2 30 30 H 1.08004 * 119.89029 * 179.97438 * 5 4 3 31 31 H 1.08004 * 119.89281 * 180.29791 * 6 5 4 32 32 H 0.97000 * 119.99804 * 326.32636 * 8 7 6 33 33 H 1.08993 * 110.36828 * 323.00181 * 14 13 11 34 34 H 1.09002 * 110.36400 * 85.33060 * 14 13 11 35 35 H 1.09000 * 111.00632 * 204.91750 * 15 14 13 36 36 H 1.09001 * 111.00379 * 81.07178 * 15 14 13 37 37 H 0.96702 * 114.00194 * 174.97574 * 17 16 15 38 38 H 0.97002 * 120.00129 * 179.97438 * 21 20 18 39 39 H 1.09004 * 109.88623 * 59.48366 * 26 13 11 40 40 H 1.09011 * 109.87845 * 298.32257 * 26 13 11 41 41 H 1.08000 * 120.10821 * 180.25139 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3057 1.2041 0.1043 5 6 4.6858 1.2025 0.1035 6 6 5.3801 0.0112 0.0064 7 6 4.6927 -1.1920 -0.1036 8 7 5.3990 -2.3933 -0.2078 9 6 4.8988 -3.5188 0.3395 10 8 3.8843 -3.4714 1.0042 11 6 5.5926 -4.8243 0.1280 12 8 6.6072 -4.8716 -0.5363 13 7 5.0927 -5.9497 0.6757 14 6 3.8752 -6.0353 1.5026 15 6 4.0687 -7.3091 2.3626 16 6 4.7788 -8.2569 1.3602 17 8 3.8262 -8.9004 0.5113 18 6 5.6169 -9.2768 2.0871 19 1 5.6251 -9.2984 3.1669 20 6 6.3731 -10.1824 1.3737 21 7 6.3634 -10.1560 0.0589 22 14 7.4125 -11.4463 2.2749 23 1 7.2506 -11.2665 3.7400 24 1 6.9727 -12.8122 1.8926 25 1 8.8401 -11.2652 1.9083 26 6 5.6719 -7.2950 0.5487 27 6 3.3057 -1.2004 -0.1042 28 1 -1.0500 -0.0011 0.0004 29 1 2.7669 2.1367 0.1847 30 1 5.2251 2.1347 0.1839 31 1 6.4601 0.0157 0.0112 32 1 6.2492 -2.4172 -0.6741 33 1 3.7876 -5.1563 2.1410 34 1 2.9932 -6.1352 0.8699 35 1 3.1083 -7.7193 2.6749 36 1 4.7037 -7.1057 3.2249 37 1 4.2225 -9.4443 -0.1832 38 1 6.8958 -10.7929 -0.4430 39 1 6.6852 -7.3019 0.9505 40 1 5.6843 -7.5958 -0.4990 41 1 2.7697 -2.1345 -0.1855 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832792894.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:27 Heat of formation + Delta-G solvation = -22.687386 kcal Electronic energy + Delta-G solvation = -26994.931940 eV Core-core repulsion = 23034.854754 eV Total energy + Delta-G solvation = -3960.077186 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.03701 -39.53906 -38.30651 -37.33613 -35.46272 -34.30448 -33.59525 -32.25869 -30.62851 -30.24461 -29.88003 -28.00474 -26.07096 -24.38874 -23.79775 -22.80608 -21.61602 -19.95606 -19.64559 -19.21964 -17.45734 -17.25334 -17.02893 -16.65253 -16.04981 -15.94844 -15.49794 -15.04630 -14.82340 -14.55976 -14.32324 -14.17364 -13.75329 -13.41182 -13.10534 -13.01450 -12.91891 -12.49112 -12.18684 -11.97073 -11.78876 -11.57833 -11.54431 -11.16064 -11.11304 -10.83544 -10.72254 -10.65631 -10.49842 -10.48027 -10.21856 -9.43078 -9.27375 -8.87086 -8.71823 -8.41376 -8.38457 -8.11844 -6.34704 -4.42862 0.63209 0.98102 1.66990 2.35529 2.56843 2.77837 3.17142 3.26239 3.29863 3.40028 3.67820 3.78602 4.03337 4.22938 4.49386 4.65186 4.82064 4.89852 4.93575 5.19245 5.24734 5.39335 5.43344 5.76435 5.80782 5.83054 5.93863 5.98509 6.02690 6.13147 6.20618 6.28097 6.44281 6.64503 6.70484 6.72609 6.76485 6.98059 7.12931 7.25921 7.31586 7.66428 7.67909 7.87248 7.96362 8.26310 8.61174 9.24798 9.34423 10.73411 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.023901 B = 0.002644 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.206557 B =10588.102076 C =11295.627950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.148 4.148 3 C 0.027 3.973 4 C -0.113 4.113 5 C -0.099 4.099 6 C -0.133 4.133 7 C 0.152 3.848 8 N -0.651 5.651 9 C 0.512 3.488 10 O -0.494 6.494 11 C 0.508 3.492 12 O -0.534 6.534 13 N -0.571 5.571 14 C 0.096 3.904 15 C -0.120 4.120 16 C 0.248 3.752 17 O -0.583 6.583 18 C -0.536 4.536 19 H 0.069 0.931 20 C 0.070 3.930 21 N -0.896 5.896 22 Si 0.905 3.095 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.282 1.282 26 C 0.098 3.902 27 C -0.097 4.097 28 H 0.225 0.775 29 H 0.127 0.873 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.424 0.576 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.384 0.616 38 H 0.270 0.730 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.758 19.985 -1.001 20.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.148 4.148 3 C 0.027 3.973 4 C -0.131 4.131 5 C -0.117 4.117 6 C -0.154 4.154 7 C 0.057 3.943 8 N -0.299 5.299 9 C 0.295 3.705 10 O -0.366 6.366 11 C 0.290 3.710 12 O -0.413 6.413 13 N -0.303 5.303 14 C -0.026 4.026 15 C -0.158 4.158 16 C 0.208 3.792 17 O -0.392 6.392 18 C -0.574 4.574 19 H 0.087 0.913 20 C -0.133 4.133 21 N -0.535 5.535 22 Si 0.732 3.268 23 H -0.195 1.195 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.023 4.023 27 C -0.117 4.117 28 H 0.242 0.758 29 H 0.145 0.855 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.262 0.738 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.234 0.766 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.247 20.150 -0.675 20.833 hybrid contribution 1.313 -1.026 -0.281 1.690 sum -3.934 19.124 -0.955 19.548 Atomic orbital electron populations 1.24893 0.95759 0.99198 0.99160 1.19950 0.91953 1.01381 1.01491 1.15742 0.86717 0.93177 1.01708 1.21175 0.94175 0.96947 1.00846 1.20851 0.93651 0.97657 0.99551 1.21064 1.00389 0.91140 1.02773 1.17579 0.91035 0.85295 1.00352 1.43223 1.25191 1.06133 1.55329 1.20666 0.85151 0.85488 0.79241 1.90740 1.23795 1.86086 1.36028 1.19283 0.85458 0.83938 0.82326 1.90749 1.24511 1.85910 1.40155 1.48716 1.26610 1.07816 1.47168 1.22690 0.86492 0.99761 0.93640 1.22821 1.01632 0.93725 0.97651 1.19520 0.85064 0.88527 0.86136 1.86123 1.37368 1.67371 1.48343 1.21544 1.26574 1.15437 0.93819 0.91312 1.25085 0.95931 0.97266 0.95035 1.69645 1.41296 1.37133 1.05400 0.86324 0.79697 0.80783 0.79974 1.19545 1.20700 1.20757 1.23326 0.98969 0.77643 1.02336 1.21228 0.92389 0.98428 0.99679 0.75836 0.85465 0.84914 0.84997 0.73751 0.89476 0.91176 0.90195 0.90408 0.76552 0.91956 0.90740 0.90945 0.84148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 19.25 29.55 0.57 -1.08 16 2 C -0.15 -1.73 13.24 -38.84 -0.51 -2.25 16 3 C 0.03 0.32 5.72 -107.04 -0.61 -0.29 16 4 C -0.11 -1.06 9.75 -39.16 -0.38 -1.44 16 5 C -0.10 -0.81 10.02 -39.67 -0.40 -1.20 16 6 C -0.13 -1.24 9.96 -39.30 -0.39 -1.63 16 7 C 0.15 1.83 6.27 -83.80 -0.53 1.31 16 8 N -0.65 -8.44 5.32 -10.33 -0.05 -8.49 16 9 C 0.51 8.27 7.59 -11.63 -0.09 8.19 16 10 O -0.49 -8.52 11.46 5.47 0.06 -8.46 16 11 C 0.51 9.72 7.91 -11.63 -0.09 9.63 16 12 O -0.53 -11.10 16.81 5.49 0.09 -11.01 16 13 N -0.57 -11.68 3.33 -171.07 -0.57 -12.25 16 14 C 0.10 1.81 6.05 -2.53 -0.02 1.79 16 15 C -0.12 -2.42 6.23 -24.58 -0.15 -2.57 16 16 C 0.25 5.88 0.85 -89.94 -0.08 5.81 16 17 O -0.58 -14.43 13.07 -35.23 -0.46 -14.89 16 18 C -0.54 -13.69 8.12 -34.44 -0.28 -13.97 16 19 H 0.07 1.74 7.78 -52.48 -0.41 1.33 16 20 C 0.07 1.78 5.28 -17.82 -0.09 1.69 16 21 N -0.90 -23.22 10.98 55.43 0.61 -22.61 16 22 Si 0.90 20.08 29.54 -169.99 -5.02 15.05 16 23 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 C 0.10 2.29 5.37 -3.07 -0.02 2.27 16 27 C -0.10 -1.28 8.35 -38.98 -0.33 -1.61 16 28 H 0.22 1.21 7.80 -54.09 -0.42 0.78 16 29 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 30 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 31 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 32 H 0.42 4.74 8.30 -40.82 -0.34 4.40 16 33 H 0.09 1.53 6.16 -51.93 -0.32 1.21 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.08 1.50 8.04 -51.93 -0.42 1.08 16 37 H 0.38 9.68 7.26 45.56 0.33 10.01 16 38 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 39 H 0.07 1.86 7.82 -51.93 -0.41 1.45 16 40 H 0.07 1.82 7.98 -51.92 -0.41 1.40 16 41 H 0.14 2.08 6.42 -52.49 -0.34 1.75 16 LS Contribution 358.10 15.07 5.40 5.40 Total: -1.00 -29.47 358.10 -7.32 -36.79 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -3.98 Total: 15.83 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -3.39 Total: 4.65 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: -0.02 Total: -43.36 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -0.31 Total: -34.36 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.47 -7.32 -36.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832792894.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.101 kcal (2) G-P(sol) polarization free energy of solvation -29.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds