Wall clock time and date at job start Tue Mar 31 2020 16:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34950 * 126.03811 * 2 1 4 4 C 1.35317 * 107.74708 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.04159 * 179.97438 * 4 3 2 6 6 H 1.09007 * 115.54622 * 334.33697 * 5 4 3 7 7 C 1.52998 * 117.50291 * 188.62506 * 5 4 3 8 8 C 1.52998 * 117.49667 * 120.00068 * 5 4 3 9 9 H 1.08992 * 117.49908 * 359.97438 * 8 5 4 10 10 C 1.50702 * 117.49836 * 214.97949 * 8 5 4 11 11 O 1.20825 * 120.00197 * 0.02562 * 10 8 5 12 12 O 1.34263 * 119.99774 * 180.02562 * 10 8 5 13 13 C 1.35923 * 116.99821 * 175.01186 * 12 10 8 14 14 C 1.38822 * 120.02773 * 255.30719 * 13 12 10 15 15 C 1.38180 * 120.09120 * 180.02562 * 14 13 12 16 16 C 1.38159 * 120.12122 * 0.02562 * 15 14 13 17 17 C 1.38899 * 120.03684 * 359.97438 * 16 15 14 18 18 O 1.35757 * 120.03774 * 179.97438 * 17 16 15 19 19 C 1.34829 * 117.00050 * 185.57753 * 18 17 16 20 20 H 1.08004 * 119.99816 * 354.91889 * 19 18 17 21 21 C 1.38646 * 120.00207 * 174.91397 * 19 18 17 22 22 N 1.31561 * 119.99892 * 0.28236 * 21 19 18 23 23 Si 1.86802 * 120.00215 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46856 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47126 * 120.00496 * 23 21 19 26 26 H 1.48500 * 109.47058 * 240.00260 * 23 21 19 27 27 C 1.38584 * 120.02017 * 75.60488 * 13 12 10 28 28 C 1.39868 * 107.91991 * 0.26767 * 4 3 2 29 29 N 1.30834 * 108.20309 * 359.54988 * 28 4 3 30 30 H 1.08998 * 109.46955 * 89.99893 * 1 2 3 31 31 H 1.08998 * 109.47117 * 210.00058 * 1 2 3 32 32 H 1.09004 * 109.47148 * 329.99839 * 1 2 3 33 33 H 1.08003 * 126.12444 * 0.02562 * 3 2 1 34 34 H 1.08997 * 117.49812 * 145.01735 * 7 5 4 35 35 H 1.08998 * 117.49286 * 0.02562 * 7 5 4 36 36 H 1.08005 * 119.95399 * 359.97438 * 14 13 12 37 37 H 1.07996 * 119.94674 * 180.02562 * 15 14 13 38 38 H 1.07998 * 119.98605 * 179.97438 * 16 15 14 39 39 H 0.97000 * 120.00011 * 359.71968 * 22 21 19 40 40 H 1.07995 * 120.05830 * 359.97438 * 27 13 12 41 41 H 1.07998 * 125.89778 * 179.73353 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7680 1.5453 0.0002 6 1 4.6331 2.5393 -0.4264 7 6 6.1244 0.8670 -0.2025 8 6 5.7373 1.4067 1.1759 9 1 5.4893 0.6803 1.9497 10 6 6.4330 2.6547 1.6549 11 8 6.2157 3.7130 1.1140 12 8 7.2944 2.5905 2.6829 13 6 7.9655 3.7298 2.9976 14 6 9.3031 3.8661 2.6520 15 6 9.9868 5.0236 2.9718 16 6 9.3418 6.0485 3.6368 17 6 8.0036 5.9176 3.9851 18 8 7.3699 6.9245 4.6390 19 6 6.1074 6.6888 5.0495 20 1 5.6165 5.7645 4.7825 21 6 5.4394 7.6328 5.8143 22 7 6.0355 8.7610 6.1348 23 14 3.6906 7.3058 6.3836 24 1 3.2495 5.9767 5.8895 25 1 3.6417 7.3229 7.8677 26 1 2.7904 8.3578 5.8466 27 6 7.3166 4.7537 3.6692 28 6 3.5346 -0.7321 -0.0053 29 7 2.2892 -1.1328 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 1.9281 2.1194 0.0004 34 1 6.8821 1.4147 -0.7628 35 1 6.1311 -0.2147 -0.3361 36 1 9.8103 3.0661 2.1332 37 1 11.0272 5.1274 2.7014 38 1 9.8783 6.9521 3.8860 39 1 6.9437 8.9306 5.8395 40 1 6.2773 4.6477 3.9428 41 1 4.4054 -1.3710 -0.0104 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841343505.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:31 Heat of formation + Delta-G solvation = 8.700722 kcal Electronic energy + Delta-G solvation = -26291.405858 eV Core-core repulsion = 22332.689762 eV Total energy + Delta-G solvation = -3958.716096 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 4.45 seconds Orbital eigenvalues (eV) -42.53342 -42.14918 -40.76460 -39.21706 -37.80225 -37.24176 -34.38298 -33.94853 -31.61131 -31.14850 -30.67651 -27.92990 -27.18280 -26.40216 -23.97379 -23.73650 -23.37153 -21.97994 -21.67217 -20.67639 -20.52607 -19.60457 -18.62101 -17.77285 -17.69250 -17.56448 -16.82949 -16.46534 -16.32863 -15.80961 -15.69441 -15.52077 -15.41781 -15.26187 -14.97321 -14.67275 -14.11950 -13.67140 -13.53572 -13.43841 -13.29202 -13.24108 -12.96728 -12.85748 -12.56111 -12.44605 -12.02384 -12.00273 -11.98794 -11.82901 -11.62739 -11.52747 -11.44327 -10.84181 -10.41009 -9.90367 -9.31139 -9.24216 -9.03106 -6.34011 0.04735 0.45701 0.83038 0.94691 1.41717 1.49548 1.56590 1.65410 1.70298 1.83355 2.27074 2.68884 2.86812 2.99562 3.18348 3.45015 3.54713 3.71923 3.89273 3.91387 3.99760 4.09154 4.14204 4.21938 4.32198 4.33011 4.42713 4.44852 4.67050 4.68513 4.73606 4.79992 4.81603 4.94502 5.06341 5.08440 5.23234 5.29147 5.35676 5.43015 5.52549 5.65073 5.86250 6.05353 6.16537 6.68938 6.70044 6.76599 7.47609 8.41935 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.010308 B = 0.003174 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.641934 B = 8819.597853 C =11225.209699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.381 5.381 3 C 0.065 3.935 4 C -0.226 4.226 5 C -0.034 4.034 6 H 0.110 0.890 7 C -0.109 4.109 8 C -0.169 4.169 9 H 0.151 0.849 10 C 0.483 3.517 11 O -0.525 6.525 12 O -0.292 6.292 13 C 0.112 3.888 14 C -0.187 4.187 15 C -0.046 4.046 16 C -0.194 4.194 17 C 0.128 3.872 18 O -0.241 6.241 19 C -0.491 4.491 20 H 0.079 0.921 21 C -0.037 4.037 22 N -0.910 5.910 23 Si 1.146 2.854 24 H -0.268 1.268 25 H -0.262 1.262 26 H -0.264 1.264 27 C -0.246 4.246 28 C 0.057 3.943 29 N -0.331 5.331 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.194 0.806 34 H 0.108 0.892 35 H 0.147 0.853 36 H 0.161 0.839 37 H 0.180 0.820 38 H 0.134 0.866 39 H 0.264 0.736 40 H 0.106 0.894 41 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.936 -20.642 -14.539 25.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.163 5.163 3 C -0.083 4.083 4 C -0.237 4.237 5 C -0.053 4.053 6 H 0.128 0.872 7 C -0.146 4.146 8 C -0.188 4.188 9 H 0.169 0.831 10 C 0.329 3.671 11 O -0.412 6.412 12 O -0.207 6.207 13 C 0.071 3.929 14 C -0.205 4.205 15 C -0.064 4.064 16 C -0.213 4.213 17 C 0.078 3.922 18 O -0.148 6.148 19 C -0.566 4.566 20 H 0.097 0.903 21 C -0.235 4.235 22 N -0.544 5.544 23 Si 0.962 3.038 24 H -0.193 1.193 25 H -0.187 1.187 26 H -0.189 1.189 27 C -0.266 4.266 28 C -0.129 4.129 29 N -0.153 5.153 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.127 0.873 33 H 0.211 0.789 34 H 0.126 0.874 35 H 0.164 0.836 36 H 0.179 0.821 37 H 0.197 0.803 38 H 0.151 0.849 39 H 0.072 0.928 40 H 0.124 0.876 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -7.193 -20.437 -13.763 25.667 hybrid contribution 1.695 0.696 -0.450 1.887 sum -5.499 -19.740 -14.213 24.938 Atomic orbital electron populations 1.22190 0.72060 1.05827 1.04699 1.48794 1.07981 1.03334 1.56142 1.22752 0.90917 0.94505 1.00088 1.19238 0.92860 0.93347 1.18253 1.20240 0.88401 0.99569 0.97107 0.87152 1.23355 0.96621 1.03471 0.91162 1.21985 1.05834 0.95188 0.95790 0.83121 1.23918 0.76083 0.91187 0.75960 1.90700 1.61626 1.32932 1.55922 1.84526 1.52293 1.35215 1.48695 1.18460 0.91951 0.84960 0.97486 1.21158 0.92473 1.00630 1.06276 1.21119 1.00925 0.90281 0.94080 1.20737 0.91084 1.02732 1.06742 1.19602 0.93012 0.87220 0.92368 1.83655 1.28828 1.36297 1.66034 1.22539 0.88395 1.08422 1.37292 0.90313 1.28346 1.10064 0.91501 0.93548 1.70647 1.15119 1.24566 1.44054 0.82556 0.67035 0.76758 0.77472 1.19289 1.18710 1.18902 1.21190 1.01007 0.95687 1.08740 1.24176 0.95694 0.94400 0.98611 1.77314 1.02418 1.09619 1.25921 0.89321 0.88967 0.87345 0.78878 0.87356 0.83564 0.82127 0.80287 0.84856 0.92788 0.87600 0.77452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.83 11.47 127.77 1.47 2.29 16 2 N -0.38 -6.63 4.01 -369.57 -1.48 -8.11 16 3 C 0.06 1.13 11.40 83.54 0.95 2.08 16 4 C -0.23 -4.15 5.76 -20.14 -0.12 -4.26 16 5 C -0.03 -0.65 5.76 -11.54 -0.07 -0.72 16 6 H 0.11 2.51 7.67 -2.38 -0.02 2.49 16 7 C -0.11 -1.59 9.73 30.59 0.30 -1.29 16 8 C -0.17 -3.67 6.00 -11.54 -0.07 -3.74 16 9 H 0.15 2.83 8.14 -2.39 -0.02 2.81 16 10 C 0.48 15.99 7.60 71.24 0.54 16.53 16 11 O -0.52 -21.40 15.70 21.97 0.34 -21.05 16 12 O -0.29 -10.51 10.03 4.55 0.05 -10.47 16 13 C 0.11 4.59 5.18 22.49 0.12 4.70 16 14 C -0.19 -6.19 9.98 22.40 0.22 -5.97 16 15 C -0.05 -1.48 10.03 22.24 0.22 -1.26 16 16 C -0.19 -8.06 9.99 22.41 0.22 -7.84 16 17 C 0.13 6.68 6.65 22.56 0.15 6.83 16 18 O -0.24 -14.75 9.16 -22.81 -0.21 -14.96 16 19 C -0.49 -30.14 9.49 67.92 0.64 -29.49 16 20 H 0.08 4.72 5.20 -2.91 -0.02 4.71 16 21 C -0.04 -2.21 5.49 84.83 0.47 -1.74 16 22 N -0.91 -57.45 13.70 21.61 0.30 -57.15 16 23 Si 1.15 49.98 29.92 68.60 2.05 52.04 16 24 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 25 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 26 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 27 C -0.25 -12.20 8.60 22.49 0.19 -12.01 16 28 C 0.06 0.98 11.35 85.24 0.97 1.94 16 29 N -0.33 -6.90 12.58 -57.03 -0.72 -7.61 16 30 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.11 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.19 2.49 8.06 -2.91 -0.02 2.47 16 34 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.15 1.13 6.97 -2.39 -0.02 1.11 16 36 H 0.16 3.99 8.06 -2.91 -0.02 3.96 16 37 H 0.18 3.82 8.06 -2.91 -0.02 3.79 16 38 H 0.13 5.14 8.06 -2.91 -0.02 5.12 16 39 H 0.26 17.24 7.97 -92.71 -0.74 16.50 16 40 H 0.11 5.69 5.63 -2.91 -0.02 5.67 16 41 H 0.21 2.13 7.19 -2.91 -0.02 2.11 16 Total: -1.00 -85.03 364.48 7.65 -77.38 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 1.10 Total: 23.88 kcal Atomic # 6 Polarization: -40.16 SS G_CDS: 6.21 Total: -33.95 kcal Atomic # 7 Polarization: -70.97 SS G_CDS: -1.90 Total: -72.88 kcal Atomic # 8 Polarization: -46.66 SS G_CDS: 0.18 Total: -46.48 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 2.05 Total: 52.04 kcal Total: -85.03 7.65 -77.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343505.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.084 kcal (2) G-P(sol) polarization free energy of solvation -85.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.45 seconds