Wall clock time and date at job start Tue Mar 31 2020 15:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 110.28741 * 2 1 4 4 C 1.54368 * 110.32319 * 122.11765 * 2 1 3 5 5 C 1.54467 * 103.04713 * 136.71639 * 4 2 1 6 6 H 1.08999 * 110.40594 * 241.58567 * 5 4 2 7 7 N 1.46503 * 110.40286 * 119.16061 * 5 4 2 8 8 C 1.34778 * 120.00006 * 150.99403 * 7 5 4 9 9 O 1.21665 * 119.99932 * 4.78271 * 8 7 5 10 10 C 1.46884 * 120.00458 * 184.78850 * 8 7 5 11 11 C 1.36124 * 125.44079 * 185.39158 * 10 8 7 12 12 C 1.41700 * 107.75003 * 179.87933 * 11 10 8 13 13 C 1.40018 * 133.35566 * 180.13895 * 12 11 10 14 14 C 1.36579 * 119.83617 * 180.25617 * 13 12 11 15 15 C 1.38854 * 120.59784 * 0.02562 * 14 13 12 16 16 C 1.37849 * 120.63475 * 359.97438 * 15 14 13 17 17 C 1.39083 * 119.80942 * 0.02562 * 16 15 14 18 18 N 1.37849 * 133.15879 * 180.02562 * 17 16 15 19 19 C 1.36888 * 125.61839 * 359.93716 * 18 17 16 20 20 H 1.08005 * 119.99969 * 126.33668 * 19 18 17 21 21 C 1.39009 * 120.00021 * 306.33955 * 19 18 17 22 22 N 1.31350 * 119.99907 * 183.94933 * 21 19 18 23 23 Si 1.86794 * 120.00227 * 3.94336 * 21 19 18 24 24 H 1.48501 * 109.47358 * 94.89057 * 23 21 19 25 25 H 1.48509 * 109.47406 * 214.89352 * 23 21 19 26 26 H 1.48499 * 109.47174 * 334.89328 * 23 21 19 27 27 C 1.51508 * 104.62962 * 0.37852 * 5 4 2 28 28 O 1.20819 * 125.94562 * 159.58569 * 27 5 4 29 29 O 1.34567 * 108.10519 * 339.61288 * 27 5 4 30 30 H 1.09005 * 109.47455 * 297.88327 * 1 2 3 31 31 H 1.09001 * 109.47247 * 57.88543 * 1 2 3 32 32 H 1.09004 * 109.47082 * 177.88380 * 1 2 3 33 33 H 1.09000 * 110.70026 * 18.32734 * 4 2 1 34 34 H 1.08999 * 110.85003 * 255.17791 * 4 2 1 35 35 H 0.97002 * 120.00285 * 330.99433 * 7 5 4 36 36 H 1.07998 * 126.12229 * 0.02562 * 11 10 8 37 37 H 1.08006 * 120.08048 * 0.28385 * 13 12 11 38 38 H 1.07994 * 119.70017 * 180.02562 * 14 13 12 39 39 H 1.07994 * 119.68257 * 180.02562 * 15 14 13 40 40 H 1.07995 * 120.09330 * 180.02562 * 16 15 14 41 41 H 0.97001 * 119.99896 * 185.00269 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0661 -0.7696 1.2260 5 6 3.2144 -1.6150 0.6323 6 1 3.0088 -2.6779 0.7592 7 7 4.4883 -1.2610 1.2632 8 6 5.4676 -2.1812 1.3671 9 8 5.3275 -3.2784 0.8605 10 6 6.7039 -1.8595 2.0921 11 6 7.8006 -2.6614 2.1770 12 6 8.7701 -1.9860 2.9592 13 6 10.0669 -2.3119 3.3745 14 6 10.7731 -1.4353 4.1481 15 6 10.2166 -0.2214 4.5284 16 6 8.9417 0.1218 4.1320 17 6 8.2032 -0.7545 3.3439 18 7 6.9368 -0.6969 2.8024 19 6 6.0554 0.3407 2.9448 20 1 5.6170 0.8005 2.0713 21 6 5.7245 0.8026 4.2134 22 7 4.8209 1.7454 4.3541 23 14 6.5648 0.0823 5.7182 24 1 7.7218 0.9340 6.0943 25 1 5.6006 0.0307 6.8465 26 1 7.0403 -1.2904 5.4102 27 6 3.2351 -1.2529 -0.8388 28 8 4.1656 -1.4065 -1.5940 29 8 2.0368 -0.7300 -1.1576 30 1 -0.3634 0.4806 0.9084 31 1 -0.3634 0.5463 -0.8704 32 1 -0.3633 -1.0270 -0.0379 33 1 1.2922 -1.4120 1.6463 34 1 2.4452 -0.0809 1.9811 35 1 4.6270 -0.3643 1.6063 36 1 7.9126 -3.6365 1.7266 37 1 10.5079 -3.2539 3.0835 38 1 11.7733 -1.6887 4.4669 39 1 10.7883 0.4608 5.1400 40 1 8.5176 1.0685 4.4325 41 1 4.6421 2.1188 5.2314 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839769134.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:21 Heat of formation + Delta-G solvation = -61.697554 kcal Electronic energy + Delta-G solvation = -28251.697798 eV Core-core repulsion = 24289.929003 eV Total energy + Delta-G solvation = -3961.768794 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.67170 -42.20063 -40.17247 -38.86912 -37.83058 -36.28234 -35.30744 -33.54609 -33.18517 -31.39500 -30.66948 -29.64191 -26.78617 -26.04418 -24.88416 -22.90922 -22.83070 -22.45664 -21.85366 -21.13485 -20.28343 -18.62832 -18.42128 -18.04428 -17.67090 -17.17763 -16.88343 -16.61764 -16.34623 -16.02232 -15.78249 -15.57783 -15.07570 -14.99491 -14.86774 -14.68906 -14.43811 -14.00194 -13.70781 -13.68084 -13.62502 -13.20741 -13.01529 -12.80698 -12.59591 -12.51857 -12.34678 -12.28368 -12.03158 -11.90012 -11.68061 -11.55857 -11.31153 -11.14387 -10.47752 -10.20878 -9.04071 -8.85021 -8.59126 -6.75140 -0.11114 0.59230 0.86606 1.06224 1.19277 1.29659 1.39619 1.97021 2.03573 2.16144 2.30345 2.43993 2.61481 2.88764 3.09156 3.18637 3.51867 3.79475 3.81690 3.96908 4.14398 4.20051 4.25672 4.34750 4.54725 4.61530 4.65398 4.74896 4.77256 4.86010 4.97005 4.97608 5.06546 5.17138 5.21434 5.26464 5.39740 5.58132 5.63477 5.67038 5.76565 5.90733 5.98518 6.17712 6.32928 6.38920 6.71092 7.04870 7.20096 8.22244 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.015821 B = 0.004526 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.364939 B = 6184.656940 C = 7456.830924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.075 3.925 3 H 0.101 0.899 4 C -0.146 4.146 5 C 0.080 3.920 6 H 0.134 0.866 7 N -0.704 5.704 8 C 0.595 3.405 9 O -0.567 6.567 10 C -0.030 4.030 11 C -0.154 4.154 12 C -0.148 4.148 13 C -0.071 4.071 14 C -0.154 4.154 15 C -0.101 4.101 16 C -0.159 4.159 17 C 0.060 3.940 18 N -0.305 5.305 19 C -0.379 4.379 20 H 0.102 0.898 21 C 0.068 3.932 22 N -0.854 5.854 23 Si 0.922 3.078 24 H -0.238 1.238 25 H -0.284 1.284 26 H -0.272 1.272 27 C 0.474 3.526 28 O -0.479 6.479 29 O -0.355 6.355 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.136 0.864 34 H 0.105 0.895 35 H 0.421 0.579 36 H 0.153 0.847 37 H 0.145 0.855 38 H 0.158 0.842 39 H 0.151 0.849 40 H 0.113 0.887 41 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.834 -0.694 1.799 4.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.021 3.979 3 H 0.119 0.881 4 C -0.184 4.184 5 C -0.027 4.027 6 H 0.152 0.848 7 N -0.365 5.365 8 C 0.384 3.616 9 O -0.448 6.448 10 C -0.143 4.143 11 C -0.182 4.182 12 C -0.153 4.153 13 C -0.089 4.089 14 C -0.173 4.173 15 C -0.121 4.121 16 C -0.179 4.179 17 C -0.052 4.052 18 N 0.026 4.974 19 C -0.505 4.505 20 H 0.119 0.881 21 C -0.144 4.144 22 N -0.485 5.485 23 Si 0.747 3.253 24 H -0.162 1.162 25 H -0.211 1.211 26 H -0.197 1.197 27 C 0.313 3.687 28 O -0.362 6.362 29 O -0.273 6.273 30 H 0.125 0.875 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.154 0.846 34 H 0.123 0.877 35 H 0.269 0.731 36 H 0.171 0.829 37 H 0.163 0.837 38 H 0.175 0.825 39 H 0.168 0.832 40 H 0.131 0.869 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.159 -1.090 1.024 4.420 hybrid contribution 0.224 0.394 0.537 0.703 sum -3.935 -0.696 1.561 4.290 Atomic orbital electron populations 1.21957 0.88586 1.04586 1.04866 1.24046 0.98639 0.95130 0.80102 0.88061 1.23291 0.96680 1.00065 0.98331 1.22434 0.86250 1.04547 0.89473 0.84809 1.46557 1.13282 1.16921 1.59693 1.17309 0.82383 0.83924 0.77988 1.90709 1.80743 1.23916 1.49399 1.20498 0.97273 0.89794 1.06722 1.20828 0.92480 1.00358 1.04506 1.18422 0.96941 0.95403 1.04500 1.20683 0.91115 1.00325 0.96798 1.20917 1.01389 0.94160 1.00806 1.21184 0.93257 0.97965 0.99699 1.20386 0.96410 0.99397 1.01728 1.18974 0.86100 0.98144 1.02015 1.40243 1.09216 1.11642 1.36266 1.18907 1.24284 1.12325 0.94980 0.88061 1.25826 0.93686 0.94961 0.99965 1.69579 1.27341 1.24047 1.27486 0.86185 0.79138 0.80915 0.79095 1.16182 1.21093 1.19722 1.24088 0.80489 0.73421 0.90685 1.90669 1.34517 1.51299 1.59746 1.87291 1.31884 1.65541 1.42600 0.87509 0.90676 0.90459 0.84618 0.87661 0.73132 0.82938 0.83730 0.82454 0.83168 0.86905 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.49 71.98 0.68 -1.19 16 2 C 0.08 1.56 4.13 31.06 0.13 1.69 16 3 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 4 C -0.15 -3.28 6.51 31.56 0.21 -3.08 16 5 C 0.08 2.61 3.42 45.00 0.15 2.77 16 6 H 0.13 4.28 7.51 -2.39 -0.02 4.26 16 7 N -0.70 -28.40 4.95 -446.26 -2.21 -30.61 16 8 C 0.59 27.51 7.77 86.51 0.67 28.18 16 9 O -0.57 -27.74 16.48 -4.24 -0.07 -27.81 16 10 C -0.03 -1.44 6.77 39.91 0.27 -1.17 16 11 C -0.15 -6.80 10.55 22.63 0.24 -6.57 16 12 C -0.15 -6.24 6.16 -21.33 -0.13 -6.38 16 13 C -0.07 -2.35 10.06 22.31 0.22 -2.12 16 14 C -0.15 -4.47 9.97 22.03 0.22 -4.25 16 15 C -0.10 -3.26 10.02 22.33 0.22 -3.04 16 16 C -0.16 -6.47 6.86 22.38 0.15 -6.32 16 17 C 0.06 2.75 4.56 39.06 0.18 2.93 16 18 N -0.31 -14.74 2.41 -331.33 -0.80 -15.53 16 19 C -0.38 -18.42 8.31 84.09 0.70 -17.72 16 20 H 0.10 5.11 6.43 -2.91 -0.02 5.09 16 21 C 0.07 3.23 5.49 84.95 0.47 3.69 16 22 N -0.85 -40.25 13.95 21.67 0.30 -39.95 16 23 Si 0.92 39.80 23.54 68.60 1.61 41.42 16 24 H -0.24 -9.45 6.07 99.48 0.60 -8.85 16 25 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 26 H -0.27 -12.95 6.24 99.48 0.62 -12.33 16 27 C 0.47 17.28 8.15 71.49 0.58 17.86 16 28 O -0.48 -21.79 17.98 21.57 0.39 -21.40 16 29 O -0.36 -10.46 10.87 -55.12 -0.60 -11.06 16 30 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.14 2.15 7.82 -2.39 -0.02 2.13 16 34 H 0.10 2.61 7.75 -2.39 -0.02 2.59 16 35 H 0.42 17.51 4.32 -92.71 -0.40 17.11 16 36 H 0.15 6.12 8.06 -2.91 -0.02 6.10 16 37 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 38 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 39 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 40 H 0.11 4.68 5.73 -2.91 -0.02 4.67 16 41 H 0.29 12.84 8.31 -92.71 -0.77 12.07 16 Total: -1.00 -66.73 340.47 4.09 -62.64 By element: Atomic # 1 Polarization: 36.52 SS G_CDS: 0.50 Total: 37.02 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 4.97 Total: 5.29 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -2.70 Total: -86.09 kcal Atomic # 8 Polarization: -59.99 SS G_CDS: -0.28 Total: -60.27 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 1.61 Total: 41.42 kcal Total: -66.73 4.09 -62.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839769134.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.941 kcal (2) G-P(sol) polarization free energy of solvation -66.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds