Wall clock time and date at job start Tue Mar 31 2020 14:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45197 * 110.85659 * 2 1 4 4 C 1.34866 * 116.99972 * 302.29105 * 3 2 1 5 5 O 1.21596 * 120.00121 * 354.68107 * 4 3 2 6 6 C 1.46720 * 120.00151 * 174.68641 * 4 3 2 7 7 C 1.36210 * 125.44670 * 174.90235 * 6 4 3 8 8 C 1.41664 * 107.73785 * 180.26276 * 7 6 4 9 9 C 1.40043 * 133.32989 * 180.45171 * 8 7 6 10 10 C 1.36567 * 119.82639 * 179.55379 * 9 8 7 11 11 C 1.38864 * 120.60460 * 359.75733 * 10 9 8 12 12 C 1.37836 * 120.63720 * 359.97438 * 11 10 9 13 13 C 1.39093 * 119.81403 * 359.97438 * 12 11 10 14 14 N 1.37831 * 133.15207 * 180.02562 * 13 12 11 15 15 C 1.36872 * 125.62065 * 0.02562 * 14 13 12 16 16 H 1.07997 * 120.00178 * 138.15729 * 15 14 13 17 17 C 1.39031 * 119.99613 * 318.14905 * 15 14 13 18 18 N 1.31342 * 120.00375 * 344.08681 * 17 15 14 19 19 Si 1.86799 * 119.99378 * 164.08729 * 17 15 14 20 20 H 1.48500 * 109.47586 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46798 * 120.00144 * 19 17 15 22 22 H 1.48503 * 109.46960 * 239.99536 * 19 17 15 23 23 C 1.54488 * 110.99819 * 236.19130 * 2 1 3 24 24 N 1.46772 * 105.47011 * 216.44991 * 23 2 1 25 25 C 1.34419 * 111.29925 * 17.01534 * 24 23 2 26 26 O 1.21282 * 124.93801 * 179.62984 * 25 24 23 27 27 C 1.51275 * 110.12043 * 359.59221 * 25 24 23 28 28 H 1.08996 * 109.47244 * 59.29588 * 1 2 3 29 29 H 1.09003 * 109.46672 * 179.29832 * 1 2 3 30 30 H 1.09005 * 109.46729 * 299.29283 * 1 2 3 31 31 H 1.07997 * 126.13589 * 0.02562 * 7 6 4 32 32 H 1.07996 * 120.09122 * 359.26898 * 9 8 7 33 33 H 1.08008 * 119.70221 * 179.73179 * 10 9 8 34 34 H 1.08001 * 119.68507 * 179.97438 * 11 10 9 35 35 H 1.07997 * 120.09574 * 179.97438 * 12 11 10 36 36 H 0.96998 * 120.00051 * 185.05635 * 18 17 15 37 37 H 1.09000 * 110.24495 * 335.44728 * 23 2 1 38 38 H 1.08997 * 110.24569 * 97.45167 * 23 2 1 39 39 H 0.96995 * 124.34247 * 197.03835 * 24 23 2 40 40 H 1.08999 * 110.49102 * 225.07159 * 27 25 24 41 41 H 1.08998 * 110.49119 * 102.42501 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0470 1.3568 0.0000 4 6 1.6651 2.1575 -1.0158 5 8 0.9998 1.7067 -1.9283 6 6 2.0524 3.5727 -1.0200 7 6 1.8136 4.4541 -2.0307 8 6 2.3491 5.7078 -1.6455 9 6 2.3946 6.9639 -2.2630 10 6 2.9879 8.0143 -1.6230 11 6 3.5435 7.8507 -0.3609 12 6 3.5061 6.6255 0.2695 13 6 2.9063 5.5409 -0.3619 14 7 2.7165 4.2251 0.0020 15 6 3.1203 3.6577 1.1803 16 1 2.4675 2.9733 1.7017 17 6 4.3708 3.9623 1.7059 18 7 5.2814 4.5294 0.9480 19 14 4.7560 3.5648 3.4900 20 1 3.5705 2.9340 4.1238 21 1 5.9074 2.6290 3.5512 22 1 5.0964 4.8162 4.2135 23 6 2.0836 -0.8025 -1.1984 24 7 3.2862 -1.4773 -0.6957 25 6 3.3092 -1.4971 0.6482 26 8 4.1857 -1.9978 1.3205 27 6 2.0835 -0.8031 1.1999 28 1 -0.3633 0.5247 -0.8836 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3633 0.5028 0.8963 31 1 1.3101 4.2354 -2.9607 32 1 1.9658 7.1005 -3.2447 33 1 3.0257 8.9812 -2.1029 34 1 4.0094 8.6914 0.1315 35 1 3.9413 6.5079 1.2509 36 1 6.1765 4.6751 1.2920 37 1 1.3503 -1.5370 -1.5315 38 1 2.3426 -0.1295 -2.0157 39 1 3.9757 -1.8595 -1.2607 40 1 2.3588 -0.1321 2.0136 41 1 1.3509 -1.5353 1.5393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838999335.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:01 Heat of formation + Delta-G solvation = -72.294577 kcal Electronic energy + Delta-G solvation = -28512.052345 eV Core-core repulsion = 24549.824029 eV Total energy + Delta-G solvation = -3962.228316 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.43156 -41.83003 -40.47654 -38.08218 -37.59212 -36.59347 -35.38980 -33.25023 -32.52498 -30.73907 -29.92217 -29.49186 -27.17838 -26.77819 -25.64058 -22.89893 -22.62071 -21.82670 -21.38519 -20.64712 -19.69010 -18.71902 -18.44294 -17.74540 -17.33033 -17.02538 -16.55508 -16.48934 -16.30281 -16.08638 -15.49836 -15.28982 -14.93806 -14.72550 -14.60217 -14.34366 -14.20902 -13.95666 -13.68288 -13.59160 -13.48130 -13.23066 -13.01067 -12.93271 -12.84208 -12.36738 -12.35278 -12.17905 -11.97404 -11.63565 -11.50248 -11.47047 -11.01345 -10.97188 -10.43395 -10.27269 -8.95039 -8.68770 -8.38961 -6.39659 -0.05251 1.08069 1.18625 1.33229 1.35920 1.41596 1.46670 1.63362 2.06824 2.27609 2.32903 2.77908 2.84065 3.13453 3.18820 3.34427 3.48069 3.80890 4.00692 4.20321 4.41451 4.42288 4.47289 4.50677 4.55772 4.60296 4.71900 4.73164 4.82208 4.89869 4.97484 5.16933 5.19100 5.24978 5.33913 5.36186 5.43929 5.64748 5.75779 5.85560 5.89709 5.95552 6.16699 6.28275 6.56997 6.75637 7.01027 7.07952 7.44467 8.36647 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.012542 B = 0.005232 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.995172 B = 5350.805438 C = 6975.959420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.093 3.907 3 O -0.334 6.334 4 C 0.553 3.447 5 O -0.517 6.517 6 C -0.050 4.050 7 C -0.161 4.161 8 C -0.154 4.154 9 C -0.086 4.086 10 C -0.153 4.153 11 C -0.133 4.133 12 C -0.088 4.088 13 C 0.068 3.932 14 N -0.260 5.260 15 C -0.361 4.361 16 H 0.112 0.888 17 C 0.021 3.979 18 N -0.854 5.854 19 Si 0.983 3.017 20 H -0.249 1.249 21 H -0.278 1.278 22 H -0.263 1.263 23 C 0.089 3.911 24 N -0.722 5.722 25 C 0.516 3.484 26 O -0.580 6.580 27 C -0.137 4.137 28 H 0.073 0.927 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.155 0.845 32 H 0.139 0.861 33 H 0.148 0.852 34 H 0.136 0.864 35 H 0.095 0.905 36 H 0.283 0.717 37 H 0.127 0.873 38 H 0.076 0.924 39 H 0.417 0.583 40 H 0.107 0.893 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.088 -4.555 -2.203 9.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.056 3.944 3 O -0.251 6.251 4 C 0.401 3.599 5 O -0.408 6.408 6 C -0.163 4.163 7 C -0.188 4.188 8 C -0.158 4.158 9 C -0.104 4.104 10 C -0.171 4.171 11 C -0.154 4.154 12 C -0.108 4.108 13 C -0.047 4.047 14 N 0.077 4.923 15 C -0.489 4.489 16 H 0.130 0.870 17 C -0.188 4.188 18 N -0.484 5.484 19 Si 0.804 3.196 20 H -0.172 1.172 21 H -0.204 1.204 22 H -0.188 1.188 23 C -0.035 4.035 24 N -0.376 5.376 25 C 0.304 3.696 26 O -0.461 6.461 27 C -0.177 4.177 28 H 0.091 0.909 29 H 0.134 0.866 30 H 0.092 0.908 31 H 0.172 0.828 32 H 0.157 0.843 33 H 0.166 0.834 34 H 0.154 0.846 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.145 0.855 38 H 0.094 0.906 39 H 0.257 0.743 40 H 0.125 0.875 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -7.625 -5.048 -1.712 9.303 hybrid contribution 1.189 -0.425 0.399 1.324 sum -6.436 -5.473 -1.314 8.550 Atomic orbital electron populations 1.22317 0.89566 1.06035 1.04227 1.23308 0.96637 0.78737 0.95737 1.86959 1.67237 1.23929 1.46977 1.19716 0.75674 0.84937 0.79585 1.90720 1.38071 1.75397 1.36642 1.19682 1.13115 0.90703 0.92781 1.20626 1.07856 0.91417 0.98942 1.18372 1.06141 0.95519 0.95757 1.20501 0.99846 0.90246 0.99854 1.20768 1.01463 0.99441 0.95448 1.21028 1.02001 0.95887 0.96451 1.20141 0.99340 0.91488 0.99816 1.18700 1.04132 0.85269 0.96638 1.40265 1.35700 1.04992 1.11354 1.20034 1.02287 1.29394 0.97177 0.87027 1.26418 0.94367 0.94321 1.03719 1.70024 1.03788 1.36783 1.37773 0.85025 0.79228 0.78753 0.76567 1.17213 1.20394 1.18810 1.22800 0.87544 0.96883 0.96234 1.46229 1.25273 1.58846 1.07289 1.21184 0.87358 0.77958 0.83113 1.90721 1.41891 1.49667 1.63811 1.22549 0.97096 1.00039 0.97988 0.90855 0.86634 0.90845 0.82781 0.84285 0.83425 0.84616 0.88684 0.90700 0.85494 0.90556 0.74339 0.87468 0.81655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 8.33 71.98 0.60 -2.83 16 2 C 0.09 2.51 1.01 -9.73 -0.01 2.50 16 3 O -0.33 -12.93 7.88 -57.80 -0.46 -13.39 16 4 C 0.55 23.01 7.07 70.04 0.50 23.51 16 5 O -0.52 -19.94 13.19 19.52 0.26 -19.69 16 6 C -0.05 -2.39 6.76 39.88 0.27 -2.12 16 7 C -0.16 -7.12 10.55 22.64 0.24 -6.88 16 8 C -0.15 -6.93 6.16 -21.34 -0.13 -7.07 16 9 C -0.09 -3.17 10.06 22.32 0.22 -2.94 16 10 C -0.15 -5.18 9.97 22.03 0.22 -4.96 16 11 C -0.13 -5.06 10.02 22.32 0.22 -4.83 16 12 C -0.09 -4.10 8.64 22.38 0.19 -3.91 16 13 C 0.07 3.41 6.06 39.07 0.24 3.65 16 14 N -0.26 -13.43 2.80 -331.40 -0.93 -14.36 16 15 C -0.36 -18.55 8.60 84.10 0.72 -17.83 16 16 H 0.11 5.55 7.04 -2.91 -0.02 5.53 16 17 C 0.02 1.07 4.49 84.96 0.38 1.45 16 18 N -0.85 -45.18 11.18 21.67 0.24 -44.93 16 19 Si 0.98 39.53 29.59 68.60 2.03 41.56 16 20 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 21 H -0.28 -11.37 7.11 99.48 0.71 -10.67 16 22 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 23 C 0.09 2.14 6.61 86.83 0.57 2.72 16 24 N -0.72 -18.81 6.24 -459.78 -2.87 -21.68 16 25 C 0.52 16.10 8.43 87.90 0.74 16.84 16 26 O -0.58 -22.92 18.03 -3.04 -0.05 -22.98 16 27 C -0.14 -3.44 6.18 30.59 0.19 -3.25 16 28 H 0.07 1.84 6.01 -2.39 -0.01 1.82 16 29 H 0.12 1.45 8.11 -2.39 -0.02 1.43 16 30 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.15 5.94 8.06 -2.91 -0.02 5.91 16 32 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 33 H 0.15 3.74 8.06 -2.91 -0.02 3.71 16 34 H 0.14 4.24 8.06 -2.91 -0.02 4.21 16 35 H 0.09 4.66 6.68 -2.91 -0.02 4.65 16 36 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 37 H 0.13 2.06 7.87 -2.39 -0.02 2.04 16 38 H 0.08 2.18 6.53 -2.39 -0.02 2.16 16 39 H 0.42 9.58 8.96 -92.71 -0.83 8.75 16 40 H 0.11 3.04 8.11 -2.39 -0.02 3.02 16 41 H 0.17 2.62 7.90 -2.39 -0.02 2.60 16 Total: -1.00 -69.24 345.10 3.65 -65.59 By element: Atomic # 1 Polarization: 35.57 SS G_CDS: 0.26 Total: 35.83 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 5.17 Total: -5.95 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -3.56 Total: -80.97 kcal Atomic # 8 Polarization: -55.80 SS G_CDS: -0.25 Total: -56.05 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Total: -69.24 3.65 -65.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838999335.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.706 kcal (2) G-P(sol) polarization free energy of solvation -69.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds