Wall clock time and date at job start Tue Mar 31 2020 16:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34950 * 126.03811 * 2 1 4 4 C 1.35317 * 107.74708 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.04159 * 179.97438 * 4 3 2 6 6 H 1.09007 * 115.54622 * 334.33697 * 5 4 3 7 7 C 1.52998 * 117.50291 * 188.62506 * 5 4 3 8 8 C 1.52998 * 117.49667 * 120.00068 * 5 4 3 9 9 H 1.08992 * 117.49908 * 359.97438 * 8 5 4 10 10 C 1.50702 * 117.49836 * 214.97949 * 8 5 4 11 11 O 1.20825 * 120.00197 * 0.02562 * 10 8 5 12 12 O 1.34263 * 119.99774 * 180.02562 * 10 8 5 13 13 C 1.35923 * 116.99821 * 175.01186 * 12 10 8 14 14 C 1.38822 * 120.02773 * 255.30719 * 13 12 10 15 15 C 1.38180 * 120.09120 * 180.02562 * 14 13 12 16 16 C 1.38159 * 120.12122 * 0.02562 * 15 14 13 17 17 C 1.38899 * 120.03684 * 359.97438 * 16 15 14 18 18 O 1.35757 * 120.03774 * 179.97438 * 17 16 15 19 19 C 1.34829 * 117.00050 * 185.57753 * 18 17 16 20 20 H 1.08004 * 119.99816 * 354.91889 * 19 18 17 21 21 C 1.38646 * 120.00207 * 174.91397 * 19 18 17 22 22 N 1.31561 * 119.99892 * 0.28236 * 21 19 18 23 23 Si 1.86802 * 120.00215 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46856 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47126 * 120.00496 * 23 21 19 26 26 H 1.48500 * 109.47058 * 240.00260 * 23 21 19 27 27 C 1.38584 * 120.02017 * 75.60488 * 13 12 10 28 28 C 1.39868 * 107.91991 * 0.26767 * 4 3 2 29 29 N 1.30834 * 108.20309 * 359.54988 * 28 4 3 30 30 H 1.08998 * 109.46955 * 89.99893 * 1 2 3 31 31 H 1.08998 * 109.47117 * 210.00058 * 1 2 3 32 32 H 1.09004 * 109.47148 * 329.99839 * 1 2 3 33 33 H 1.08003 * 126.12444 * 0.02562 * 3 2 1 34 34 H 1.08997 * 117.49812 * 145.01735 * 7 5 4 35 35 H 1.08998 * 117.49286 * 0.02562 * 7 5 4 36 36 H 1.08005 * 119.95399 * 359.97438 * 14 13 12 37 37 H 1.07996 * 119.94674 * 180.02562 * 15 14 13 38 38 H 1.07998 * 119.98605 * 179.97438 * 16 15 14 39 39 H 0.97000 * 120.00011 * 359.71968 * 22 21 19 40 40 H 1.07995 * 120.05830 * 359.97438 * 27 13 12 41 41 H 1.07998 * 125.89778 * 179.73353 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7680 1.5453 0.0002 6 1 4.6331 2.5393 -0.4264 7 6 6.1244 0.8670 -0.2025 8 6 5.7373 1.4067 1.1759 9 1 5.4893 0.6803 1.9497 10 6 6.4330 2.6547 1.6549 11 8 6.2157 3.7130 1.1140 12 8 7.2944 2.5905 2.6829 13 6 7.9655 3.7298 2.9976 14 6 9.3031 3.8661 2.6520 15 6 9.9868 5.0236 2.9718 16 6 9.3418 6.0485 3.6368 17 6 8.0036 5.9176 3.9851 18 8 7.3699 6.9245 4.6390 19 6 6.1074 6.6888 5.0495 20 1 5.6165 5.7645 4.7825 21 6 5.4394 7.6328 5.8143 22 7 6.0355 8.7610 6.1348 23 14 3.6906 7.3058 6.3836 24 1 3.2495 5.9767 5.8895 25 1 3.6417 7.3229 7.8677 26 1 2.7904 8.3578 5.8466 27 6 7.3166 4.7537 3.6692 28 6 3.5346 -0.7321 -0.0053 29 7 2.2892 -1.1328 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 1.9281 2.1194 0.0004 34 1 6.8821 1.4147 -0.7628 35 1 6.1311 -0.2147 -0.3361 36 1 9.8103 3.0661 2.1332 37 1 11.0272 5.1274 2.7014 38 1 9.8783 6.9521 3.8860 39 1 6.9437 8.9306 5.8395 40 1 6.2773 4.6477 3.9428 41 1 4.4054 -1.3710 -0.0104 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841343505.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:34 Heat of formation + Delta-G solvation = 30.303555 kcal Electronic energy + Delta-G solvation = -26290.469088 eV Core-core repulsion = 22332.689762 eV Total energy + Delta-G solvation = -3957.779327 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.59557 -40.93129 -39.03055 -37.86607 -36.41812 -35.73847 -33.34017 -32.30624 -30.52190 -29.83506 -28.94625 -27.25306 -25.54530 -24.84443 -23.24617 -22.20462 -21.70115 -21.30111 -20.38938 -19.85100 -18.62491 -18.07275 -17.28647 -17.00262 -16.06670 -15.97990 -15.70875 -15.05408 -14.93510 -14.71459 -14.40106 -14.28161 -13.87156 -13.75622 -13.44028 -13.37725 -13.14865 -12.97555 -12.84325 -12.51274 -12.18314 -11.74807 -11.49857 -11.24646 -11.16616 -10.91862 -10.80166 -10.72319 -10.59911 -10.39013 -10.34813 -10.29307 -9.72491 -9.56439 -8.82063 -8.57741 -8.22074 -7.43906 -6.81904 -4.11300 1.53792 1.70583 2.13382 2.16984 2.21111 2.42040 3.05623 3.21525 3.29370 3.39400 3.71740 4.07283 4.14087 4.40680 4.50506 4.55090 4.64281 4.68917 4.77493 4.89174 4.96543 5.03389 5.07781 5.09435 5.15255 5.35902 5.44025 5.52291 5.68477 5.73306 5.76441 5.90707 6.00951 6.09857 6.27810 6.31599 6.46062 6.66613 6.85178 6.96775 7.02724 7.08178 7.37828 7.48079 7.51316 8.14264 8.34984 8.86235 9.52361 10.62298 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.010308 B = 0.003174 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.641934 B = 8819.597853 C =11225.209699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.377 5.377 3 C 0.071 3.929 4 C -0.211 4.211 5 C -0.036 4.036 6 H 0.126 0.874 7 C -0.138 4.138 8 C -0.157 4.157 9 H 0.136 0.864 10 C 0.484 3.516 11 O -0.484 6.484 12 O -0.292 6.292 13 C 0.121 3.879 14 C -0.210 4.210 15 C -0.065 4.065 16 C -0.190 4.190 17 C 0.166 3.834 18 O -0.195 6.195 19 C -0.472 4.472 20 H 0.084 0.916 21 C 0.012 3.988 22 N -0.879 5.879 23 Si 1.101 2.899 24 H -0.284 1.284 25 H -0.278 1.278 26 H -0.278 1.278 27 C -0.225 4.225 28 C 0.056 3.944 29 N -0.298 5.298 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.178 0.822 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.283 0.717 40 H 0.133 0.867 41 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.725 -17.753 -12.839 22.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.159 5.159 3 C -0.075 4.075 4 C -0.222 4.222 5 C -0.055 4.055 6 H 0.144 0.856 7 C -0.175 4.175 8 C -0.176 4.176 9 H 0.154 0.846 10 C 0.328 3.672 11 O -0.369 6.369 12 O -0.207 6.207 13 C 0.081 3.919 14 C -0.229 4.229 15 C -0.083 4.083 16 C -0.209 4.209 17 C 0.112 3.888 18 O -0.099 6.099 19 C -0.548 4.548 20 H 0.101 0.899 21 C -0.193 4.193 22 N -0.511 5.511 23 Si 0.925 3.075 24 H -0.209 1.209 25 H -0.203 1.203 26 H -0.204 1.204 27 C -0.245 4.245 28 C -0.130 4.130 29 N -0.119 5.119 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.195 0.805 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.134 0.866 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.093 0.907 40 H 0.151 0.849 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -8.008 -17.488 -12.029 22.687 hybrid contribution 1.748 0.027 -0.749 1.902 sum -6.260 -17.462 -12.779 22.525 Atomic orbital electron populations 1.21887 0.73966 1.04716 1.03444 1.48467 1.06769 1.03805 1.56818 1.22351 0.90664 0.93632 1.00889 1.19195 0.92896 0.93100 1.17035 1.20316 0.87269 0.99744 0.98188 0.85564 1.23129 0.98176 1.01573 0.94656 1.21849 1.04637 0.96966 0.94191 0.84604 1.22869 0.77137 0.89961 0.77266 1.90714 1.60464 1.31014 1.54738 1.84494 1.51869 1.36565 1.47783 1.18227 0.90665 0.85071 0.97977 1.20526 0.93803 0.99648 1.08937 1.20481 0.98750 0.92145 0.96928 1.20313 0.92525 1.01067 1.06987 1.18965 0.91237 0.87044 0.91512 1.83683 1.28622 1.34306 1.63327 1.22284 0.87582 1.08231 1.36665 0.89872 1.26548 1.06407 0.92322 0.94071 1.70515 1.15817 1.23089 1.41661 0.83016 0.71712 0.75826 0.76955 1.20914 1.20349 1.20358 1.21221 1.01865 0.94390 1.07020 1.23761 0.95267 0.94324 0.99664 1.77365 1.01567 1.08346 1.24609 0.90660 0.89229 0.89245 0.80510 0.87541 0.87060 0.86582 0.85879 0.86026 0.90663 0.84937 0.79961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.53 11.47 59.84 0.69 1.22 16 2 N -0.38 -3.54 4.01 -68.16 -0.27 -3.82 16 3 C 0.07 0.66 11.40 -17.22 -0.20 0.47 16 4 C -0.21 -2.12 5.76 -105.05 -0.61 -2.72 16 5 C -0.04 -0.38 5.76 -91.77 -0.53 -0.90 16 6 H 0.13 1.45 7.67 -51.93 -0.40 1.05 16 7 C -0.14 -1.23 9.73 -26.73 -0.26 -1.49 16 8 C -0.16 -1.85 6.00 -91.77 -0.55 -2.41 16 9 H 0.14 1.43 8.14 -51.93 -0.42 1.01 16 10 C 0.48 8.18 7.60 36.01 0.27 8.46 16 11 O -0.48 -9.75 15.70 -18.75 -0.29 -10.05 16 12 O -0.29 -5.41 10.03 -23.61 -0.24 -5.64 16 13 C 0.12 2.53 5.18 -39.24 -0.20 2.32 16 14 C -0.21 -3.88 9.98 -39.39 -0.39 -4.28 16 15 C -0.06 -1.16 10.03 -39.63 -0.40 -1.56 16 16 C -0.19 -4.01 9.99 -39.37 -0.39 -4.40 16 17 C 0.17 4.16 6.65 -39.13 -0.26 3.90 16 18 O -0.20 -5.60 9.16 0.03 0.00 -5.60 16 19 C -0.47 -13.61 9.49 30.88 0.29 -13.31 16 20 H 0.08 2.32 5.20 -52.48 -0.27 2.05 16 21 C 0.01 0.34 5.49 -17.52 -0.10 0.25 16 22 N -0.88 -26.36 13.70 55.48 0.76 -25.60 16 23 Si 1.10 24.20 29.92 -169.99 -5.09 19.12 16 24 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 26 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 27 C -0.23 -5.37 8.60 -39.25 -0.34 -5.71 16 28 C 0.06 0.55 11.35 -17.37 -0.20 0.35 16 29 N -0.30 -3.33 12.58 30.62 0.39 -2.94 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.18 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.11 0.70 6.97 -51.93 -0.36 0.34 16 36 H 0.12 1.80 8.06 -52.48 -0.42 1.38 16 37 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.12 2.38 8.06 -52.49 -0.42 1.95 16 39 H 0.28 8.65 7.97 -40.82 -0.33 8.33 16 40 H 0.13 3.31 5.63 -52.49 -0.30 3.01 16 41 H 0.18 1.25 7.19 -52.49 -0.38 0.87 16 LS Contribution 364.48 15.07 5.49 5.49 Total: -1.00 -35.86 364.48 -7.05 -42.91 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -4.63 Total: 5.96 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: -3.17 Total: -19.83 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 0.87 Total: -32.36 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.53 Total: -21.29 kcal Atomic # 14 Polarization: 24.20 SS G_CDS: -5.09 Total: 19.12 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.86 -7.05 -42.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343505.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.211 kcal (2) G-P(sol) polarization free energy of solvation -35.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds