Wall clock time and date at job start Tue Mar 31 2020 15:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 110.28741 * 2 1 4 4 C 1.54368 * 110.32319 * 122.11765 * 2 1 3 5 5 C 1.54467 * 103.04713 * 136.71639 * 4 2 1 6 6 H 1.08999 * 110.40594 * 241.58567 * 5 4 2 7 7 N 1.46503 * 110.40286 * 119.16061 * 5 4 2 8 8 C 1.34778 * 120.00006 * 150.99403 * 7 5 4 9 9 O 1.21665 * 119.99932 * 4.78271 * 8 7 5 10 10 C 1.46884 * 120.00458 * 184.78850 * 8 7 5 11 11 C 1.36124 * 125.44079 * 185.39158 * 10 8 7 12 12 C 1.41700 * 107.75003 * 179.87933 * 11 10 8 13 13 C 1.40018 * 133.35566 * 180.13895 * 12 11 10 14 14 C 1.36579 * 119.83617 * 180.25617 * 13 12 11 15 15 C 1.38854 * 120.59784 * 0.02562 * 14 13 12 16 16 C 1.37849 * 120.63475 * 359.97438 * 15 14 13 17 17 C 1.39083 * 119.80942 * 0.02562 * 16 15 14 18 18 N 1.37849 * 133.15879 * 180.02562 * 17 16 15 19 19 C 1.36888 * 125.61839 * 359.93716 * 18 17 16 20 20 H 1.08005 * 119.99969 * 126.33668 * 19 18 17 21 21 C 1.39009 * 120.00021 * 306.33955 * 19 18 17 22 22 N 1.31350 * 119.99907 * 183.94933 * 21 19 18 23 23 Si 1.86794 * 120.00227 * 3.94336 * 21 19 18 24 24 H 1.48501 * 109.47358 * 94.89057 * 23 21 19 25 25 H 1.48509 * 109.47406 * 214.89352 * 23 21 19 26 26 H 1.48499 * 109.47174 * 334.89328 * 23 21 19 27 27 C 1.51508 * 104.62962 * 0.37852 * 5 4 2 28 28 O 1.20819 * 125.94562 * 159.58569 * 27 5 4 29 29 O 1.34567 * 108.10519 * 339.61288 * 27 5 4 30 30 H 1.09005 * 109.47455 * 297.88327 * 1 2 3 31 31 H 1.09001 * 109.47247 * 57.88543 * 1 2 3 32 32 H 1.09004 * 109.47082 * 177.88380 * 1 2 3 33 33 H 1.09000 * 110.70026 * 18.32734 * 4 2 1 34 34 H 1.08999 * 110.85003 * 255.17791 * 4 2 1 35 35 H 0.97002 * 120.00285 * 330.99433 * 7 5 4 36 36 H 1.07998 * 126.12229 * 0.02562 * 11 10 8 37 37 H 1.08006 * 120.08048 * 0.28385 * 13 12 11 38 38 H 1.07994 * 119.70017 * 180.02562 * 14 13 12 39 39 H 1.07994 * 119.68257 * 180.02562 * 15 14 13 40 40 H 1.07995 * 120.09330 * 180.02562 * 16 15 14 41 41 H 0.97001 * 119.99896 * 185.00269 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0661 -0.7696 1.2260 5 6 3.2144 -1.6150 0.6323 6 1 3.0088 -2.6779 0.7592 7 7 4.4883 -1.2610 1.2632 8 6 5.4676 -2.1812 1.3671 9 8 5.3275 -3.2784 0.8605 10 6 6.7039 -1.8595 2.0921 11 6 7.8006 -2.6614 2.1770 12 6 8.7701 -1.9860 2.9592 13 6 10.0669 -2.3119 3.3745 14 6 10.7731 -1.4353 4.1481 15 6 10.2166 -0.2214 4.5284 16 6 8.9417 0.1218 4.1320 17 6 8.2032 -0.7545 3.3439 18 7 6.9368 -0.6969 2.8024 19 6 6.0554 0.3407 2.9448 20 1 5.6170 0.8005 2.0713 21 6 5.7245 0.8026 4.2134 22 7 4.8209 1.7454 4.3541 23 14 6.5648 0.0823 5.7182 24 1 7.7218 0.9340 6.0943 25 1 5.6006 0.0307 6.8465 26 1 7.0403 -1.2904 5.4102 27 6 3.2351 -1.2529 -0.8388 28 8 4.1656 -1.4065 -1.5940 29 8 2.0368 -0.7300 -1.1576 30 1 -0.3634 0.4806 0.9084 31 1 -0.3634 0.5463 -0.8704 32 1 -0.3633 -1.0270 -0.0379 33 1 1.2922 -1.4120 1.6463 34 1 2.4452 -0.0809 1.9811 35 1 4.6270 -0.3643 1.6063 36 1 7.9126 -3.6365 1.7266 37 1 10.5079 -3.2539 3.0835 38 1 11.7733 -1.6887 4.4669 39 1 10.7883 0.4608 5.1400 40 1 8.5176 1.0685 4.4325 41 1 4.6421 2.1188 5.2314 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839769134.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:22 Heat of formation + Delta-G solvation = -44.150760 kcal Electronic energy + Delta-G solvation = -28250.936912 eV Core-core repulsion = 24289.929003 eV Total energy + Delta-G solvation = -3961.007908 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -41.18611 -40.77572 -38.56004 -37.44427 -36.29615 -34.78496 -33.60711 -32.45286 -31.55733 -30.07877 -29.17909 -28.18039 -25.15744 -24.85437 -23.38016 -21.81237 -21.26316 -21.10299 -20.37258 -19.49112 -18.60608 -17.22977 -16.96478 -16.66867 -15.98327 -15.85049 -15.47305 -15.13508 -14.80052 -14.41923 -14.29890 -14.16823 -13.52482 -13.40397 -13.39197 -13.29467 -12.87419 -12.82465 -12.59540 -12.33828 -12.24799 -12.07667 -11.62226 -11.53123 -11.30867 -11.11306 -10.92733 -10.68145 -10.55482 -10.48219 -10.28820 -10.10496 -9.62111 -9.44280 -8.85671 -8.67207 -7.43663 -7.13778 -6.93071 -4.96420 1.46325 1.98009 2.36715 2.70599 2.91227 3.04029 3.14931 3.30318 3.57372 3.78011 3.90391 4.05345 4.16844 4.32779 4.42312 4.49511 4.61134 4.76613 4.99494 5.24165 5.36525 5.42223 5.48621 5.58103 5.61421 5.74697 5.79639 5.84571 5.89002 6.06805 6.11657 6.30469 6.47791 6.60366 6.64010 6.70717 6.82509 7.09322 7.12143 7.21225 7.42794 7.50051 7.54191 7.58061 7.90731 8.05062 8.45946 8.72056 8.90774 9.97565 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.015821 B = 0.004526 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.364939 B = 6184.656940 C = 7456.830924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.080 3.920 3 H 0.097 0.903 4 C -0.160 4.160 5 C 0.087 3.913 6 H 0.131 0.869 7 N -0.708 5.708 8 C 0.601 3.399 9 O -0.544 6.544 10 C 0.001 3.999 11 C -0.152 4.152 12 C -0.127 4.127 13 C -0.070 4.070 14 C -0.163 4.163 15 C -0.118 4.118 16 C -0.124 4.124 17 C 0.082 3.918 18 N -0.290 5.290 19 C -0.375 4.375 20 H 0.118 0.882 21 C 0.089 3.911 22 N -0.836 5.836 23 Si 0.882 3.118 24 H -0.255 1.255 25 H -0.285 1.285 26 H -0.245 1.245 27 C 0.472 3.528 28 O -0.429 6.429 29 O -0.354 6.354 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.423 0.577 36 H 0.141 0.859 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.122 0.878 41 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.552 -0.742 0.174 4.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.025 3.975 3 H 0.115 0.885 4 C -0.198 4.198 5 C -0.021 4.021 6 H 0.149 0.851 7 N -0.371 5.371 8 C 0.390 3.610 9 O -0.422 6.422 10 C -0.113 4.113 11 C -0.179 4.179 12 C -0.132 4.132 13 C -0.088 4.088 14 C -0.182 4.182 15 C -0.138 4.138 16 C -0.144 4.144 17 C -0.032 4.032 18 N 0.043 4.957 19 C -0.502 4.502 20 H 0.135 0.865 21 C -0.125 4.125 22 N -0.465 5.465 23 Si 0.707 3.293 24 H -0.180 1.180 25 H -0.212 1.212 26 H -0.169 1.169 27 C 0.308 3.692 28 O -0.308 6.308 29 O -0.272 6.272 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.130 0.870 35 H 0.272 0.728 36 H 0.159 0.841 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.140 0.860 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.836 -1.181 -0.616 5.016 hybrid contribution 0.347 0.416 1.048 1.180 sum -4.489 -0.765 0.432 4.574 Atomic orbital electron populations 1.21908 0.91696 1.03614 1.03387 1.23651 0.96366 0.95606 0.81897 0.88508 1.23249 0.97775 1.00377 0.98421 1.22129 0.86371 1.03432 0.90217 0.85130 1.46583 1.12546 1.17629 1.60340 1.17216 0.81932 0.83804 0.78072 1.90749 1.80179 1.23076 1.48148 1.20213 0.96342 0.89020 1.05720 1.20545 0.92534 1.00046 1.04790 1.18046 0.95449 0.95738 1.03975 1.20228 0.92510 0.98699 0.97394 1.20386 0.99806 0.95415 1.02606 1.20638 0.94602 0.97174 1.01402 1.20226 0.94785 0.99447 0.99936 1.18525 0.86099 0.97023 1.01527 1.40230 1.08632 1.11591 1.35220 1.19024 1.23791 1.12079 0.95267 0.86516 1.25507 0.93378 0.94729 0.98935 1.69563 1.26794 1.23377 1.26798 0.86760 0.79161 0.82682 0.80690 1.18037 1.21217 1.16851 1.23837 0.80407 0.74400 0.90548 1.90703 1.32472 1.49124 1.58463 1.87293 1.33444 1.65812 1.40691 0.89844 0.91272 0.91229 0.88004 0.86963 0.72836 0.84123 0.86885 0.87034 0.86767 0.86048 0.90117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.49 37.15 0.35 -0.83 16 2 C 0.08 0.89 4.13 -26.02 -0.11 0.78 16 3 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.16 -1.88 6.51 -25.24 -0.16 -2.05 16 5 C 0.09 1.38 3.42 -67.91 -0.23 1.15 16 6 H 0.13 2.05 7.51 -51.93 -0.39 1.66 16 7 N -0.71 -13.68 4.95 -55.03 -0.27 -13.95 16 8 C 0.60 13.28 7.77 -12.76 -0.10 13.18 16 9 O -0.54 -12.76 16.48 5.22 0.09 -12.67 16 10 C 0.00 0.01 6.77 -82.25 -0.56 -0.54 16 11 C -0.15 -3.29 10.55 -39.02 -0.41 -3.70 16 12 C -0.13 -2.72 6.16 -106.89 -0.66 -3.38 16 13 C -0.07 -1.26 10.06 -39.51 -0.40 -1.66 16 14 C -0.16 -2.73 9.97 -39.95 -0.40 -3.13 16 15 C -0.12 -2.11 10.02 -39.50 -0.40 -2.51 16 16 C -0.12 -2.60 6.86 -39.41 -0.27 -2.87 16 17 C 0.08 1.85 4.56 -83.83 -0.38 1.47 16 18 N -0.29 -6.78 2.41 -56.08 -0.14 -6.91 16 19 C -0.38 -8.82 8.31 -15.01 -0.12 -8.94 16 20 H 0.12 2.78 6.43 -52.48 -0.34 2.45 16 21 C 0.09 2.08 5.49 -17.47 -0.10 1.98 16 22 N -0.84 -19.56 13.95 55.50 0.77 -18.79 16 23 Si 0.88 19.30 23.54 -169.99 -4.00 15.29 16 24 H -0.26 -5.31 6.07 56.52 0.34 -4.97 16 25 H -0.29 -6.19 7.11 56.52 0.40 -5.78 16 26 H -0.25 -5.79 6.24 56.52 0.35 -5.44 16 27 C 0.47 8.32 8.15 36.40 0.30 8.62 16 28 O -0.43 -9.25 17.98 -18.31 -0.33 -9.58 16 29 O -0.35 -5.25 10.87 -39.75 -0.43 -5.68 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.10 0.94 7.82 -51.93 -0.41 0.53 16 34 H 0.11 1.42 7.75 -51.93 -0.40 1.02 16 35 H 0.42 8.36 4.32 -40.82 -0.18 8.19 16 36 H 0.14 2.78 8.06 -52.49 -0.42 2.36 16 37 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 38 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 39 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 40 H 0.12 2.55 5.73 -52.49 -0.30 2.25 16 41 H 0.29 6.31 8.31 -40.82 -0.34 5.97 16 LS Contribution 340.47 15.07 5.13 5.13 Total: -1.00 -29.34 340.47 -7.46 -36.81 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -4.64 Total: 12.78 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -3.65 Total: -2.43 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.37 Total: -39.65 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.68 Total: -27.93 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.00 Total: 15.29 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.34 -7.46 -36.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839769134.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.345 kcal (2) G-P(sol) polarization free energy of solvation -29.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds