Wall clock time and date at job start Tue Mar 31 2020 15:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53013 * 1 3 3 H 1.08997 * 110.19362 * 2 1 4 4 C 1.54866 * 110.25675 * 238.09808 * 2 1 3 5 5 C 1.54677 * 101.45180 * 215.60392 * 4 2 1 6 6 H 1.08996 * 110.53482 * 143.22496 * 5 4 2 7 7 N 1.46506 * 110.53077 * 265.85327 * 5 4 2 8 8 C 1.34781 * 119.99711 * 207.23664 * 7 5 4 9 9 O 1.21666 * 120.00238 * 4.75578 * 8 7 5 10 10 C 1.46888 * 119.99647 * 184.75329 * 8 7 5 11 11 C 1.36126 * 125.43440 * 185.67041 * 10 8 7 12 12 C 1.41704 * 107.74275 * 180.28152 * 11 10 8 13 13 C 1.40023 * 133.34796 * 179.70954 * 12 11 10 14 14 C 1.36577 * 119.83279 * 180.02562 * 13 12 11 15 15 C 1.38856 * 120.59983 * 359.97438 * 14 13 12 16 16 C 1.37848 * 120.62789 * 0.04120 * 15 14 13 17 17 C 1.39079 * 119.82036 * 359.95943 * 16 15 14 18 18 N 1.37835 * 133.16916 * 179.97438 * 17 16 15 19 19 C 1.36898 * 125.61485 * 0.02691 * 18 17 16 20 20 H 1.07997 * 119.99663 * 129.23267 * 19 18 17 21 21 C 1.39008 * 119.99965 * 309.23521 * 19 18 17 22 22 N 1.31350 * 120.00112 * 4.46591 * 21 19 18 23 23 Si 1.86806 * 119.99979 * 184.45974 * 21 19 18 24 24 H 1.48505 * 109.46643 * 65.05200 * 23 21 19 25 25 H 1.48494 * 109.47334 * 185.05149 * 23 21 19 26 26 H 1.48497 * 109.47136 * 305.05550 * 23 21 19 27 27 C 1.51323 * 104.06610 * 24.53816 * 5 4 2 28 28 O 1.20832 * 124.95165 * 163.87479 * 27 5 4 29 29 O 1.33833 * 110.10105 * 343.87219 * 27 5 4 30 30 H 1.08997 * 109.46357 * 299.58595 * 1 2 3 31 31 H 1.08998 * 109.46917 * 59.57948 * 1 2 3 32 32 H 1.08994 * 109.47146 * 179.58809 * 1 2 3 33 33 H 1.08998 * 111.11264 * 97.56179 * 4 2 1 34 34 H 1.09000 * 111.04061 * 333.61214 * 4 2 1 35 35 H 0.97001 * 119.99964 * 27.23703 * 7 5 4 36 36 H 1.07992 * 126.12535 * 359.97438 * 11 10 8 37 37 H 1.08007 * 120.08587 * 0.05014 * 13 12 11 38 38 H 1.07997 * 119.69930 * 180.02562 * 14 13 12 39 39 H 1.07994 * 119.68310 * 180.02562 * 15 14 13 40 40 H 1.07999 * 120.08588 * 179.97438 * 16 15 14 41 41 H 0.96999 * 119.99922 * 175.00239 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9064 1.0230 0.0000 4 6 2.0663 -0.7678 -1.2334 5 6 3.3290 -1.4438 -0.6493 6 1 3.4610 -2.4390 -1.0739 7 7 4.5145 -0.6194 -0.8973 8 6 5.7289 -1.1964 -0.9908 9 8 5.8310 -2.4083 -0.9559 10 6 6.9292 -0.3621 -1.1349 11 6 8.1915 -0.8253 -1.3473 12 6 9.0560 0.2951 -1.4207 13 6 10.4357 0.4334 -1.6154 14 6 10.9972 1.6782 -1.6383 15 6 10.2119 2.8110 -1.4707 16 6 8.8516 2.7002 -1.2773 17 6 8.2570 1.4432 -1.2501 18 7 6.9568 1.0186 -1.0799 19 6 5.8723 1.8305 -0.8829 20 1 4.9891 1.7090 -1.4924 21 6 5.9080 2.8112 0.1016 22 7 7.0116 3.0177 0.7833 23 14 4.3864 3.8357 0.4550 24 1 3.3144 2.9602 0.9932 25 1 4.7166 4.8845 1.4530 26 1 3.9186 4.4765 -0.8002 27 6 3.0454 -1.5330 0.8344 28 8 3.6458 -2.2354 1.6129 29 8 2.0326 -0.7204 1.1588 30 1 -0.3632 0.5074 0.8937 31 1 -0.3633 0.5203 -0.8862 32 1 -0.3633 -1.0276 -0.0074 33 1 2.3278 -0.0822 -2.0395 34 1 1.3469 -1.5124 -1.5740 35 1 4.4253 0.3416 -0.9942 36 1 8.4827 -1.8613 -1.4380 37 1 11.0543 -0.4421 -1.7474 38 1 12.0615 1.7824 -1.7890 39 1 10.6714 3.7881 -1.4918 40 1 8.2492 3.5872 -1.1474 41 1 7.0595 3.7489 1.4188 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839769138.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:32 Heat of formation + Delta-G solvation = -72.854204 kcal Electronic energy + Delta-G solvation = -28412.255853 eV Core-core repulsion = 24450.003270 eV Total energy + Delta-G solvation = -3962.252583 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.56144 -42.04787 -40.10046 -38.88045 -37.62697 -36.25538 -35.31946 -33.58560 -32.51878 -31.34003 -30.48064 -29.47205 -26.88189 -25.99629 -24.82677 -23.12738 -22.75008 -22.17689 -21.79105 -21.15186 -19.98073 -18.74136 -18.33580 -17.95563 -17.44098 -17.08859 -16.73578 -16.50653 -16.23052 -16.06787 -15.63056 -15.33871 -14.88836 -14.82477 -14.71426 -14.60768 -14.30395 -13.81257 -13.65253 -13.54202 -13.41508 -13.25616 -13.04491 -12.88859 -12.72979 -12.36254 -12.25825 -12.21375 -11.95671 -11.87487 -11.56088 -11.44821 -11.29669 -11.02761 -10.37863 -10.24430 -8.96443 -8.64535 -8.28400 -6.63121 0.05502 0.74784 1.10552 1.32062 1.33641 1.40827 1.47634 1.93339 2.04678 2.18138 2.40030 2.75627 2.77948 2.88662 3.08496 3.34832 3.49579 3.87642 3.90027 4.14760 4.20923 4.26909 4.43145 4.52514 4.62403 4.73507 4.74735 4.82948 4.85007 4.96622 4.99614 5.02953 5.15439 5.20198 5.26514 5.34691 5.44337 5.69132 5.73787 5.88908 5.95890 6.14981 6.18869 6.23352 6.38509 6.56509 6.83932 7.08410 7.47416 8.38284 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013869 B = 0.005017 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.395262 B = 5579.327799 C = 7024.397879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.059 3.941 3 H 0.103 0.897 4 C -0.141 4.141 5 C 0.078 3.922 6 H 0.130 0.870 7 N -0.702 5.702 8 C 0.597 3.403 9 O -0.568 6.568 10 C -0.044 4.044 11 C -0.173 4.173 12 C -0.157 4.157 13 C -0.093 4.093 14 C -0.152 4.152 15 C -0.135 4.135 16 C -0.079 4.079 17 C 0.085 3.915 18 N -0.277 5.277 19 C -0.397 4.397 20 H 0.123 0.877 21 C 0.020 3.980 22 N -0.856 5.856 23 Si 0.984 3.016 24 H -0.251 1.251 25 H -0.281 1.281 26 H -0.238 1.238 27 C 0.468 3.532 28 O -0.498 6.498 29 O -0.353 6.353 30 H 0.067 0.933 31 H 0.115 0.885 32 H 0.075 0.925 33 H 0.132 0.868 34 H 0.143 0.857 35 H 0.420 0.580 36 H 0.141 0.859 37 H 0.132 0.868 38 H 0.146 0.854 39 H 0.138 0.862 40 H 0.104 0.896 41 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.847 2.542 -6.833 13.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.005 3.995 3 H 0.121 0.879 4 C -0.178 4.178 5 C -0.029 4.029 6 H 0.148 0.852 7 N -0.365 5.365 8 C 0.387 3.613 9 O -0.447 6.447 10 C -0.158 4.158 11 C -0.202 4.202 12 C -0.162 4.162 13 C -0.112 4.112 14 C -0.171 4.171 15 C -0.156 4.156 16 C -0.099 4.099 17 C -0.029 4.029 18 N 0.057 4.943 19 C -0.523 4.523 20 H 0.140 0.860 21 C -0.191 4.191 22 N -0.485 5.485 23 Si 0.803 3.197 24 H -0.175 1.175 25 H -0.207 1.207 26 H -0.161 1.161 27 C 0.308 3.692 28 O -0.383 6.383 29 O -0.268 6.268 30 H 0.086 0.914 31 H 0.133 0.867 32 H 0.094 0.906 33 H 0.150 0.850 34 H 0.161 0.839 35 H 0.268 0.732 36 H 0.159 0.841 37 H 0.150 0.850 38 H 0.164 0.836 39 H 0.156 0.844 40 H 0.122 0.878 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.924 1.705 -5.946 12.554 hybrid contribution -0.095 0.749 0.810 1.107 sum -11.019 2.454 -5.136 12.403 Atomic orbital electron populations 1.22036 0.88926 1.04537 1.04933 1.24291 0.98357 0.95865 0.80989 0.87878 1.23621 0.93778 1.02217 0.98163 1.22441 0.88466 1.00412 0.91595 0.85223 1.46421 1.04678 1.12694 1.72672 1.17331 0.82900 0.86394 0.74715 1.90716 1.86831 1.14431 1.52753 1.20412 0.95015 0.84433 1.15918 1.20672 0.90618 0.98105 1.10773 1.18437 0.94965 0.92548 1.10239 1.20476 0.91660 0.98480 1.00581 1.20753 1.00366 0.91601 1.04387 1.21051 0.92211 0.99500 1.02797 1.20152 0.94930 0.94302 1.00491 1.18803 0.85305 0.95048 1.03754 1.40074 1.05698 1.02090 1.46392 1.19824 0.95026 1.17238 1.20261 0.86026 1.26738 1.01204 0.98324 0.92822 1.70020 1.28396 1.28171 1.21868 0.85144 0.76994 0.77783 0.79825 1.17532 1.20651 1.16084 1.24055 0.77011 0.76296 0.91865 1.90690 1.49101 1.38974 1.59570 1.86756 1.46881 1.52824 1.40385 0.91435 0.86669 0.90631 0.84971 0.83899 0.73222 0.84116 0.84969 0.83617 0.84432 0.87799 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.54 71.99 0.69 -1.00 16 2 C 0.06 1.14 4.26 31.24 0.13 1.27 16 3 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 4 C -0.14 -2.33 6.34 31.80 0.20 -2.12 16 5 C 0.08 2.36 3.37 45.01 0.15 2.51 16 6 H 0.13 3.97 7.43 -2.39 -0.02 3.96 16 7 N -0.70 -26.28 4.97 -446.18 -2.22 -28.50 16 8 C 0.60 27.67 7.77 86.51 0.67 28.34 16 9 O -0.57 -28.39 16.43 -4.24 -0.07 -28.46 16 10 C -0.04 -2.18 6.77 39.91 0.27 -1.91 16 11 C -0.17 -8.39 10.55 22.63 0.24 -8.15 16 12 C -0.16 -7.45 6.16 -21.33 -0.13 -7.58 16 13 C -0.09 -3.66 10.06 22.31 0.22 -3.44 16 14 C -0.15 -5.36 9.97 22.03 0.22 -5.14 16 15 C -0.14 -5.14 10.02 22.33 0.22 -4.92 16 16 C -0.08 -3.61 8.59 22.38 0.19 -3.42 16 17 C 0.09 4.26 6.02 39.06 0.24 4.50 16 18 N -0.28 -13.89 2.80 -331.35 -0.93 -14.81 16 19 C -0.40 -18.25 7.88 84.09 0.66 -17.59 16 20 H 0.12 4.83 6.05 -2.91 -0.02 4.81 16 21 C 0.02 0.90 5.16 84.95 0.44 1.33 16 22 N -0.86 -42.99 10.62 21.67 0.23 -42.76 16 23 Si 0.98 33.28 29.56 68.60 2.03 35.31 16 24 H -0.25 -7.95 7.11 99.48 0.71 -7.25 16 25 H -0.28 -9.88 7.11 99.48 0.71 -9.17 16 26 H -0.24 -7.11 7.11 99.48 0.71 -6.40 16 27 C 0.47 17.39 8.29 71.43 0.59 17.98 16 28 O -0.50 -23.53 18.00 21.65 0.39 -23.14 16 29 O -0.35 -10.91 10.63 -47.98 -0.51 -11.42 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.13 1.67 8.08 -2.39 -0.02 1.65 16 34 H 0.14 1.36 7.92 -2.39 -0.02 1.34 16 35 H 0.42 15.00 4.47 -92.71 -0.41 14.58 16 36 H 0.14 6.33 8.06 -2.91 -0.02 6.30 16 37 H 0.13 4.36 8.06 -2.91 -0.02 4.33 16 38 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 39 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 40 H 0.10 4.91 6.92 -2.91 -0.02 4.89 16 41 H 0.28 13.41 8.31 -92.71 -0.77 12.64 16 Total: -1.00 -73.80 349.05 4.60 -69.20 By element: Atomic # 1 Polarization: 43.26 SS G_CDS: 0.67 Total: 43.93 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 5.01 Total: 0.66 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -2.92 Total: -86.08 kcal Atomic # 8 Polarization: -62.83 SS G_CDS: -0.19 Total: -63.02 kcal Atomic # 14 Polarization: 33.28 SS G_CDS: 2.03 Total: 35.31 kcal Total: -73.80 4.60 -69.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839769138.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.654 kcal (2) G-P(sol) polarization free energy of solvation -73.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds