Wall clock time and date at job start Tue Mar 31 2020 16:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.47054 * 2 1 4 4 C 1.52996 * 109.46925 * 119.99584 * 2 1 3 5 5 C 1.50703 * 109.47535 * 294.99977 * 4 2 1 6 6 H 1.07998 * 119.99270 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00259 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99878 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99906 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47290 * 60.00101 * 9 7 5 11 11 H 1.48502 * 109.46997 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47248 * 299.99665 * 9 7 5 13 13 C 1.53001 * 109.46884 * 239.99271 * 2 1 3 14 14 N 1.46505 * 109.46901 * 65.00351 * 13 2 1 15 15 C 1.39957 * 120.00281 * 179.97438 * 14 13 2 16 16 C 1.39098 * 119.92320 * 359.97438 * 15 14 13 17 17 C 1.38063 * 120.31740 * 179.74211 * 16 15 14 18 18 C 1.38616 * 120.17474 * 0.27789 * 17 16 15 19 19 O 1.35800 * 120.07822 * 179.97438 * 18 17 16 20 20 C 1.42902 * 116.99593 * 0.02562 * 19 18 17 21 21 F 1.39900 * 109.47237 * 59.99840 * 20 19 18 22 22 F 1.39898 * 109.47177 * 179.97438 * 20 19 18 23 23 F 1.39898 * 109.47165 * 299.99870 * 20 19 18 24 24 C 1.40122 * 119.85184 * 359.97438 * 18 17 16 25 25 C 1.43195 * 120.15804 * 179.97438 * 24 18 17 26 26 N 8.28572 * 88.59769 * 277.89159 * 2 1 3 27 27 C 1.38430 * 119.93434 * 180.25367 * 15 14 13 28 28 H 1.09000 * 109.46837 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46952 * 300.00429 * 1 2 3 30 30 H 1.08999 * 109.46968 * 60.00048 * 1 2 3 31 31 H 1.09008 * 109.46923 * 55.00159 * 4 2 1 32 32 H 1.09004 * 109.47226 * 174.99385 * 4 2 1 33 33 H 0.97008 * 119.99990 * 180.02562 * 8 7 5 34 34 H 1.08993 * 109.47424 * 305.00620 * 13 2 1 35 35 H 1.08998 * 109.46999 * 184.99839 * 13 2 1 36 36 H 0.97005 * 119.99824 * 359.97438 * 14 13 2 37 37 H 1.08002 * 119.84491 * 0.02588 * 16 15 14 38 38 H 1.07999 * 119.91105 * 180.25831 * 17 16 15 39 39 H 1.08003 * 120.08657 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6414 0.0572 2.4766 6 1 1.0807 0.9747 2.3756 7 6 1.9932 -0.4015 3.7283 8 7 2.6764 -1.5185 3.8512 9 14 1.4985 0.5630 5.2496 10 1 0.0184 0.6684 5.3092 11 1 1.9946 -0.1363 6.4621 12 1 2.0896 1.9238 5.1870 13 6 2.0400 -0.7214 -1.2492 14 7 1.6525 0.0351 -2.4424 15 6 2.0096 -0.4306 -3.7130 16 6 2.7330 -1.6117 -3.8410 17 6 3.0850 -2.0814 -5.0906 18 6 2.7244 -1.3750 -6.2275 19 8 3.0721 -1.8385 -7.4557 20 6 3.8094 -3.0618 -7.5025 21 9 3.0557 -4.0834 -6.9146 22 9 4.0818 -3.3913 -8.8346 23 9 5.0119 -2.9085 -6.8043 24 6 2.0001 -0.1816 -6.1066 25 6 1.6246 0.5537 -7.2766 26 7 1.3273 1.1373 -8.2048 27 6 1.6472 0.2882 -4.8392 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6053 -1.7198 1.2952 32 1 3.1264 -0.7995 1.2056 33 1 2.9237 -1.8414 4.7319 34 1 1.6054 -1.7199 -1.2950 35 1 3.1263 -0.7996 -1.2055 36 1 1.1483 0.8589 -2.3518 37 1 3.0168 -2.1665 -2.9589 38 1 3.6431 -3.0014 -5.1826 39 1 1.0898 1.2077 -4.7385 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877499083.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:21 Heat of formation + Delta-G solvation = -151.513617 kcal Electronic energy + Delta-G solvation = -26765.721519 eV Core-core repulsion = 22258.201267 eV Total energy + Delta-G solvation = -4507.520251 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -50.73809 -48.46373 -48.32314 -40.71989 -38.70715 -37.05283 -36.25876 -33.94651 -32.15175 -31.75650 -29.24471 -27.03043 -26.39382 -25.76368 -24.29229 -22.97891 -22.40553 -20.24290 -19.87637 -19.44816 -19.30506 -18.43712 -16.90914 -16.61889 -16.25434 -16.04385 -15.63565 -15.17367 -14.95461 -14.92162 -14.75712 -14.71266 -14.55649 -14.45940 -14.39773 -14.09397 -13.72642 -13.58804 -13.38422 -13.20392 -13.04763 -12.76799 -12.58425 -12.30702 -11.95751 -11.62979 -11.51991 -11.01434 -10.95424 -10.51781 -10.48059 -10.13214 -9.82255 -9.42513 -9.39898 -9.16442 -8.44810 -7.48574 -6.09628 -4.11926 0.43793 1.02371 1.17080 2.42482 2.52502 2.74828 3.26628 3.27821 3.32191 3.34231 3.46474 3.48290 3.67390 3.72897 4.36808 4.38465 4.46901 4.83548 4.95994 5.23172 5.26369 5.29872 5.46201 5.52026 5.75249 5.78827 5.89922 5.96722 6.03817 6.19634 6.27418 6.36840 6.69839 6.87462 6.92364 7.18392 7.25225 7.51435 7.64107 7.64583 7.88138 8.29934 8.93417 9.52469 11.01623 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.020397 B = 0.002251 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.395644 B =12433.597908 C =13500.747656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.096 4.096 3 H 0.064 0.936 4 C 0.030 3.970 5 C -0.519 4.519 6 H 0.056 0.944 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.121 3.879 14 N -0.732 5.732 15 C 0.216 3.784 16 C -0.128 4.128 17 C -0.135 4.135 18 C 0.075 3.925 19 O -0.310 6.310 20 C 0.605 3.395 21 F -0.164 7.164 22 F -0.133 7.133 23 F -0.163 7.163 24 C 0.019 3.981 25 C 0.262 3.738 26 N -0.412 5.412 27 C -0.127 4.127 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.031 0.969 31 H 0.019 0.981 32 H 0.018 0.982 33 H 0.262 0.738 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.403 0.597 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.252 -2.724 -20.271 20.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.115 4.115 3 H 0.082 0.918 4 C -0.007 4.007 5 C -0.557 4.557 6 H 0.074 0.926 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.003 4.003 14 N -0.359 5.359 15 C 0.109 3.891 16 C -0.152 4.152 17 C -0.155 4.155 18 C 0.028 3.972 19 O -0.230 6.230 20 C 0.514 3.486 21 F -0.146 7.146 22 F -0.115 7.115 23 F -0.146 7.146 24 C 0.015 3.985 25 C -0.054 4.054 26 N -0.087 5.087 27 C -0.153 4.153 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.239 0.761 37 H 0.161 0.839 38 H 0.158 0.842 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.915 -2.019 -21.552 21.665 hybrid contribution -0.069 0.169 1.345 1.357 sum 0.846 -1.850 -20.207 20.309 Atomic orbital electron populations 1.21740 0.95798 1.01219 1.00314 1.21451 0.95725 0.99905 0.94420 0.91792 1.19078 0.96292 0.95560 0.89777 1.21130 1.35259 1.08425 0.90898 0.92601 1.25001 0.95157 0.95058 0.99148 1.69939 1.38619 1.21067 1.23732 0.86677 0.78906 0.80111 0.82430 1.20253 1.21294 1.20265 1.21774 0.99444 0.95348 0.83688 1.45149 1.60467 1.28134 1.02176 1.17703 0.93049 0.92480 0.85909 1.20773 1.00588 0.96203 0.97596 1.21193 1.02306 1.00630 0.91329 1.18173 1.02224 0.95202 0.81616 1.86369 1.69767 1.36541 1.30331 1.19324 0.76177 0.78272 0.74843 1.93313 1.76342 1.60912 1.84009 1.93306 1.93240 1.91444 1.33470 1.93313 1.47027 1.95124 1.79088 1.14775 1.03090 0.92305 0.88366 1.25323 0.93791 0.93452 0.92792 1.81224 1.08591 1.09003 1.09881 1.20385 1.04815 1.01722 0.88330 0.93368 0.91678 0.95046 0.96256 0.96393 0.92863 0.92083 0.92007 0.76144 0.83867 0.84177 0.83868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 8.88 37.16 0.33 -1.76 16 2 C -0.10 -1.61 2.37 -90.62 -0.22 -1.82 16 3 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.52 -13.36 8.41 -34.44 -0.29 -13.65 16 6 H 0.06 1.39 7.06 -52.49 -0.37 1.02 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 9 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 13 C 0.12 1.60 4.30 -4.04 -0.02 1.58 16 14 N -0.73 -7.80 5.47 -58.63 -0.32 -8.12 16 15 C 0.22 2.14 6.65 -83.76 -0.56 1.58 16 16 C -0.13 -1.24 9.30 -39.33 -0.37 -1.60 16 17 C -0.14 -1.26 8.24 -39.51 -0.33 -1.59 16 18 C 0.07 0.76 6.49 -38.74 -0.25 0.51 16 19 O -0.31 -3.24 9.80 -19.11 -0.19 -3.43 16 20 C 0.60 5.41 3.42 101.05 0.35 5.75 16 21 F -0.16 -1.42 15.56 2.25 0.04 -1.39 16 22 F -0.13 -1.18 17.53 2.25 0.04 -1.14 16 23 F -0.16 -1.43 15.56 2.25 0.04 -1.39 16 24 C 0.02 0.20 5.75 -106.72 -0.61 -0.42 16 25 C 0.26 3.07 14.86 -22.48 -0.33 2.73 16 26 N -0.41 -5.59 18.54 41.84 0.78 -4.82 16 27 C -0.13 -1.14 9.60 -38.96 -0.37 -1.52 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 1.14 6.95 -51.93 -0.36 0.78 16 30 H 0.03 0.40 7.18 -51.93 -0.37 0.02 16 31 H 0.02 0.47 8.14 -51.92 -0.42 0.04 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.06 0.80 7.95 -51.93 -0.41 0.39 16 35 H 0.06 0.83 7.94 -51.93 -0.41 0.42 16 36 H 0.40 3.87 7.66 -40.82 -0.31 3.55 16 37 H 0.14 1.31 6.71 -52.49 -0.35 0.96 16 38 H 0.14 1.15 5.08 -52.49 -0.27 0.89 16 39 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 350.24 15.07 5.28 5.28 Total: -1.00 -28.26 350.24 -5.63 -33.88 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -4.11 Total: -1.57 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -2.89 Total: -8.18 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 1.19 Total: -37.60 kcal Atomic # 8 Polarization: -3.24 SS G_CDS: -0.19 Total: -3.43 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.11 Total: -3.92 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.26 -5.63 -33.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877499083.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.629 kcal (2) G-P(sol) polarization free energy of solvation -28.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds