Wall clock time and date at job start Tue Mar 31 2020 15:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53013 * 1 3 3 H 1.08997 * 110.19362 * 2 1 4 4 C 1.54866 * 110.25675 * 238.09808 * 2 1 3 5 5 C 1.54677 * 101.45180 * 215.60392 * 4 2 1 6 6 H 1.08996 * 110.53482 * 143.22496 * 5 4 2 7 7 N 1.46506 * 110.53077 * 265.85327 * 5 4 2 8 8 C 1.34781 * 119.99711 * 207.23664 * 7 5 4 9 9 O 1.21666 * 120.00238 * 4.75578 * 8 7 5 10 10 C 1.46888 * 119.99647 * 184.75329 * 8 7 5 11 11 C 1.36126 * 125.43440 * 185.67041 * 10 8 7 12 12 C 1.41704 * 107.74275 * 180.28152 * 11 10 8 13 13 C 1.40023 * 133.34796 * 179.70954 * 12 11 10 14 14 C 1.36577 * 119.83279 * 180.02562 * 13 12 11 15 15 C 1.38856 * 120.59983 * 359.97438 * 14 13 12 16 16 C 1.37848 * 120.62789 * 0.04120 * 15 14 13 17 17 C 1.39079 * 119.82036 * 359.95943 * 16 15 14 18 18 N 1.37835 * 133.16916 * 179.97438 * 17 16 15 19 19 C 1.36898 * 125.61485 * 0.02691 * 18 17 16 20 20 H 1.07997 * 119.99663 * 129.23267 * 19 18 17 21 21 C 1.39008 * 119.99965 * 309.23521 * 19 18 17 22 22 N 1.31350 * 120.00112 * 4.46591 * 21 19 18 23 23 Si 1.86806 * 119.99979 * 184.45974 * 21 19 18 24 24 H 1.48505 * 109.46643 * 65.05200 * 23 21 19 25 25 H 1.48494 * 109.47334 * 185.05149 * 23 21 19 26 26 H 1.48497 * 109.47136 * 305.05550 * 23 21 19 27 27 C 1.51323 * 104.06610 * 24.53816 * 5 4 2 28 28 O 1.20832 * 124.95165 * 163.87479 * 27 5 4 29 29 O 1.33833 * 110.10105 * 343.87219 * 27 5 4 30 30 H 1.08997 * 109.46357 * 299.58595 * 1 2 3 31 31 H 1.08998 * 109.46917 * 59.57948 * 1 2 3 32 32 H 1.08994 * 109.47146 * 179.58809 * 1 2 3 33 33 H 1.08998 * 111.11264 * 97.56179 * 4 2 1 34 34 H 1.09000 * 111.04061 * 333.61214 * 4 2 1 35 35 H 0.97001 * 119.99964 * 27.23703 * 7 5 4 36 36 H 1.07992 * 126.12535 * 359.97438 * 11 10 8 37 37 H 1.08007 * 120.08587 * 0.05014 * 13 12 11 38 38 H 1.07997 * 119.69930 * 180.02562 * 14 13 12 39 39 H 1.07994 * 119.68310 * 180.02562 * 15 14 13 40 40 H 1.07999 * 120.08588 * 179.97438 * 16 15 14 41 41 H 0.96999 * 119.99922 * 175.00239 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9064 1.0230 0.0000 4 6 2.0663 -0.7678 -1.2334 5 6 3.3290 -1.4438 -0.6493 6 1 3.4610 -2.4390 -1.0739 7 7 4.5145 -0.6194 -0.8973 8 6 5.7289 -1.1964 -0.9908 9 8 5.8310 -2.4083 -0.9559 10 6 6.9292 -0.3621 -1.1349 11 6 8.1915 -0.8253 -1.3473 12 6 9.0560 0.2951 -1.4207 13 6 10.4357 0.4334 -1.6154 14 6 10.9972 1.6782 -1.6383 15 6 10.2119 2.8110 -1.4707 16 6 8.8516 2.7002 -1.2773 17 6 8.2570 1.4432 -1.2501 18 7 6.9568 1.0186 -1.0799 19 6 5.8723 1.8305 -0.8829 20 1 4.9891 1.7090 -1.4924 21 6 5.9080 2.8112 0.1016 22 7 7.0116 3.0177 0.7833 23 14 4.3864 3.8357 0.4550 24 1 3.3144 2.9602 0.9932 25 1 4.7166 4.8845 1.4530 26 1 3.9186 4.4765 -0.8002 27 6 3.0454 -1.5330 0.8344 28 8 3.6458 -2.2354 1.6129 29 8 2.0326 -0.7204 1.1588 30 1 -0.3632 0.5074 0.8937 31 1 -0.3633 0.5203 -0.8862 32 1 -0.3633 -1.0276 -0.0074 33 1 2.3278 -0.0822 -2.0395 34 1 1.3469 -1.5124 -1.5740 35 1 4.4253 0.3416 -0.9942 36 1 8.4827 -1.8613 -1.4380 37 1 11.0543 -0.4421 -1.7474 38 1 12.0615 1.7824 -1.7890 39 1 10.6714 3.7881 -1.4918 40 1 8.2492 3.5872 -1.1474 41 1 7.0595 3.7489 1.4188 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839769138.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:34 Heat of formation + Delta-G solvation = -54.511889 kcal Electronic energy + Delta-G solvation = -28411.460470 eV Core-core repulsion = 24450.003270 eV Total energy + Delta-G solvation = -3961.457200 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.19459 -40.44072 -38.44414 -37.44293 -35.98028 -34.78287 -33.63710 -32.54047 -30.82108 -30.05398 -28.89072 -27.90101 -25.21386 -24.89094 -23.26847 -22.03650 -21.07785 -20.85908 -20.23341 -19.45201 -18.32856 -17.41073 -16.87565 -16.45622 -15.76802 -15.75790 -15.36361 -14.94473 -14.63711 -14.51976 -14.20413 -13.93477 -13.69478 -13.23977 -13.11533 -12.97505 -12.95172 -12.70096 -12.44485 -12.37645 -11.99328 -11.93175 -11.76623 -11.56754 -11.30671 -11.22895 -10.86507 -10.73792 -10.53040 -10.49151 -10.22425 -9.81520 -9.57340 -9.38033 -8.73902 -8.64474 -7.26307 -6.92559 -6.58508 -4.86826 1.75486 2.19848 2.70375 2.80841 2.85045 2.89075 3.01715 3.09280 3.57892 3.63548 3.93795 4.05392 4.24624 4.36026 4.46284 4.55891 4.72353 4.91185 5.02415 5.23651 5.27509 5.41800 5.51639 5.62367 5.72166 5.81668 5.84539 5.92806 6.11195 6.38219 6.53611 6.63026 6.64003 6.74393 6.84125 6.88133 7.05577 7.08060 7.41047 7.52434 7.60176 7.63009 7.81848 7.86205 7.98989 8.26469 8.54097 8.78022 9.20054 10.06944 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013869 B = 0.005017 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.395262 B = 5579.327799 C = 7024.397879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.073 3.927 3 H 0.101 0.899 4 C -0.160 4.160 5 C 0.083 3.917 6 H 0.131 0.869 7 N -0.714 5.714 8 C 0.601 3.399 9 O -0.541 6.541 10 C -0.016 4.016 11 C -0.158 4.158 12 C -0.135 4.135 13 C -0.086 4.086 14 C -0.160 4.160 15 C -0.145 4.145 16 C -0.053 4.053 17 C 0.116 3.884 18 N -0.266 5.266 19 C -0.382 4.382 20 H 0.102 0.898 21 C 0.063 3.937 22 N -0.815 5.815 23 Si 0.919 3.081 24 H -0.263 1.263 25 H -0.272 1.272 26 H -0.262 1.262 27 C 0.472 3.528 28 O -0.440 6.440 29 O -0.341 6.341 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.417 0.583 36 H 0.134 0.866 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.433 1.070 -5.312 10.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.017 3.983 3 H 0.119 0.881 4 C -0.198 4.198 5 C -0.025 4.025 6 H 0.149 0.851 7 N -0.378 5.378 8 C 0.392 3.608 9 O -0.418 6.418 10 C -0.130 4.130 11 C -0.186 4.186 12 C -0.140 4.140 13 C -0.105 4.105 14 C -0.179 4.179 15 C -0.166 4.166 16 C -0.073 4.073 17 C 0.001 3.999 18 N 0.069 4.931 19 C -0.509 4.509 20 H 0.119 0.881 21 C -0.152 4.152 22 N -0.443 5.443 23 Si 0.743 3.257 24 H -0.187 1.187 25 H -0.197 1.197 26 H -0.186 1.186 27 C 0.308 3.692 28 O -0.321 6.321 29 O -0.257 6.257 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.264 0.736 36 H 0.152 0.848 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.135 0.865 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.460 0.203 -4.385 10.429 hybrid contribution -0.605 1.147 0.349 1.343 sum -10.065 1.350 -4.036 10.928 Atomic orbital electron populations 1.21983 0.92031 1.03519 1.03497 1.23773 0.96004 0.96295 0.82186 0.88094 1.23469 0.96464 1.01462 0.98413 1.22156 0.87451 0.99951 0.92914 0.85119 1.46553 1.04724 1.12359 1.74128 1.17349 0.82011 0.86825 0.74650 1.90751 1.86309 1.13583 1.51162 1.20042 0.93991 0.83957 1.15019 1.20438 0.90239 0.97542 1.10343 1.18059 0.93483 0.93000 1.09456 1.20071 0.92621 0.96568 1.01207 1.20287 0.98384 0.92711 1.06510 1.20606 0.93268 0.97437 1.05250 1.20074 0.93590 0.95280 0.98325 1.18339 0.84814 0.93971 1.02766 1.39835 1.05154 1.01928 1.46205 1.19247 0.94586 1.17322 1.19756 0.88089 1.25741 0.98456 0.97435 0.93553 1.69877 1.26043 1.27376 1.20986 0.86105 0.80665 0.79582 0.79393 1.18725 1.19668 1.18594 1.23574 0.77331 0.77091 0.91161 1.90735 1.46952 1.36447 1.57936 1.86770 1.47929 1.53419 1.37609 0.91100 0.89948 0.91365 0.87310 0.87710 0.73556 0.84829 0.87681 0.87854 0.87618 0.86523 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.54 37.16 0.35 -0.83 16 2 C 0.07 0.81 4.26 -25.74 -0.11 0.70 16 3 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 4 C -0.16 -1.60 6.34 -24.87 -0.16 -1.76 16 5 C 0.08 1.29 3.37 -67.89 -0.23 1.06 16 6 H 0.13 2.01 7.43 -51.93 -0.39 1.63 16 7 N -0.71 -13.33 4.97 -55.01 -0.27 -13.60 16 8 C 0.60 13.49 7.77 -12.76 -0.10 13.39 16 9 O -0.54 -13.01 16.43 5.22 0.09 -12.92 16 10 C -0.02 -0.39 6.77 -82.25 -0.56 -0.94 16 11 C -0.16 -3.67 10.55 -39.02 -0.41 -4.08 16 12 C -0.14 -3.14 6.16 -106.89 -0.66 -3.80 16 13 C -0.09 -1.73 10.06 -39.51 -0.40 -2.13 16 14 C -0.16 -3.02 9.97 -39.95 -0.40 -3.42 16 15 C -0.15 -2.87 10.02 -39.50 -0.40 -3.27 16 16 C -0.05 -1.20 8.59 -39.41 -0.34 -1.54 16 17 C 0.12 2.82 6.02 -83.84 -0.51 2.31 16 18 N -0.27 -6.48 2.80 -56.08 -0.16 -6.63 16 19 C -0.38 -8.69 7.88 -15.00 -0.12 -8.81 16 20 H 0.10 2.04 6.05 -52.49 -0.32 1.72 16 21 C 0.06 1.43 5.16 -17.47 -0.09 1.34 16 22 N -0.82 -19.93 10.62 55.50 0.59 -19.34 16 23 Si 0.92 16.66 29.56 -169.99 -5.02 11.63 16 24 H -0.26 -4.60 7.11 56.52 0.40 -4.19 16 25 H -0.27 -5.05 7.11 56.52 0.40 -4.64 16 26 H -0.26 -4.47 7.11 56.52 0.40 -4.06 16 27 C 0.47 8.65 8.29 36.31 0.30 8.95 16 28 O -0.44 -9.92 18.00 -18.44 -0.33 -10.25 16 29 O -0.34 -5.42 10.63 -37.90 -0.40 -5.82 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.11 0.93 8.08 -51.93 -0.42 0.51 16 34 H 0.10 0.75 7.92 -51.93 -0.41 0.34 16 35 H 0.42 7.56 4.47 -40.82 -0.18 7.38 16 36 H 0.13 2.87 8.06 -52.49 -0.42 2.45 16 37 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 38 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.12 2.68 6.92 -52.49 -0.36 2.31 16 41 H 0.29 6.53 8.31 -40.82 -0.34 6.19 16 LS Contribution 349.05 15.07 5.26 5.26 Total: -1.00 -31.32 349.05 -8.66 -39.98 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -4.60 Total: 14.52 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -3.81 Total: -2.82 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.16 Total: -39.57 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.65 Total: -28.99 kcal Atomic # 14 Polarization: 16.66 SS G_CDS: -5.02 Total: 11.63 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.32 -8.66 -39.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839769138.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.534 kcal (2) G-P(sol) polarization free energy of solvation -31.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds