Wall clock time and date at job start Tue Mar 31 2020 17:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28444 * 125.21828 * 2 1 4 4 C 1.30928 * 111.01957 * 179.73539 * 3 2 1 5 5 C 1.39513 * 107.94741 * 359.97438 * 4 3 2 6 6 C 1.36841 * 125.21760 * 179.69142 * 2 1 3 7 7 C 1.46293 * 126.93257 * 0.24930 * 6 2 1 8 8 O 1.21362 * 119.99940 * 359.97438 * 7 6 2 9 9 C 1.50698 * 120.00300 * 180.02562 * 7 6 2 10 10 O 1.45198 * 109.47445 * 179.97438 * 9 7 6 11 11 C 1.34230 * 117.00203 * 179.97438 * 10 9 7 12 12 O 1.20831 * 119.99647 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99989 * 180.02562 * 11 10 9 14 14 C 1.50703 * 109.46931 * 180.02562 * 13 11 10 15 15 C 1.37638 * 120.12858 * 265.00072 * 14 13 11 16 16 C 1.38614 * 120.25142 * 179.97438 * 15 14 13 17 17 C 1.38659 * 120.49769 * 0.02562 * 16 15 14 18 18 C 1.37598 * 120.24940 * 0.02562 * 17 16 15 19 19 C 1.40694 * 120.12884 * 84.72388 * 14 13 11 20 20 C 1.41397 * 120.24419 * 359.97438 * 19 14 13 21 21 H 1.08007 * 120.00001 * 333.89601 * 20 19 14 22 22 C 1.39949 * 120.00435 * 153.89981 * 20 19 14 23 23 N 1.30822 * 119.99410 * 343.70775 * 22 20 19 24 24 Si 1.86799 * 120.00309 * 163.70679 * 22 20 19 25 25 H 1.48502 * 109.46866 * 359.97438 * 24 22 20 26 26 H 1.48491 * 109.47172 * 119.99712 * 24 22 20 27 27 H 1.48499 * 109.47156 * 240.00134 * 24 22 20 28 28 H 1.09009 * 109.46617 * 90.02502 * 1 2 3 29 29 H 1.08993 * 109.47162 * 210.02133 * 1 2 3 30 30 H 1.08996 * 109.46946 * 330.03095 * 1 2 3 31 31 H 1.07995 * 126.02335 * 180.02562 * 4 3 2 32 32 H 1.08000 * 127.33445 * 180.02562 * 5 4 3 33 33 H 1.09006 * 109.46814 * 299.99740 * 9 7 6 34 34 H 1.08999 * 109.47283 * 59.99047 * 9 7 6 35 35 H 1.08996 * 109.47000 * 299.99705 * 13 11 10 36 36 H 1.08995 * 109.47257 * 60.00280 * 13 11 10 37 37 H 1.08007 * 119.87390 * 0.02562 * 15 14 13 38 38 H 1.07992 * 119.74887 * 179.97438 * 16 15 14 39 39 H 1.07994 * 119.87266 * 180.02562 * 17 16 15 40 40 H 1.08005 * 120.12556 * 179.97438 * 18 17 16 41 41 H 0.97000 * 119.99438 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2057 1.0493 0.0000 4 6 3.4750 0.7282 0.0056 5 6 3.5662 -0.6639 0.0103 6 6 2.2541 -1.1179 0.0060 7 6 1.8057 -2.5104 0.0084 8 8 0.6193 -2.7659 0.0054 9 6 2.8170 -3.6277 0.0158 10 8 2.1269 -4.9052 0.0175 11 6 2.8895 -6.0098 0.0234 12 8 4.0938 -5.9124 0.0275 13 6 2.2435 -7.3714 0.0250 14 6 3.3119 -8.4342 0.0325 15 6 3.7333 -8.9986 -1.1500 16 6 4.7163 -9.9759 -1.1461 17 6 5.2855 -10.3967 0.0462 18 6 4.8789 -9.8472 1.2404 19 6 3.8866 -8.8492 1.2478 20 6 3.4663 -8.2720 2.4682 21 1 3.0522 -7.2746 2.4795 22 6 3.5867 -8.9931 3.6616 23 7 3.7794 -10.2866 3.6275 24 14 3.4723 -8.1087 5.3030 25 1 3.2540 -6.6585 5.0696 26 1 2.3372 -8.6612 6.0849 27 1 4.7355 -8.3033 6.0591 28 1 -0.3633 -0.0004 -1.0278 29 1 -0.3633 -0.8897 0.5141 30 1 -0.3633 0.8902 0.5133 31 1 4.3050 1.4192 0.0073 32 1 4.4659 -1.2614 0.0158 33 1 3.4453 -3.5550 -0.8720 34 1 3.4383 -3.5495 0.9079 35 1 1.6204 -7.4769 0.9130 36 1 1.6268 -7.4820 -0.8669 37 1 3.2971 -8.6781 -2.0846 38 1 5.0405 -10.4136 -2.0786 39 1 6.0509 -11.1586 0.0375 40 1 5.3234 -10.1767 2.1680 41 1 3.8625 -10.7865 4.4546 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848738104.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:05 Heat of formation + Delta-G solvation = -36.453937 kcal Electronic energy + Delta-G solvation = -26640.174293 eV Core-core repulsion = 22679.500144 eV Total energy + Delta-G solvation = -3960.674149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.57665 -41.62514 -40.22977 -39.33787 -37.30909 -35.51967 -34.43689 -33.62212 -32.75789 -31.37430 -30.08288 -28.53626 -28.05215 -26.91369 -24.42965 -23.01687 -22.81053 -22.22917 -21.12621 -20.70371 -19.10055 -18.84955 -18.07385 -17.90622 -17.62172 -17.28464 -17.08863 -16.37766 -16.25822 -15.91612 -15.81676 -15.41180 -15.25972 -14.71348 -14.60528 -14.39399 -14.01362 -13.79386 -13.71710 -13.56566 -13.39090 -13.32392 -12.93022 -12.79575 -12.74189 -12.52360 -12.11769 -11.96972 -11.84663 -11.52785 -11.34447 -11.25764 -11.08988 -11.04099 -10.35707 -10.09325 -9.24048 -9.21980 -8.61733 -6.32598 -0.27982 0.86704 1.07337 1.27220 1.31436 1.36935 1.38177 1.49343 1.52317 1.77260 1.77481 2.19462 2.73139 2.80011 3.52864 3.67634 3.74108 4.00013 4.02049 4.06697 4.13881 4.23269 4.31845 4.36400 4.38055 4.54732 4.58251 4.61148 4.71062 4.79006 4.81582 5.00286 5.18267 5.30970 5.36912 5.45571 5.52605 5.60993 5.75479 6.02146 6.09896 6.14039 6.21435 6.39592 6.71142 6.85964 6.93758 6.96504 7.08196 8.34716 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013870 B = 0.002984 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.225993 B = 9382.542786 C =10478.174146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.268 5.268 3 N -0.291 5.291 4 C -0.008 4.008 5 C -0.158 4.158 6 C -0.093 4.093 7 C 0.439 3.561 8 O -0.461 6.461 9 C 0.026 3.974 10 O -0.353 6.353 11 C 0.471 3.529 12 O -0.520 6.520 13 C -0.042 4.042 14 C -0.201 4.201 15 C -0.084 4.084 16 C -0.241 4.241 17 C -0.112 4.112 18 C -0.191 4.191 19 C 0.099 3.901 20 C -0.485 4.485 21 H 0.071 0.929 22 C 0.039 3.961 23 N -0.822 5.822 24 Si 0.969 3.031 25 H -0.262 1.262 26 H -0.263 1.263 27 H -0.266 1.266 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.113 0.887 31 H 0.221 0.779 32 H 0.192 0.808 33 H 0.129 0.871 34 H 0.119 0.881 35 H 0.106 0.894 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.411 17.621 -5.368 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.057 5.057 3 N -0.126 5.126 4 C -0.182 4.182 5 C -0.186 4.186 6 C -0.217 4.217 7 C 0.315 3.685 8 O -0.335 6.335 9 C -0.049 4.049 10 O -0.270 6.270 11 C 0.315 3.685 12 O -0.407 6.407 13 C -0.079 4.079 14 C -0.202 4.202 15 C -0.102 4.102 16 C -0.260 4.260 17 C -0.130 4.130 18 C -0.211 4.211 19 C 0.097 3.903 20 C -0.515 4.515 21 H 0.089 0.911 22 C -0.176 4.176 23 N -0.448 5.448 24 Si 0.791 3.209 25 H -0.186 1.186 26 H -0.188 1.188 27 H -0.191 1.191 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.132 0.868 31 H 0.237 0.763 32 H 0.209 0.791 33 H 0.146 0.854 34 H 0.136 0.864 35 H 0.124 0.876 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.125 0.875 40 H 0.117 0.883 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.575 18.234 -5.225 19.512 hybrid contribution 0.802 -0.595 0.909 1.350 sum -3.773 17.639 -4.316 18.547 Atomic orbital electron populations 1.22545 0.71465 1.06482 1.05756 1.46082 1.08761 1.01751 1.49120 1.73219 1.05536 1.14138 1.19695 1.24238 0.93568 0.95704 1.04641 1.22912 0.95766 0.96035 1.03930 1.21822 0.93042 0.89496 1.17389 1.21192 0.89045 0.86923 0.71300 1.90576 1.19637 1.86325 1.36981 1.23205 0.94684 0.79845 1.07140 1.86566 1.41266 1.14450 1.84741 1.24395 0.86252 0.86700 0.71199 1.90639 1.16961 1.87432 1.45678 1.20005 0.97415 0.84476 1.06015 1.19427 1.03262 1.03726 0.93816 1.20769 0.96704 0.96289 0.96428 1.20742 1.03920 1.04308 0.97025 1.20990 0.99474 0.99298 0.93278 1.21316 1.00566 1.02396 0.96774 1.17719 0.89210 0.90735 0.92660 1.19671 1.38263 1.01540 0.91985 0.91124 1.26631 0.91717 0.94967 1.04309 1.69873 1.35774 1.08014 1.31182 0.85349 0.79042 0.79458 0.77098 1.18620 1.18765 1.19087 0.88479 0.88193 0.86818 0.76252 0.79094 0.85384 0.86353 0.87644 0.85743 0.86123 0.86419 0.87482 0.88344 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.18 10.83 127.77 1.38 2.57 16 2 N -0.27 -5.55 3.76 -356.35 -1.34 -6.89 16 3 N -0.29 -5.95 11.90 -57.21 -0.68 -6.63 16 4 C -0.01 -0.12 12.02 85.14 1.02 0.90 16 5 C -0.16 -2.57 10.56 22.72 0.24 -2.33 16 6 C -0.09 -1.95 6.94 40.60 0.28 -1.67 16 7 C 0.44 10.63 7.19 27.78 0.20 10.83 16 8 O -0.46 -13.43 14.84 15.51 0.23 -13.20 16 9 C 0.03 0.65 5.44 71.24 0.39 1.04 16 10 O -0.35 -11.57 9.75 -45.07 -0.44 -12.01 16 11 C 0.47 17.88 7.57 71.24 0.54 18.42 16 12 O -0.52 -22.56 15.78 21.95 0.35 -22.21 16 13 C -0.04 -1.61 5.29 29.10 0.15 -1.46 16 14 C -0.20 -9.29 4.43 -19.41 -0.09 -9.37 16 15 C -0.08 -3.58 9.66 22.22 0.21 -3.36 16 16 C -0.24 -10.39 10.05 22.46 0.23 -10.16 16 17 C -0.11 -5.27 10.02 22.22 0.22 -5.05 16 18 C -0.19 -10.18 8.69 22.73 0.20 -9.98 16 19 C 0.10 5.25 5.56 -21.29 -0.12 5.13 16 20 C -0.49 -25.55 8.14 23.46 0.19 -25.36 16 21 H 0.07 3.63 6.67 -2.91 -0.02 3.61 16 22 C 0.04 1.95 5.16 85.26 0.44 2.39 16 23 N -0.82 -42.67 10.96 21.83 0.24 -42.43 16 24 Si 0.97 38.42 29.59 68.60 2.03 40.45 16 25 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 26 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 27 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 28 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.10 1.74 6.31 -2.39 -0.02 1.72 16 30 H 0.11 1.27 8.14 -2.39 -0.02 1.26 16 31 H 0.22 1.80 8.06 -2.91 -0.02 1.77 16 32 H 0.19 2.05 8.06 -2.91 -0.02 2.02 16 33 H 0.13 2.66 8.13 -2.38 -0.02 2.64 16 34 H 0.12 2.75 8.13 -2.39 -0.02 2.73 16 35 H 0.11 4.13 7.08 -2.39 -0.02 4.11 16 36 H 0.12 3.83 8.05 -2.39 -0.02 3.81 16 37 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 38 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 39 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 40 H 0.10 5.50 6.21 -2.91 -0.02 5.48 16 41 H 0.29 13.48 8.30 -92.71 -0.77 12.71 16 Total: -1.00 -69.65 360.91 6.95 -62.69 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 1.07 Total: 27.70 kcal Atomic # 6 Polarization: -32.96 SS G_CDS: 5.50 Total: -27.47 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -1.78 Total: -55.95 kcal Atomic # 8 Polarization: -47.56 SS G_CDS: 0.14 Total: -47.42 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Total: -69.65 6.95 -62.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848738104.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.241 kcal (2) G-P(sol) polarization free energy of solvation -69.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds