Wall clock time and date at job start Tue Mar 31 2020 16:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28441 * 125.19194 * 2 1 4 4 C 1.30879 * 110.94144 * 180.02562 * 3 2 1 5 5 C 1.39636 * 107.88252 * 359.75170 * 4 3 2 6 6 C 1.50706 * 127.32693 * 180.27224 * 5 4 3 7 7 C 1.53000 * 117.49545 * 8.75247 * 6 5 4 8 8 C 1.52991 * 60.00206 * 252.51310 * 7 6 5 9 9 C 1.36645 * 125.19484 * 179.97438 * 2 1 3 10 10 C 1.46996 * 126.89906 * 359.97438 * 9 2 1 11 11 O 1.21556 * 120.00023 * 180.02562 * 10 9 2 12 12 O 1.34825 * 119.99413 * 0.02650 * 10 9 2 13 13 C 1.35907 * 116.99605 * 175.00978 * 12 10 9 14 14 C 1.38833 * 120.02618 * 255.26324 * 13 12 10 15 15 C 1.38183 * 120.08097 * 180.02562 * 14 13 12 16 16 C 1.38162 * 120.12768 * 359.79285 * 15 14 13 17 17 C 1.38891 * 120.03683 * 0.46399 * 16 15 14 18 18 O 1.35749 * 120.03796 * 179.78645 * 17 16 15 19 19 C 1.34836 * 117.00512 * 174.12721 * 18 17 16 20 20 H 1.08004 * 119.99276 * 5.06917 * 19 18 17 21 21 C 1.38652 * 120.00472 * 185.06439 * 19 18 17 22 22 N 1.31555 * 119.99658 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99883 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47136 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47383 * 120.00208 * 23 21 19 26 26 H 1.48503 * 109.46871 * 239.99856 * 23 21 19 27 27 C 1.38584 * 120.01924 * 75.29339 * 13 12 10 28 28 H 1.09005 * 109.47229 * 270.00347 * 1 2 3 29 29 H 1.08998 * 109.47195 * 30.00371 * 1 2 3 30 30 H 1.08998 * 109.46868 * 150.00374 * 1 2 3 31 31 H 1.07998 * 126.05901 * 179.97438 * 4 3 2 32 32 H 1.08990 * 115.55103 * 154.46227 * 6 5 4 33 33 H 1.09006 * 117.50142 * 0.02562 * 7 6 5 34 34 H 1.08999 * 117.49880 * 145.02276 * 7 6 5 35 35 H 1.09003 * 117.50122 * 252.51128 * 8 7 6 36 36 H 1.09005 * 117.50148 * 107.48761 * 8 7 6 37 37 H 1.07995 * 119.96040 * 0.03186 * 14 13 12 38 38 H 1.08011 * 119.93803 * 180.02562 * 15 14 13 39 39 H 1.07999 * 119.97695 * 180.25084 * 16 15 14 40 40 H 0.97000 * 119.99504 * 179.97438 * 22 21 19 41 41 H 1.07997 * 120.06591 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2053 1.0497 0.0000 4 6 3.4738 0.7275 -0.0005 5 6 3.5622 -0.6661 0.0048 6 6 4.8161 -1.5021 0.0120 7 6 6.1473 -0.7772 0.2203 8 6 5.7857 -1.3313 -1.1591 9 6 2.2526 -1.1167 0.0005 10 6 1.8006 -2.5154 0.0017 11 8 2.6155 -3.4174 0.0025 12 8 0.4823 -2.7978 0.0018 13 6 0.1317 -4.1067 -0.1025 14 6 -0.3640 -4.5997 -1.3019 15 6 -0.7213 -5.9302 -1.4090 16 6 -0.5825 -6.7750 -0.3246 17 6 -0.0922 -6.2860 0.8794 18 8 0.0400 -7.1150 1.9461 19 6 0.6341 -6.6083 3.0454 20 1 0.9058 -5.5635 3.0792 21 6 0.8962 -7.4283 4.1322 22 7 0.5648 -8.7008 4.0912 23 14 1.7186 -6.7260 5.6553 24 1 1.9874 -5.2799 5.4504 25 1 0.8237 -6.9025 6.8271 26 1 2.9992 -7.4374 5.8989 27 6 0.2682 -4.9500 0.9887 28 1 -0.3634 0.0001 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 4.3048 1.4172 -0.0011 32 1 4.7136 -2.4995 0.4392 33 1 6.1161 0.3044 0.3526 34 1 6.9209 -1.2977 0.7848 35 1 6.3214 -2.2165 -1.5022 36 1 5.5166 -0.6144 -1.9349 37 1 -0.4703 -3.9426 -2.1523 38 1 -1.1063 -6.3115 -2.3434 39 1 -0.8588 -7.8154 -0.4122 40 1 0.7484 -9.2745 4.8514 41 1 0.6535 -4.5684 1.9227 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851088171.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:11 Heat of formation + Delta-G solvation = 37.223132 kcal Electronic energy + Delta-G solvation = -27304.187725 eV Core-core repulsion = 23346.708453 eV Total energy + Delta-G solvation = -3957.479271 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -42.81139 -40.80000 -38.82214 -37.51970 -36.95296 -35.80750 -33.35355 -32.35847 -31.26236 -29.73058 -28.98486 -27.33940 -25.58141 -24.85058 -23.29925 -22.49946 -22.02449 -21.58107 -20.44860 -19.94515 -18.48184 -18.20581 -17.56689 -16.64314 -16.17328 -15.71854 -15.64067 -15.62295 -15.19048 -14.57174 -14.35002 -14.22223 -14.18384 -13.68738 -13.48532 -13.12535 -13.09776 -12.87424 -12.71152 -12.21549 -11.96293 -11.64554 -11.62299 -11.39583 -11.17567 -11.12618 -10.95981 -10.87453 -10.62950 -10.51665 -10.41707 -10.32345 -9.58752 -9.43500 -8.92750 -8.76193 -8.27087 -7.43167 -6.53121 -4.12517 0.89291 1.62579 2.12855 2.23816 2.31980 2.78775 2.91975 3.09070 3.11566 3.16613 3.86154 3.91026 4.15869 4.35212 4.49031 4.72792 4.80347 4.94042 4.98118 4.98544 5.01340 5.10868 5.16271 5.22576 5.36239 5.51049 5.52611 5.64815 5.69459 5.79088 5.91830 6.00593 6.04252 6.10479 6.20215 6.29325 6.45815 6.49304 6.75951 6.89514 7.01087 7.05267 7.26737 7.48292 7.76003 7.90141 7.99305 8.92164 9.57025 10.64226 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.010724 B = 0.003841 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.443014 B = 7287.314385 C = 8469.449149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.264 5.264 3 N -0.264 5.264 4 C -0.005 4.005 5 C -0.082 4.082 6 C -0.089 4.089 7 C -0.171 4.171 8 C -0.166 4.166 9 C -0.020 4.020 10 C 0.530 3.470 11 O -0.459 6.459 12 O -0.297 6.297 13 C 0.118 3.882 14 C -0.210 4.210 15 C -0.065 4.065 16 C -0.183 4.183 17 C 0.163 3.837 18 O -0.169 6.169 19 C -0.393 4.393 20 H 0.092 0.908 21 C 0.043 3.957 22 N -0.858 5.858 23 Si 0.940 3.060 24 H -0.266 1.266 25 H -0.274 1.274 26 H -0.274 1.274 27 C -0.227 4.227 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.188 0.812 32 H 0.128 0.872 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.271 0.729 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.751 16.948 -9.171 19.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.054 5.054 3 N -0.098 5.098 4 C -0.180 4.180 5 C -0.092 4.092 6 C -0.108 4.108 7 C -0.208 4.208 8 C -0.203 4.203 9 C -0.145 4.145 10 C 0.373 3.627 11 O -0.340 6.340 12 O -0.212 6.212 13 C 0.077 3.923 14 C -0.229 4.229 15 C -0.083 4.083 16 C -0.203 4.203 17 C 0.109 3.891 18 O -0.072 6.072 19 C -0.469 4.469 20 H 0.109 0.891 21 C -0.162 4.162 22 N -0.492 5.492 23 Si 0.765 3.235 24 H -0.191 1.191 25 H -0.200 1.200 26 H -0.199 1.199 27 C -0.247 4.247 28 H 0.108 0.892 29 H 0.116 0.884 30 H 0.128 0.872 31 H 0.205 0.795 32 H 0.146 0.854 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.132 0.868 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.081 0.919 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.044 17.061 -8.939 19.500 hybrid contribution 0.827 -0.285 0.879 1.240 sum 3.871 16.776 -8.061 19.010 Atomic orbital electron populations 1.22431 0.72058 1.06021 1.05286 1.45715 1.08011 1.01880 1.49753 1.73170 1.04041 1.13744 1.18825 1.23378 0.93505 0.93875 1.07245 1.19904 0.91492 0.93545 1.04299 1.20446 0.86136 0.99854 1.04332 1.22999 0.97645 1.00349 0.99838 1.22989 1.02324 1.03384 0.91585 1.20312 0.91201 0.85842 1.17098 1.19888 0.81318 0.87222 0.74309 1.90941 1.53799 1.46089 1.43209 1.84559 1.25335 1.27744 1.83590 1.18170 0.99826 0.80158 0.94132 1.20487 1.10526 0.96159 0.95722 1.20490 0.98141 0.92132 0.97545 1.20358 1.08017 1.00517 0.91358 1.19105 0.92721 0.88751 0.88540 1.83999 1.67425 1.36592 1.19163 1.21372 1.38712 0.96002 0.90817 0.89099 1.25286 0.96966 0.95159 0.98818 1.70041 1.43509 1.04356 1.31308 0.85655 0.78871 0.79100 0.79921 1.19066 1.19959 1.19895 1.21209 1.09928 0.93964 0.99566 0.89187 0.88366 0.87235 0.79486 0.85431 0.88583 0.88247 0.88268 0.88732 0.86772 0.85893 0.85780 0.91888 0.85006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.81 59.85 0.65 1.41 16 2 N -0.26 -3.38 3.75 -63.90 -0.24 -3.62 16 3 N -0.26 -3.34 11.90 30.58 0.36 -2.98 16 4 C 0.00 -0.05 11.41 -17.44 -0.20 -0.25 16 5 C -0.08 -1.10 5.94 -104.00 -0.62 -1.72 16 6 C -0.09 -1.11 5.68 -91.77 -0.52 -1.64 16 7 C -0.17 -1.59 10.05 -26.74 -0.27 -1.86 16 8 C -0.17 -1.67 10.23 -26.74 -0.27 -1.94 16 9 C -0.02 -0.30 6.96 -82.08 -0.57 -0.87 16 10 C 0.53 9.27 7.79 34.28 0.27 9.53 16 11 O -0.46 -9.31 14.62 -19.31 -0.28 -9.59 16 12 O -0.30 -5.08 7.49 -25.05 -0.19 -5.26 16 13 C 0.12 2.29 5.19 -39.23 -0.20 2.09 16 14 C -0.21 -3.66 9.99 -39.38 -0.39 -4.05 16 15 C -0.06 -1.11 10.03 -39.63 -0.40 -1.51 16 16 C -0.18 -3.75 9.99 -39.37 -0.39 -4.15 16 17 C 0.16 3.94 6.65 -39.13 -0.26 3.68 16 18 O -0.17 -4.79 9.76 0.04 0.00 -4.79 16 19 C -0.39 -11.06 9.49 30.89 0.29 -10.77 16 20 H 0.09 2.43 5.20 -52.48 -0.27 2.16 16 21 C 0.04 1.18 5.49 -17.52 -0.10 1.08 16 22 N -0.86 -24.94 13.67 55.48 0.76 -24.18 16 23 Si 0.94 20.75 29.55 -169.99 -5.02 15.72 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 26 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 27 C -0.23 -5.13 8.59 -39.24 -0.34 -5.47 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.11 1.05 6.15 -51.93 -0.32 0.73 16 31 H 0.19 1.51 7.34 -52.49 -0.39 1.13 16 32 H 0.13 1.91 6.86 -51.93 -0.36 1.55 16 33 H 0.10 0.73 7.12 -51.93 -0.37 0.36 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 39 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 40 H 0.27 7.19 8.31 -40.82 -0.34 6.86 16 41 H 0.13 3.11 5.64 -52.49 -0.30 2.81 16 LS Contribution 357.87 15.07 5.39 5.39 Total: -1.00 -32.90 357.87 -7.06 -39.96 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -4.52 Total: 5.76 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -3.33 Total: -16.42 kcal Atomic # 7 Polarization: -31.66 SS G_CDS: 0.88 Total: -30.78 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.47 Total: -19.64 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.90 -7.06 -39.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851088171.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.181 kcal (2) G-P(sol) polarization free energy of solvation -32.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds