Wall clock time and date at job start Tue Mar 31 2020 17:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28444 * 125.21828 * 2 1 4 4 C 1.30928 * 111.01957 * 179.73539 * 3 2 1 5 5 C 1.39513 * 107.94741 * 359.97438 * 4 3 2 6 6 C 1.36841 * 125.21760 * 179.69142 * 2 1 3 7 7 C 1.46293 * 126.93257 * 0.24930 * 6 2 1 8 8 O 1.21362 * 119.99940 * 359.97438 * 7 6 2 9 9 C 1.50698 * 120.00300 * 180.02562 * 7 6 2 10 10 O 1.45198 * 109.47445 * 179.97438 * 9 7 6 11 11 C 1.34230 * 117.00203 * 179.97438 * 10 9 7 12 12 O 1.20831 * 119.99647 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99989 * 180.02562 * 11 10 9 14 14 C 1.50703 * 109.46931 * 180.02562 * 13 11 10 15 15 C 1.37638 * 120.12858 * 265.00072 * 14 13 11 16 16 C 1.38614 * 120.25142 * 179.97438 * 15 14 13 17 17 C 1.38659 * 120.49769 * 0.02562 * 16 15 14 18 18 C 1.37598 * 120.24940 * 0.02562 * 17 16 15 19 19 C 1.40694 * 120.12884 * 84.72388 * 14 13 11 20 20 C 1.41397 * 120.24419 * 359.97438 * 19 14 13 21 21 H 1.08007 * 120.00001 * 333.89601 * 20 19 14 22 22 C 1.39949 * 120.00435 * 153.89981 * 20 19 14 23 23 N 1.30822 * 119.99410 * 343.70775 * 22 20 19 24 24 Si 1.86799 * 120.00309 * 163.70679 * 22 20 19 25 25 H 1.48502 * 109.46866 * 359.97438 * 24 22 20 26 26 H 1.48491 * 109.47172 * 119.99712 * 24 22 20 27 27 H 1.48499 * 109.47156 * 240.00134 * 24 22 20 28 28 H 1.09009 * 109.46617 * 90.02502 * 1 2 3 29 29 H 1.08993 * 109.47162 * 210.02133 * 1 2 3 30 30 H 1.08996 * 109.46946 * 330.03095 * 1 2 3 31 31 H 1.07995 * 126.02335 * 180.02562 * 4 3 2 32 32 H 1.08000 * 127.33445 * 180.02562 * 5 4 3 33 33 H 1.09006 * 109.46814 * 299.99740 * 9 7 6 34 34 H 1.08999 * 109.47283 * 59.99047 * 9 7 6 35 35 H 1.08996 * 109.47000 * 299.99705 * 13 11 10 36 36 H 1.08995 * 109.47257 * 60.00280 * 13 11 10 37 37 H 1.08007 * 119.87390 * 0.02562 * 15 14 13 38 38 H 1.07992 * 119.74887 * 179.97438 * 16 15 14 39 39 H 1.07994 * 119.87266 * 180.02562 * 17 16 15 40 40 H 1.08005 * 120.12556 * 179.97438 * 18 17 16 41 41 H 0.97000 * 119.99438 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2057 1.0493 0.0000 4 6 3.4750 0.7282 0.0056 5 6 3.5662 -0.6639 0.0103 6 6 2.2541 -1.1179 0.0060 7 6 1.8057 -2.5104 0.0084 8 8 0.6193 -2.7659 0.0054 9 6 2.8170 -3.6277 0.0158 10 8 2.1269 -4.9052 0.0175 11 6 2.8895 -6.0098 0.0234 12 8 4.0938 -5.9124 0.0275 13 6 2.2435 -7.3714 0.0250 14 6 3.3119 -8.4342 0.0325 15 6 3.7333 -8.9986 -1.1500 16 6 4.7163 -9.9759 -1.1461 17 6 5.2855 -10.3967 0.0462 18 6 4.8789 -9.8472 1.2404 19 6 3.8866 -8.8492 1.2478 20 6 3.4663 -8.2720 2.4682 21 1 3.0522 -7.2746 2.4795 22 6 3.5867 -8.9931 3.6616 23 7 3.7794 -10.2866 3.6275 24 14 3.4723 -8.1087 5.3030 25 1 3.2540 -6.6585 5.0696 26 1 2.3372 -8.6612 6.0849 27 1 4.7355 -8.3033 6.0591 28 1 -0.3633 -0.0004 -1.0278 29 1 -0.3633 -0.8897 0.5141 30 1 -0.3633 0.8902 0.5133 31 1 4.3050 1.4192 0.0073 32 1 4.4659 -1.2614 0.0158 33 1 3.4453 -3.5550 -0.8720 34 1 3.4383 -3.5495 0.9079 35 1 1.6204 -7.4769 0.9130 36 1 1.6268 -7.4820 -0.8669 37 1 3.2971 -8.6781 -2.0846 38 1 5.0405 -10.4136 -2.0786 39 1 6.0509 -11.1586 0.0375 40 1 5.3234 -10.1767 2.1680 41 1 3.8625 -10.7865 4.4546 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848738104.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:06 Heat of formation + Delta-G solvation = -20.308245 kcal Electronic energy + Delta-G solvation = -26639.474163 eV Core-core repulsion = 22679.500144 eV Total energy + Delta-G solvation = -3959.974019 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.63 seconds Orbital eigenvalues (eV) -42.81333 -40.22824 -39.07276 -37.62451 -35.84576 -33.72922 -33.68784 -32.05320 -31.74752 -29.54329 -28.93593 -27.45672 -26.86950 -25.10047 -23.46994 -21.92261 -21.08618 -20.94304 -19.91655 -19.40571 -17.71328 -17.23386 -16.88477 -16.80357 -16.37220 -16.23606 -15.50862 -15.40116 -14.79631 -14.61003 -14.51241 -13.98829 -13.76917 -13.68831 -13.62602 -13.16123 -12.77906 -12.71266 -12.60056 -12.29528 -11.84021 -11.61481 -11.27435 -11.19550 -11.14177 -11.04178 -10.76096 -10.52929 -10.43603 -10.23688 -9.83265 -9.55440 -9.55330 -9.43912 -9.36692 -9.22002 -7.40598 -7.37535 -6.79902 -4.42086 0.59884 2.00998 2.18174 2.55524 2.57410 2.80038 2.83725 3.05064 3.08655 3.10281 3.22064 3.82124 3.90010 4.19873 4.57966 4.60480 4.79059 4.81416 4.92732 5.02200 5.09333 5.16190 5.30300 5.39688 5.46975 5.71108 5.92324 5.99032 6.13810 6.22995 6.32437 6.37374 6.45375 6.65883 6.81727 7.02572 7.05499 7.22735 7.34854 7.57385 7.68706 7.84436 7.98753 8.06481 8.23790 8.33105 8.58207 8.84081 8.93476 10.14046 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013870 B = 0.002984 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.225993 B = 9382.542786 C =10478.174146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.258 5.258 3 N -0.274 5.274 4 C -0.006 4.006 5 C -0.168 4.168 6 C -0.070 4.070 7 C 0.429 3.571 8 O -0.433 6.433 9 C 0.033 3.967 10 O -0.350 6.350 11 C 0.461 3.539 12 O -0.489 6.489 13 C -0.039 4.039 14 C -0.196 4.196 15 C -0.076 4.076 16 C -0.240 4.240 17 C -0.104 4.104 18 C -0.158 4.158 19 C 0.130 3.870 20 C -0.458 4.458 21 H 0.074 0.926 22 C 0.078 3.922 23 N -0.791 5.791 24 Si 0.903 3.097 25 H -0.261 1.261 26 H -0.273 1.273 27 H -0.271 1.271 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.190 0.810 32 H 0.168 0.832 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.118 0.882 41 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.530 16.098 -4.566 17.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.047 5.047 3 N -0.108 5.108 4 C -0.181 4.181 5 C -0.196 4.196 6 C -0.196 4.196 7 C 0.303 3.697 8 O -0.305 6.305 9 C -0.043 4.043 10 O -0.268 6.268 11 C 0.303 3.697 12 O -0.374 6.374 13 C -0.077 4.077 14 C -0.198 4.198 15 C -0.094 4.094 16 C -0.259 4.259 17 C -0.122 4.122 18 C -0.177 4.177 19 C 0.128 3.872 20 C -0.487 4.487 21 H 0.092 0.908 22 C -0.140 4.140 23 N -0.416 5.416 24 Si 0.728 3.272 25 H -0.185 1.185 26 H -0.199 1.199 27 H -0.196 1.196 28 H 0.105 0.895 29 H 0.128 0.872 30 H 0.114 0.886 31 H 0.206 0.794 32 H 0.186 0.814 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.136 0.864 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.677 16.705 -4.411 17.900 hybrid contribution 0.818 -0.184 0.789 1.151 sum -3.860 16.521 -3.622 17.348 Atomic orbital electron populations 1.22409 0.72392 1.06092 1.04953 1.45830 1.07978 1.01927 1.48977 1.73219 1.04560 1.13832 1.19198 1.23627 0.93392 0.95144 1.05916 1.22523 0.95761 0.95618 1.05719 1.21900 0.92035 0.90113 1.15528 1.21221 0.89715 0.86420 0.72304 1.90580 1.18715 1.85933 1.35237 1.22863 0.94282 0.81556 1.05580 1.86625 1.41263 1.13581 1.85332 1.24687 0.86856 0.86167 0.71973 1.90653 1.15798 1.86885 1.44033 1.19998 0.98182 0.84938 1.04543 1.19040 1.03194 1.03333 0.94232 1.20332 0.96920 0.96763 0.95409 1.20322 1.04502 1.04742 0.96342 1.20710 0.99021 0.99033 0.93444 1.21312 0.99213 1.00678 0.96526 1.17354 0.88541 0.90020 0.91288 1.19527 1.36791 1.01422 0.90999 0.90758 1.25884 0.92355 0.94454 1.01317 1.69820 1.34937 1.06836 1.30018 0.86332 0.78723 0.80918 0.81251 1.18468 1.19863 1.19620 0.89472 0.87241 0.88569 0.79354 0.81416 0.87495 0.87313 0.87239 0.89132 0.89496 0.89476 0.89425 0.86389 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.66 10.83 59.85 0.65 1.30 16 2 N -0.26 -2.83 3.76 -63.98 -0.24 -3.07 16 3 N -0.27 -3.03 11.90 30.56 0.36 -2.67 16 4 C -0.01 -0.06 12.02 -17.46 -0.21 -0.27 16 5 C -0.17 -1.56 10.56 -38.88 -0.41 -1.97 16 6 C -0.07 -0.79 6.94 -82.17 -0.57 -1.36 16 7 C 0.43 5.40 7.19 -31.07 -0.22 5.17 16 8 O -0.43 -6.36 14.84 -14.17 -0.21 -6.58 16 9 C 0.03 0.43 5.44 36.00 0.20 0.63 16 10 O -0.35 -5.93 9.75 -45.90 -0.45 -6.37 16 11 C 0.46 8.96 7.57 36.01 0.27 9.23 16 12 O -0.49 -10.76 15.78 -18.75 -0.30 -11.06 16 13 C -0.04 -0.77 5.29 -29.03 -0.15 -0.92 16 14 C -0.20 -4.59 4.43 -103.91 -0.46 -5.05 16 15 C -0.08 -1.69 9.66 -39.66 -0.38 -2.08 16 16 C -0.24 -5.39 10.05 -39.29 -0.39 -5.78 16 17 C -0.10 -2.44 10.02 -39.66 -0.40 -2.84 16 18 C -0.16 -4.10 8.69 -38.87 -0.34 -4.44 16 19 C 0.13 3.39 5.56 -106.83 -0.59 2.79 16 20 C -0.46 -11.76 8.14 -37.74 -0.31 -12.07 16 21 H 0.07 1.86 6.67 -52.48 -0.35 1.51 16 22 C 0.08 1.92 5.16 -17.34 -0.09 1.83 16 23 N -0.79 -19.95 10.96 55.55 0.61 -19.34 16 24 Si 0.90 18.51 29.59 -169.99 -5.03 13.48 16 25 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 26 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 27 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 28 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 29 H 0.11 0.95 6.31 -51.93 -0.33 0.62 16 30 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.19 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.11 1.22 8.13 -51.93 -0.42 0.80 16 34 H 0.11 1.34 8.13 -51.93 -0.42 0.92 16 35 H 0.11 2.14 7.08 -51.93 -0.37 1.78 16 36 H 0.09 1.50 8.05 -51.93 -0.42 1.08 16 37 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 38 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 39 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 40 H 0.12 3.14 6.21 -52.48 -0.33 2.82 16 41 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 LS Contribution 360.91 15.07 5.44 5.44 Total: -1.00 -31.82 360.91 -7.96 -39.78 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -4.73 Total: 6.22 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -3.42 Total: -15.83 kcal Atomic # 7 Polarization: -25.82 SS G_CDS: 0.73 Total: -25.09 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.95 Total: -24.01 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.82 -7.96 -39.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848738104.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.473 kcal (2) G-P(sol) polarization free energy of solvation -31.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.63 seconds