Wall clock time and date at job start Tue Mar 31 2020 15:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09008 * 110.49135 * 2 1 4 4 C 1.54576 * 110.44195 * 237.51285 * 2 1 3 5 5 C 1.54492 * 102.14329 * 214.40688 * 4 2 1 6 6 H 1.09000 * 110.46656 * 256.45883 * 5 4 2 7 7 N 1.46504 * 110.36424 * 134.18451 * 5 4 2 8 8 C 1.34771 * 119.99999 * 154.20746 * 7 5 4 9 9 O 1.21663 * 120.00508 * 4.80647 * 8 7 5 10 10 C 1.46893 * 120.00091 * 184.80236 * 8 7 5 11 11 C 1.36116 * 125.43922 * 185.57263 * 10 8 7 12 12 C 1.41705 * 107.74940 * 180.02562 * 11 10 8 13 13 C 1.40024 * 133.35069 * 180.02562 * 12 11 10 14 14 C 1.36570 * 119.82933 * 179.97438 * 13 12 11 15 15 C 1.38854 * 120.60103 * 359.97438 * 14 13 12 16 16 C 1.37839 * 120.63625 * 0.02562 * 15 14 13 17 17 C 1.39094 * 119.80767 * 359.97438 * 16 15 14 18 18 N 1.37842 * 133.15490 * 180.34181 * 17 16 15 19 19 C 1.36890 * 125.62415 * 359.94376 * 18 17 16 20 20 H 1.07997 * 119.99835 * 129.24397 * 19 18 17 21 21 C 1.39009 * 119.99856 * 309.23972 * 19 18 17 22 22 N 1.31351 * 120.00266 * 4.56507 * 21 19 18 23 23 Si 1.86798 * 120.00004 * 184.56498 * 21 19 18 24 24 H 1.48501 * 109.47306 * 95.00088 * 23 21 19 25 25 H 1.48498 * 109.47287 * 215.00088 * 23 21 19 26 26 H 1.48504 * 109.47261 * 335.00212 * 23 21 19 27 27 C 1.51323 * 104.82784 * 15.34595 * 5 4 2 28 28 O 1.20821 * 125.09722 * 182.27731 * 27 5 4 29 29 O 1.34067 * 109.80887 * 2.31399 * 27 5 4 30 30 H 1.08999 * 109.47679 * 298.96506 * 1 2 3 31 31 H 1.09000 * 109.47623 * 58.96248 * 1 2 3 32 32 H 1.09005 * 109.47052 * 178.96401 * 1 2 3 33 33 H 1.09001 * 110.86734 * 96.24627 * 4 2 1 34 34 H 1.08994 * 111.04423 * 332.65081 * 4 2 1 35 35 H 0.97001 * 119.99966 * 334.20350 * 7 5 4 36 36 H 1.08002 * 126.12395 * 359.96796 * 11 10 8 37 37 H 1.08007 * 120.08265 * 359.97179 * 13 12 11 38 38 H 1.08001 * 119.70058 * 179.97438 * 14 13 12 39 39 H 1.08004 * 119.68148 * 179.97438 * 15 14 13 40 40 H 1.08000 * 120.09725 * 179.97438 * 16 15 14 41 41 H 0.96996 * 119.99953 * 184.99870 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9115 1.0211 0.0000 4 6 2.0698 -0.7780 -1.2218 5 6 3.3509 -1.4277 -0.6531 6 1 4.2354 -0.8932 -0.9998 7 7 3.4234 -2.8381 -1.0427 8 6 4.6195 -3.4534 -1.1268 9 8 5.6312 -2.8645 -0.7954 10 6 4.7017 -4.8351 -1.6185 11 6 5.8297 -5.5964 -1.6483 12 6 5.4846 -6.8588 -2.1918 13 6 6.2157 -8.0228 -2.4584 14 6 5.5896 -9.1094 -2.9993 15 6 4.2318 -9.0718 -3.2877 16 6 3.4910 -7.9374 -3.0342 17 6 4.1067 -6.8183 -2.4837 18 7 3.6449 -5.5715 -2.1199 19 6 2.3534 -5.1335 -2.2388 20 1 1.8549 -4.6859 -1.3918 21 6 1.6837 -5.2650 -3.4498 22 7 2.2571 -5.8894 -4.4531 23 14 -0.0318 -4.5537 -3.6504 24 1 0.0610 -3.2001 -4.2541 25 1 -0.8334 -5.4364 -4.5354 26 1 -0.6870 -4.4588 -2.3210 27 6 3.2148 -1.3024 0.8488 28 8 4.0414 -1.6614 1.6535 29 8 2.0392 -0.7340 1.1526 30 1 -0.3634 0.4977 0.8991 31 1 -0.3634 0.5298 -0.8805 32 1 -0.3633 -1.0276 -0.0186 33 1 2.3092 -0.0986 -2.0398 34 1 1.3598 -1.5386 -1.5463 35 1 2.6104 -3.3291 -1.2401 36 1 6.8119 -5.2925 -1.3178 37 1 7.2721 -8.0613 -2.2370 38 1 6.1556 -10.0060 -3.2044 39 1 3.7518 -9.9396 -3.7156 40 1 2.4356 -7.9176 -3.2624 41 1 1.8213 -5.9184 -5.3191 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839769136.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:29 Heat of formation + Delta-G solvation = -52.955331 kcal Electronic energy + Delta-G solvation = -28224.548127 eV Core-core repulsion = 24263.158424 eV Total energy + Delta-G solvation = -3961.389703 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.19252 -40.43781 -38.43691 -37.47613 -35.96482 -34.78632 -33.63314 -32.56532 -30.81684 -30.03974 -28.87744 -27.89261 -25.20012 -24.87625 -23.14154 -22.16456 -21.10469 -20.86206 -20.00958 -19.43044 -18.33441 -17.50590 -16.75381 -16.55826 -16.32076 -15.69152 -14.95997 -14.93239 -14.68374 -14.59348 -14.02578 -13.89624 -13.71842 -13.16611 -13.11627 -13.02366 -12.92144 -12.72922 -12.54388 -12.18675 -12.05982 -11.96971 -11.72841 -11.64906 -11.30255 -11.16035 -10.82893 -10.71317 -10.68045 -10.54061 -10.19471 -9.79305 -9.52569 -9.38449 -8.70198 -8.63291 -7.22894 -6.91760 -6.63017 -4.84977 1.78705 2.09318 2.69992 2.81725 2.85436 2.87994 3.00339 3.07749 3.58286 3.66190 3.94703 4.08753 4.28695 4.40832 4.52544 4.54450 4.60547 4.88097 5.03814 5.08243 5.33462 5.44295 5.55917 5.61067 5.74221 5.83057 5.84714 5.94443 6.12747 6.40043 6.55393 6.65773 6.67712 6.73971 6.78569 6.86572 7.07169 7.09866 7.43000 7.54069 7.57451 7.62287 7.83781 7.88111 8.02323 8.26623 8.55687 8.81737 9.20988 10.05572 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013165 B = 0.004895 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.397988 B = 5718.495963 C = 7448.375543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.081 3.919 3 H 0.099 0.901 4 C -0.162 4.162 5 C 0.088 3.912 6 H 0.128 0.872 7 N -0.712 5.712 8 C 0.600 3.400 9 O -0.540 6.540 10 C -0.015 4.015 11 C -0.158 4.158 12 C -0.136 4.136 13 C -0.086 4.086 14 C -0.160 4.160 15 C -0.146 4.146 16 C -0.052 4.052 17 C 0.115 3.885 18 N -0.267 5.267 19 C -0.377 4.377 20 H 0.102 0.898 21 C 0.063 3.937 22 N -0.816 5.816 23 Si 0.919 3.081 24 H -0.267 1.267 25 H -0.272 1.272 26 H -0.260 1.260 27 C 0.468 3.532 28 O -0.433 6.433 29 O -0.347 6.347 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.418 0.582 36 H 0.134 0.866 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.118 0.882 41 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.070 7.394 0.618 9.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.025 3.975 3 H 0.117 0.883 4 C -0.199 4.199 5 C -0.020 4.020 6 H 0.145 0.855 7 N -0.376 5.376 8 C 0.390 3.610 9 O -0.417 6.417 10 C -0.130 4.130 11 C -0.186 4.186 12 C -0.140 4.140 13 C -0.105 4.105 14 C -0.179 4.179 15 C -0.167 4.167 16 C -0.072 4.072 17 C 0.000 4.000 18 N 0.068 4.932 19 C -0.505 4.505 20 H 0.119 0.881 21 C -0.151 4.151 22 N -0.445 5.445 23 Si 0.743 3.257 24 H -0.192 1.192 25 H -0.197 1.197 26 H -0.184 1.184 27 C 0.304 3.696 28 O -0.313 6.313 29 O -0.264 6.264 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.126 0.874 34 H 0.119 0.881 35 H 0.266 0.734 36 H 0.151 0.849 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.136 0.864 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.510 7.695 1.212 9.542 hybrid contribution -1.169 0.110 -0.631 1.333 sum -6.679 7.805 0.581 10.290 Atomic orbital electron populations 1.21925 0.91662 1.04020 1.03376 1.23681 0.96433 0.95256 0.82122 0.88341 1.23392 0.96710 1.01381 0.98466 1.22081 1.01240 0.86836 0.91889 0.85483 1.46572 1.11344 1.09337 1.70336 1.17340 0.82762 0.84835 0.76050 1.90756 1.35344 1.65980 1.49611 1.20041 0.89191 0.92108 1.11613 1.20437 0.96827 0.93181 1.08162 1.18055 0.93869 0.95072 1.07025 1.20066 0.98059 0.92094 1.00294 1.20283 0.94932 0.97984 1.04690 1.20598 0.94168 0.97536 1.04365 1.20087 0.99744 0.90201 0.97156 1.18336 0.92565 0.86633 1.02433 1.39864 1.05449 1.06540 1.41386 1.19355 0.87479 1.45334 0.98288 0.88121 1.25729 1.00317 0.94186 0.94861 1.69925 1.39008 1.33304 1.02222 0.86014 0.80526 0.79557 0.79646 1.19152 1.19662 1.18372 1.23675 0.79418 0.74696 0.91818 1.90733 1.39033 1.44414 1.57076 1.87060 1.35540 1.63313 1.40501 0.91074 0.89881 0.91040 0.87432 0.88141 0.73423 0.84850 0.87697 0.87876 0.87644 0.86448 0.90557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.57 37.15 0.36 -0.79 16 2 C 0.08 0.76 4.17 -25.91 -0.11 0.66 16 3 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16 4 C -0.16 -1.69 6.45 -25.12 -0.16 -1.85 16 5 C 0.09 1.35 3.31 -67.99 -0.23 1.12 16 6 H 0.13 1.93 7.60 -51.93 -0.39 1.53 16 7 N -0.71 -13.51 5.01 -55.11 -0.28 -13.78 16 8 C 0.60 13.58 7.77 -12.76 -0.10 13.48 16 9 O -0.54 -13.09 16.53 5.22 0.09 -13.01 16 10 C -0.02 -0.37 6.77 -82.25 -0.56 -0.93 16 11 C -0.16 -3.72 10.55 -39.02 -0.41 -4.13 16 12 C -0.14 -3.17 6.16 -106.89 -0.66 -3.83 16 13 C -0.09 -1.76 10.06 -39.51 -0.40 -2.16 16 14 C -0.16 -3.05 9.97 -39.96 -0.40 -3.45 16 15 C -0.15 -2.92 10.02 -39.50 -0.40 -3.32 16 16 C -0.05 -1.19 8.60 -39.41 -0.34 -1.53 16 17 C 0.11 2.82 6.02 -83.83 -0.50 2.32 16 18 N -0.27 -6.54 2.80 -56.08 -0.16 -6.69 16 19 C -0.38 -8.62 7.88 -15.01 -0.12 -8.74 16 20 H 0.10 2.14 6.06 -52.49 -0.32 1.82 16 21 C 0.06 1.40 5.16 -17.47 -0.09 1.31 16 22 N -0.82 -19.36 10.61 55.50 0.59 -18.77 16 23 Si 0.92 16.16 29.56 -169.99 -5.02 11.13 16 24 H -0.27 -4.51 7.11 56.52 0.40 -4.10 16 25 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 26 H -0.26 -4.37 7.11 56.52 0.40 -3.96 16 27 C 0.47 8.03 8.21 36.31 0.30 8.33 16 28 O -0.43 -9.26 18.00 -18.41 -0.33 -9.59 16 29 O -0.35 -4.96 10.76 -38.48 -0.41 -5.38 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 33 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.10 1.08 7.50 -51.93 -0.39 0.69 16 35 H 0.42 7.80 4.16 -40.82 -0.17 7.63 16 36 H 0.13 2.91 8.06 -52.49 -0.42 2.48 16 37 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 38 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 40 H 0.12 2.73 6.90 -52.49 -0.36 2.37 16 41 H 0.28 6.26 8.31 -40.82 -0.34 5.92 16 LS Contribution 348.70 15.07 5.25 5.25 Total: -1.00 -30.83 348.70 -8.66 -39.49 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -4.57 Total: 14.86 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -3.81 Total: -3.51 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.16 Total: -39.25 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.66 Total: -27.97 kcal Atomic # 14 Polarization: 16.16 SS G_CDS: -5.02 Total: 11.13 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.83 -8.66 -39.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839769136.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.470 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds