Wall clock time and date at job start Tue Mar 31 2020 15:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39596 * 120.10612 * 184.95271 * 3 2 1 5 5 C 1.38010 * 120.01125 * 180.02562 * 4 3 2 6 6 C 1.38227 * 120.22117 * 359.67933 * 5 4 3 7 7 C 1.39003 * 120.20975 * 0.59903 * 6 5 4 8 8 N 1.39743 * 120.00655 * 179.70169 * 7 6 5 9 9 C 1.34772 * 120.00289 * 146.32938 * 8 7 6 10 10 O 1.21377 * 119.99967 * 354.72192 * 9 8 7 11 11 C 1.49350 * 120.00203 * 174.71694 * 9 8 7 12 12 O 1.21360 * 120.00082 * 0.02562 * 11 9 8 13 13 N 1.34781 * 120.00263 * 179.97438 * 11 9 8 14 14 C 1.47426 * 125.64401 * 359.96031 * 13 11 9 15 15 C 1.54909 * 104.83062 * 204.16079 * 14 13 11 16 16 C 1.55157 * 101.58346 * 322.99738 * 15 14 13 17 17 O 1.42903 * 110.71782 * 277.13330 * 16 15 14 18 18 C 1.50696 * 110.87363 * 153.93462 * 16 15 14 19 19 H 1.08004 * 120.00265 * 2.54857 * 18 16 15 20 20 C 1.37873 * 119.99932 * 182.54216 * 18 16 15 21 21 N 1.31513 * 120.00360 * 0.02562 * 20 18 16 22 22 Si 1.86809 * 119.99843 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47123 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46815 * 120.00286 * 22 20 18 25 25 H 1.48500 * 109.47216 * 240.00110 * 22 20 18 26 26 C 1.47016 * 125.65122 * 180.02562 * 13 11 9 27 27 C 1.38704 * 119.98552 * 359.42166 * 7 6 5 28 28 H 4.52053 * 14.03226 * 0.02562 * 4 2 1 29 29 H 1.08003 * 119.99666 * 359.97438 * 4 3 2 30 30 H 1.08004 * 119.89029 * 179.97438 * 5 4 3 31 31 H 1.08004 * 119.89281 * 180.29791 * 6 5 4 32 32 H 0.97000 * 119.99804 * 326.32636 * 8 7 6 33 33 H 1.08993 * 110.36828 * 323.00181 * 14 13 11 34 34 H 1.09002 * 110.36400 * 85.33060 * 14 13 11 35 35 H 1.09000 * 111.00632 * 204.91750 * 15 14 13 36 36 H 1.09001 * 111.00379 * 81.07178 * 15 14 13 37 37 H 0.96702 * 114.00194 * 174.97574 * 17 16 15 38 38 H 0.97002 * 120.00129 * 179.97438 * 21 20 18 39 39 H 1.09004 * 109.88623 * 59.48366 * 26 13 11 40 40 H 1.09011 * 109.87845 * 298.32257 * 26 13 11 41 41 H 1.08000 * 120.10821 * 180.25139 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3057 1.2041 0.1043 5 6 4.6858 1.2025 0.1035 6 6 5.3801 0.0112 0.0064 7 6 4.6927 -1.1920 -0.1036 8 7 5.3990 -2.3933 -0.2078 9 6 4.8988 -3.5188 0.3395 10 8 3.8843 -3.4714 1.0042 11 6 5.5926 -4.8243 0.1280 12 8 6.6072 -4.8716 -0.5363 13 7 5.0927 -5.9497 0.6757 14 6 3.8752 -6.0353 1.5026 15 6 4.0687 -7.3091 2.3626 16 6 4.7788 -8.2569 1.3602 17 8 3.8262 -8.9004 0.5113 18 6 5.6169 -9.2768 2.0871 19 1 5.6251 -9.2984 3.1669 20 6 6.3731 -10.1824 1.3737 21 7 6.3634 -10.1560 0.0589 22 14 7.4125 -11.4463 2.2749 23 1 7.2506 -11.2665 3.7400 24 1 6.9727 -12.8122 1.8926 25 1 8.8401 -11.2652 1.9083 26 6 5.6719 -7.2950 0.5487 27 6 3.3057 -1.2004 -0.1042 28 1 -1.0500 -0.0011 0.0004 29 1 2.7669 2.1367 0.1847 30 1 5.2251 2.1347 0.1839 31 1 6.4601 0.0157 0.0112 32 1 6.2492 -2.4172 -0.6741 33 1 3.7876 -5.1563 2.1410 34 1 2.9932 -6.1352 0.8699 35 1 3.1083 -7.7193 2.6749 36 1 4.7037 -7.1057 3.2249 37 1 4.2225 -9.4443 -0.1832 38 1 6.8958 -10.7929 -0.4430 39 1 6.6852 -7.3019 0.9505 40 1 5.6843 -7.5958 -0.4990 41 1 2.7697 -2.1345 -0.1855 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832792894.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:24 Heat of formation + Delta-G solvation = -42.671729 kcal Electronic energy + Delta-G solvation = -26995.798527 eV Core-core repulsion = 23034.854754 eV Total energy + Delta-G solvation = -3960.943773 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.29143 -40.81049 -39.56113 -38.97672 -36.68849 -35.90340 -34.41910 -34.23039 -31.95877 -31.42463 -30.78059 -29.77354 -27.76397 -25.89359 -24.60986 -24.17096 -22.79516 -21.55595 -21.08250 -20.20568 -19.16471 -18.81523 -18.18024 -17.63627 -17.47906 -17.19730 -17.01296 -16.49941 -16.16475 -15.99643 -15.48233 -15.33220 -14.85800 -14.83127 -14.72682 -14.51518 -14.23142 -14.07430 -13.58725 -13.46131 -13.03671 -12.89232 -12.74733 -12.63857 -12.56632 -12.38022 -12.32087 -12.25449 -12.09699 -11.52533 -11.39642 -11.24371 -10.80178 -10.59554 -10.32723 -9.84600 -9.68795 -9.26028 -8.28778 -6.44025 -0.23281 0.01577 0.50211 1.06884 1.40918 1.44535 1.54985 1.75507 1.87536 2.09265 2.31670 2.40051 2.96510 2.97594 3.09110 3.35712 3.75148 3.91817 4.00778 4.10346 4.10588 4.17802 4.28429 4.40122 4.41643 4.56877 4.63407 4.70770 4.90460 5.02318 5.05809 5.10717 5.17251 5.19111 5.27930 5.37772 5.41443 5.45288 5.71481 5.82636 5.90901 6.02370 6.26195 6.48682 6.56223 6.63640 6.74327 7.26212 7.34404 8.78072 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.023901 B = 0.002644 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.206557 B =10588.102076 C =11295.627950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.202 4.202 3 C 0.010 3.990 4 C -0.108 4.108 5 C -0.088 4.088 6 C -0.125 4.125 7 C 0.128 3.872 8 N -0.633 5.633 9 C 0.519 3.481 10 O -0.507 6.507 11 C 0.507 3.493 12 O -0.554 6.554 13 N -0.580 5.580 14 C 0.107 3.893 15 C -0.114 4.114 16 C 0.234 3.766 17 O -0.587 6.587 18 C -0.555 4.555 19 H 0.068 0.932 20 C 0.027 3.973 21 N -0.915 5.915 22 Si 0.965 3.035 23 H -0.266 1.266 24 H -0.279 1.279 25 H -0.281 1.281 26 C 0.115 3.885 27 C -0.120 4.120 28 H 0.260 0.740 29 H 0.150 0.850 30 H 0.173 0.827 31 H 0.159 0.841 32 H 0.432 0.568 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.378 0.622 38 H 0.272 0.728 39 H 0.051 0.949 40 H 0.046 0.954 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.827 22.512 -0.189 23.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.202 4.202 3 C 0.009 3.991 4 C -0.127 4.127 5 C -0.106 4.106 6 C -0.144 4.144 7 C 0.034 3.966 8 N -0.281 5.281 9 C 0.301 3.699 10 O -0.381 6.381 11 C 0.290 3.710 12 O -0.434 6.434 13 N -0.312 5.312 14 C -0.015 4.015 15 C -0.152 4.152 16 C 0.194 3.806 17 O -0.396 6.396 18 C -0.593 4.593 19 H 0.086 0.914 20 C -0.174 4.174 21 N -0.554 5.554 22 Si 0.790 3.210 23 H -0.190 1.190 24 H -0.204 1.204 25 H -0.207 1.207 26 C -0.007 4.007 27 C -0.141 4.141 28 H 0.276 0.724 29 H 0.168 0.832 30 H 0.190 0.810 31 H 0.177 0.823 32 H 0.272 0.728 33 H 0.122 0.878 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.228 0.772 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.322 22.726 0.132 23.342 hybrid contribution 1.283 -1.672 -0.590 2.189 sum -4.039 21.054 -0.458 21.443 Atomic orbital electron populations 1.25822 0.96596 0.97118 0.97054 1.20465 0.92847 1.03412 1.03449 1.15980 0.87268 0.93612 1.02234 1.21539 0.94987 0.96845 0.99282 1.21321 0.93239 0.98691 0.97321 1.21407 1.01788 0.90198 1.01042 1.17772 0.90791 0.85524 1.02465 1.43037 1.25195 1.05649 1.54221 1.19959 0.84878 0.85100 0.79924 1.90734 1.24220 1.86071 1.37106 1.19862 0.85126 0.84749 0.81262 1.90724 1.25437 1.86486 1.40725 1.48712 1.27164 1.07269 1.48067 1.22673 0.85675 0.99779 0.93345 1.22821 1.01933 0.93226 0.97211 1.19716 0.85464 0.88786 0.86662 1.86114 1.37749 1.67399 1.48327 1.21817 1.27230 1.16282 0.93986 0.91381 1.25796 0.96918 0.98922 0.95730 1.69738 1.41705 1.37617 1.06373 0.85399 0.78016 0.78522 0.79052 1.19032 1.20434 1.20735 1.22844 0.97976 0.79518 1.00353 1.21116 0.93057 0.98107 1.01781 0.72353 0.83245 0.80982 0.82302 0.72775 0.87799 0.91249 0.89094 0.89507 0.77239 0.91898 0.93046 0.93599 0.86849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 19.25 74.32 1.43 -1.18 16 2 C -0.20 -4.64 13.24 30.01 0.40 -4.24 16 3 C 0.01 0.23 5.72 -21.43 -0.12 0.10 16 4 C -0.11 -1.77 9.75 22.54 0.22 -1.55 16 5 C -0.09 -1.11 10.02 22.21 0.22 -0.89 16 6 C -0.12 -1.97 9.96 22.45 0.22 -1.75 16 7 C 0.13 2.97 6.27 38.17 0.24 3.21 16 8 N -0.63 -16.13 5.32 -304.95 -1.62 -17.75 16 9 C 0.52 16.90 7.59 87.24 0.66 17.56 16 10 O -0.51 -17.64 11.46 -3.33 -0.04 -17.68 16 11 C 0.51 19.75 7.91 87.24 0.69 20.44 16 12 O -0.55 -23.50 16.81 -3.28 -0.06 -23.55 16 13 N -0.58 -24.24 3.33 -813.49 -2.71 -26.94 16 14 C 0.11 4.01 6.05 86.85 0.53 4.53 16 15 C -0.11 -4.56 6.23 31.99 0.20 -4.36 16 16 C 0.23 11.32 0.85 -10.35 -0.01 11.31 16 17 O -0.59 -29.78 13.07 -148.98 -1.95 -31.72 16 18 C -0.56 -28.72 8.12 25.60 0.21 -28.52 16 19 H 0.07 3.45 7.78 -2.91 -0.02 3.42 16 20 C 0.03 1.41 5.28 84.65 0.45 1.86 16 21 N -0.91 -48.51 10.98 21.45 0.24 -48.28 16 22 Si 0.96 41.36 29.54 68.60 2.03 43.38 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 24 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 25 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 26 C 0.12 5.58 5.37 86.73 0.47 6.05 16 27 C -0.12 -3.22 8.35 22.66 0.19 -3.03 16 28 H 0.26 2.05 7.80 -4.42 -0.03 2.02 16 29 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 30 H 0.17 0.87 8.06 -2.91 -0.02 0.84 16 31 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 32 H 0.43 9.32 8.30 -92.71 -0.77 8.56 16 33 H 0.10 3.59 6.16 -2.39 -0.01 3.57 16 34 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 36 H 0.09 3.29 8.04 -2.39 -0.02 3.27 16 37 H 0.38 19.77 7.26 -74.06 -0.54 19.23 16 38 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 39 H 0.05 2.68 7.82 -2.39 -0.02 2.66 16 40 H 0.05 2.42 7.98 -2.38 -0.02 2.40 16 41 H 0.11 3.57 6.42 -2.91 -0.02 3.55 16 Total: -1.00 -65.63 358.10 1.67 -63.96 By element: Atomic # 1 Polarization: 39.24 SS G_CDS: -0.21 Total: 39.03 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: 5.99 Total: 19.55 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -4.09 Total: -92.97 kcal Atomic # 8 Polarization: -70.91 SS G_CDS: -2.04 Total: -72.95 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.38 kcal Total: -65.63 1.67 -63.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832792894.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.292 kcal (2) G-P(sol) polarization free energy of solvation -65.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds