Wall clock time and date at job start Tue Mar 31 2020 15:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09008 * 110.49135 * 2 1 4 4 C 1.54576 * 110.44195 * 237.51285 * 2 1 3 5 5 C 1.54492 * 102.14329 * 214.40688 * 4 2 1 6 6 H 1.09000 * 110.46656 * 256.45883 * 5 4 2 7 7 N 1.46504 * 110.36424 * 134.18451 * 5 4 2 8 8 C 1.34771 * 119.99999 * 154.20746 * 7 5 4 9 9 O 1.21663 * 120.00508 * 4.80647 * 8 7 5 10 10 C 1.46893 * 120.00091 * 184.80236 * 8 7 5 11 11 C 1.36116 * 125.43922 * 185.57263 * 10 8 7 12 12 C 1.41705 * 107.74940 * 180.02562 * 11 10 8 13 13 C 1.40024 * 133.35069 * 180.02562 * 12 11 10 14 14 C 1.36570 * 119.82933 * 179.97438 * 13 12 11 15 15 C 1.38854 * 120.60103 * 359.97438 * 14 13 12 16 16 C 1.37839 * 120.63625 * 0.02562 * 15 14 13 17 17 C 1.39094 * 119.80767 * 359.97438 * 16 15 14 18 18 N 1.37842 * 133.15490 * 180.34181 * 17 16 15 19 19 C 1.36890 * 125.62415 * 359.94376 * 18 17 16 20 20 H 1.07997 * 119.99835 * 129.24397 * 19 18 17 21 21 C 1.39009 * 119.99856 * 309.23972 * 19 18 17 22 22 N 1.31351 * 120.00266 * 4.56507 * 21 19 18 23 23 Si 1.86798 * 120.00004 * 184.56498 * 21 19 18 24 24 H 1.48501 * 109.47306 * 95.00088 * 23 21 19 25 25 H 1.48498 * 109.47287 * 215.00088 * 23 21 19 26 26 H 1.48504 * 109.47261 * 335.00212 * 23 21 19 27 27 C 1.51323 * 104.82784 * 15.34595 * 5 4 2 28 28 O 1.20821 * 125.09722 * 182.27731 * 27 5 4 29 29 O 1.34067 * 109.80887 * 2.31399 * 27 5 4 30 30 H 1.08999 * 109.47679 * 298.96506 * 1 2 3 31 31 H 1.09000 * 109.47623 * 58.96248 * 1 2 3 32 32 H 1.09005 * 109.47052 * 178.96401 * 1 2 3 33 33 H 1.09001 * 110.86734 * 96.24627 * 4 2 1 34 34 H 1.08994 * 111.04423 * 332.65081 * 4 2 1 35 35 H 0.97001 * 119.99966 * 334.20350 * 7 5 4 36 36 H 1.08002 * 126.12395 * 359.96796 * 11 10 8 37 37 H 1.08007 * 120.08265 * 359.97179 * 13 12 11 38 38 H 1.08001 * 119.70058 * 179.97438 * 14 13 12 39 39 H 1.08004 * 119.68148 * 179.97438 * 15 14 13 40 40 H 1.08000 * 120.09725 * 179.97438 * 16 15 14 41 41 H 0.96996 * 119.99953 * 184.99870 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9115 1.0211 0.0000 4 6 2.0698 -0.7780 -1.2218 5 6 3.3509 -1.4277 -0.6531 6 1 4.2354 -0.8932 -0.9998 7 7 3.4234 -2.8381 -1.0427 8 6 4.6195 -3.4534 -1.1268 9 8 5.6312 -2.8645 -0.7954 10 6 4.7017 -4.8351 -1.6185 11 6 5.8297 -5.5964 -1.6483 12 6 5.4846 -6.8588 -2.1918 13 6 6.2157 -8.0228 -2.4584 14 6 5.5896 -9.1094 -2.9993 15 6 4.2318 -9.0718 -3.2877 16 6 3.4910 -7.9374 -3.0342 17 6 4.1067 -6.8183 -2.4837 18 7 3.6449 -5.5715 -2.1199 19 6 2.3534 -5.1335 -2.2388 20 1 1.8549 -4.6859 -1.3918 21 6 1.6837 -5.2650 -3.4498 22 7 2.2571 -5.8894 -4.4531 23 14 -0.0318 -4.5537 -3.6504 24 1 0.0610 -3.2001 -4.2541 25 1 -0.8334 -5.4364 -4.5354 26 1 -0.6870 -4.4588 -2.3210 27 6 3.2148 -1.3024 0.8488 28 8 4.0414 -1.6614 1.6535 29 8 2.0392 -0.7340 1.1526 30 1 -0.3634 0.4977 0.8991 31 1 -0.3634 0.5298 -0.8805 32 1 -0.3633 -1.0276 -0.0186 33 1 2.3092 -0.0986 -2.0398 34 1 1.3598 -1.5386 -1.5463 35 1 2.6104 -3.3291 -1.2401 36 1 6.8119 -5.2925 -1.3178 37 1 7.2721 -8.0613 -2.2370 38 1 6.1556 -10.0060 -3.2044 39 1 3.7518 -9.9396 -3.7156 40 1 2.4356 -7.9176 -3.2624 41 1 1.8213 -5.9184 -5.3191 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839769136.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:27 Heat of formation + Delta-G solvation = -70.725814 kcal Electronic energy + Delta-G solvation = -28225.318713 eV Core-core repulsion = 24263.158424 eV Total energy + Delta-G solvation = -3962.160289 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -42.51383 -42.03562 -40.08751 -38.82987 -37.62387 -36.25218 -35.30397 -33.56803 -32.51741 -31.31533 -30.47192 -29.47058 -26.87589 -25.98523 -24.70799 -23.13783 -22.75137 -22.29067 -21.50355 -21.11697 -19.98193 -18.69033 -18.13289 -18.01089 -17.71935 -17.39111 -16.51606 -16.29755 -16.25088 -16.13405 -15.47692 -15.26983 -14.87448 -14.77420 -14.64809 -14.57121 -14.30090 -13.87316 -13.63061 -13.50829 -13.40973 -13.25092 -13.08255 -12.95155 -12.68429 -12.34333 -12.15640 -12.10281 -11.99737 -11.83438 -11.60179 -11.44880 -11.24806 -11.02048 -10.37979 -10.19805 -8.92613 -8.62931 -8.33580 -6.60363 0.07278 0.74497 1.11002 1.32255 1.39434 1.42420 1.53970 1.87920 2.08757 2.28135 2.44960 2.77282 2.79717 2.91695 3.14111 3.34597 3.58366 3.81251 3.91182 4.15930 4.20207 4.23460 4.42952 4.52492 4.64918 4.73111 4.75416 4.84486 4.85784 4.96456 4.99740 5.03894 5.16883 5.24657 5.27749 5.34938 5.44469 5.66639 5.74805 5.89456 5.96198 6.16182 6.19788 6.25009 6.40076 6.57118 6.84547 7.11187 7.47948 8.40179 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013165 B = 0.004895 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.397988 B = 5718.495963 C = 7448.375543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.076 3.924 3 H 0.132 0.868 4 C -0.150 4.150 5 C 0.080 3.920 6 H 0.127 0.873 7 N -0.703 5.703 8 C 0.596 3.404 9 O -0.567 6.567 10 C -0.043 4.043 11 C -0.176 4.176 12 C -0.157 4.157 13 C -0.094 4.094 14 C -0.152 4.152 15 C -0.136 4.136 16 C -0.078 4.078 17 C 0.083 3.917 18 N -0.276 5.276 19 C -0.397 4.397 20 H 0.110 0.890 21 C 0.026 3.974 22 N -0.851 5.851 23 Si 0.988 3.012 24 H -0.248 1.248 25 H -0.278 1.278 26 H -0.246 1.246 27 C 0.470 3.530 28 O -0.489 6.489 29 O -0.355 6.355 30 H 0.076 0.924 31 H 0.114 0.886 32 H 0.060 0.940 33 H 0.144 0.856 34 H 0.102 0.898 35 H 0.420 0.580 36 H 0.139 0.861 37 H 0.132 0.868 38 H 0.146 0.854 39 H 0.138 0.862 40 H 0.104 0.896 41 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.959 8.020 -0.540 11.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.022 3.978 3 H 0.150 0.850 4 C -0.188 4.188 5 C -0.027 4.027 6 H 0.145 0.855 7 N -0.365 5.365 8 C 0.385 3.615 9 O -0.447 6.447 10 C -0.158 4.158 11 C -0.204 4.204 12 C -0.162 4.162 13 C -0.113 4.113 14 C -0.171 4.171 15 C -0.157 4.157 16 C -0.098 4.098 17 C -0.031 4.031 18 N 0.058 4.942 19 C -0.523 4.523 20 H 0.127 0.873 21 C -0.185 4.185 22 N -0.480 5.480 23 Si 0.807 3.193 24 H -0.172 1.172 25 H -0.203 1.203 26 H -0.169 1.169 27 C 0.309 3.691 28 O -0.373 6.373 29 O -0.272 6.272 30 H 0.095 0.905 31 H 0.132 0.868 32 H 0.079 0.921 33 H 0.162 0.838 34 H 0.121 0.879 35 H 0.267 0.733 36 H 0.157 0.843 37 H 0.150 0.850 38 H 0.164 0.836 39 H 0.156 0.844 40 H 0.122 0.878 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.444 8.349 0.052 11.185 hybrid contribution -0.606 -0.158 -0.300 0.694 sum -8.049 8.191 -0.248 11.487 Atomic orbital electron populations 1.22006 0.89703 1.03940 1.05186 1.24228 0.97903 0.95932 0.79754 0.85027 1.23526 0.93768 1.01733 0.99750 1.22407 1.04156 0.84936 0.91179 0.85497 1.46474 1.10044 1.10914 1.69082 1.17320 0.83554 0.84578 0.76025 1.90719 1.36356 1.66483 1.51116 1.20415 0.89684 0.93126 1.12540 1.20654 0.97174 0.93781 1.08793 1.18427 0.94057 0.96042 1.07646 1.20471 0.99435 0.91414 0.99936 1.20747 0.94686 0.98898 1.02725 1.21041 0.94723 0.97367 1.02528 1.20154 0.99533 0.91126 0.98991 1.18802 0.93522 0.87241 1.03531 1.40096 1.05955 1.06721 1.41381 1.19778 0.87350 1.45935 0.99240 0.87297 1.26686 1.04076 0.93834 0.93902 1.70048 1.40887 1.34302 1.02746 0.85005 0.75020 0.79252 0.80052 1.17223 1.20293 1.16908 1.23932 0.79451 0.73650 0.92061 1.90695 1.41269 1.46853 1.58484 1.87050 1.33926 1.63101 1.43080 0.90481 0.86791 0.92132 0.83818 0.87917 0.73252 0.84276 0.85004 0.83597 0.84443 0.87814 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.57 71.98 0.69 -1.01 16 2 C 0.08 1.19 4.17 31.13 0.13 1.32 16 3 H 0.13 1.28 8.14 -2.38 -0.02 1.26 16 4 C -0.15 -2.71 6.45 31.64 0.20 -2.50 16 5 C 0.08 2.43 3.31 44.95 0.15 2.58 16 6 H 0.13 3.85 7.60 -2.39 -0.02 3.84 16 7 N -0.70 -27.16 5.01 -446.50 -2.24 -29.40 16 8 C 0.60 28.14 7.77 86.51 0.67 28.81 16 9 O -0.57 -28.82 16.53 -4.23 -0.07 -28.89 16 10 C -0.04 -2.20 6.77 39.91 0.27 -1.93 16 11 C -0.18 -8.66 10.55 22.63 0.24 -8.42 16 12 C -0.16 -7.54 6.16 -21.34 -0.13 -7.67 16 13 C -0.09 -3.73 10.06 22.31 0.22 -3.51 16 14 C -0.15 -5.41 9.97 22.03 0.22 -5.19 16 15 C -0.14 -5.24 10.02 22.32 0.22 -5.01 16 16 C -0.08 -3.62 8.60 22.38 0.19 -3.43 16 17 C 0.08 4.22 6.02 39.06 0.24 4.45 16 18 N -0.28 -14.02 2.80 -331.35 -0.93 -14.95 16 19 C -0.40 -18.47 7.88 84.09 0.66 -17.81 16 20 H 0.11 4.69 6.06 -2.91 -0.02 4.68 16 21 C 0.03 1.14 5.16 84.95 0.44 1.58 16 22 N -0.85 -40.99 10.61 21.67 0.23 -40.76 16 23 Si 0.99 31.94 29.56 68.60 2.03 33.97 16 24 H -0.25 -7.29 7.11 99.48 0.71 -6.58 16 25 H -0.28 -9.21 7.11 99.48 0.71 -8.50 16 26 H -0.25 -7.33 7.11 99.48 0.71 -6.62 16 27 C 0.47 16.35 8.21 71.43 0.59 16.94 16 28 O -0.49 -21.89 18.00 21.65 0.39 -21.50 16 29 O -0.35 -9.77 10.76 -50.19 -0.54 -10.31 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.84 8.13 -2.38 -0.02 0.82 16 33 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.10 1.87 7.50 -2.39 -0.02 1.85 16 35 H 0.42 15.80 4.16 -92.71 -0.39 15.42 16 36 H 0.14 6.40 8.06 -2.91 -0.02 6.38 16 37 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 38 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 39 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 40 H 0.10 4.97 6.90 -2.91 -0.02 4.95 16 41 H 0.29 12.75 8.31 -92.71 -0.77 11.98 16 Total: -1.00 -72.16 348.70 4.58 -67.59 By element: Atomic # 1 Polarization: 44.35 SS G_CDS: 0.70 Total: 45.05 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 5.00 Total: -0.79 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -2.93 Total: -85.10 kcal Atomic # 8 Polarization: -60.48 SS G_CDS: -0.22 Total: -60.70 kcal Atomic # 14 Polarization: 31.94 SS G_CDS: 2.03 Total: 33.97 kcal Total: -72.16 4.58 -67.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839769136.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.141 kcal (2) G-P(sol) polarization free energy of solvation -72.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds