Wall clock time and date at job start Tue Mar 31 2020 16:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.47054 * 2 1 4 4 C 1.52996 * 109.46925 * 119.99584 * 2 1 3 5 5 C 1.50703 * 109.47535 * 294.99977 * 4 2 1 6 6 H 1.07998 * 119.99270 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00259 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99878 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99906 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47290 * 60.00101 * 9 7 5 11 11 H 1.48502 * 109.46997 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47248 * 299.99665 * 9 7 5 13 13 C 1.53001 * 109.46884 * 239.99271 * 2 1 3 14 14 N 1.46505 * 109.46901 * 65.00351 * 13 2 1 15 15 C 1.39957 * 120.00281 * 179.97438 * 14 13 2 16 16 C 1.39098 * 119.92320 * 359.97438 * 15 14 13 17 17 C 1.38063 * 120.31740 * 179.74211 * 16 15 14 18 18 C 1.38616 * 120.17474 * 0.27789 * 17 16 15 19 19 O 1.35800 * 120.07822 * 179.97438 * 18 17 16 20 20 C 1.42902 * 116.99593 * 0.02562 * 19 18 17 21 21 F 1.39900 * 109.47237 * 59.99840 * 20 19 18 22 22 F 1.39898 * 109.47177 * 179.97438 * 20 19 18 23 23 F 1.39898 * 109.47165 * 299.99870 * 20 19 18 24 24 C 1.40122 * 119.85184 * 359.97438 * 18 17 16 25 25 C 1.43195 * 120.15804 * 179.97438 * 24 18 17 26 26 N 8.28572 * 88.59769 * 277.89159 * 2 1 3 27 27 C 1.38430 * 119.93434 * 180.25367 * 15 14 13 28 28 H 1.09000 * 109.46837 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46952 * 300.00429 * 1 2 3 30 30 H 1.08999 * 109.46968 * 60.00048 * 1 2 3 31 31 H 1.09008 * 109.46923 * 55.00159 * 4 2 1 32 32 H 1.09004 * 109.47226 * 174.99385 * 4 2 1 33 33 H 0.97008 * 119.99990 * 180.02562 * 8 7 5 34 34 H 1.08993 * 109.47424 * 305.00620 * 13 2 1 35 35 H 1.08998 * 109.46999 * 184.99839 * 13 2 1 36 36 H 0.97005 * 119.99824 * 359.97438 * 14 13 2 37 37 H 1.08002 * 119.84491 * 0.02588 * 16 15 14 38 38 H 1.07999 * 119.91105 * 180.25831 * 17 16 15 39 39 H 1.08003 * 120.08657 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6414 0.0572 2.4766 6 1 1.0807 0.9747 2.3756 7 6 1.9932 -0.4015 3.7283 8 7 2.6764 -1.5185 3.8512 9 14 1.4985 0.5630 5.2496 10 1 0.0184 0.6684 5.3092 11 1 1.9946 -0.1363 6.4621 12 1 2.0896 1.9238 5.1870 13 6 2.0400 -0.7214 -1.2492 14 7 1.6525 0.0351 -2.4424 15 6 2.0096 -0.4306 -3.7130 16 6 2.7330 -1.6117 -3.8410 17 6 3.0850 -2.0814 -5.0906 18 6 2.7244 -1.3750 -6.2275 19 8 3.0721 -1.8385 -7.4557 20 6 3.8094 -3.0618 -7.5025 21 9 3.0557 -4.0834 -6.9146 22 9 4.0818 -3.3913 -8.8346 23 9 5.0119 -2.9085 -6.8043 24 6 2.0001 -0.1816 -6.1066 25 6 1.6246 0.5537 -7.2766 26 7 1.3273 1.1373 -8.2048 27 6 1.6472 0.2882 -4.8392 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6053 -1.7198 1.2952 32 1 3.1264 -0.7995 1.2056 33 1 2.9237 -1.8414 4.7319 34 1 1.6054 -1.7199 -1.2950 35 1 3.1263 -0.7996 -1.2055 36 1 1.1483 0.8589 -2.3518 37 1 3.0168 -2.1665 -2.9589 38 1 3.6431 -3.0014 -5.1826 39 1 1.0898 1.2077 -4.7385 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877499083.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:20 Heat of formation + Delta-G solvation = -166.384735 kcal Electronic energy + Delta-G solvation = -26766.366379 eV Core-core repulsion = 22258.201267 eV Total energy + Delta-G solvation = -4508.165111 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.44900 -49.17405 -49.02936 -41.50732 -39.55766 -38.08505 -37.37948 -35.32113 -33.81345 -32.53819 -30.27668 -28.65582 -27.36173 -26.67406 -25.39931 -24.27698 -23.38764 -21.00380 -20.94778 -20.37962 -20.16321 -19.24963 -18.49942 -17.56718 -17.26414 -16.97360 -16.48283 -16.40500 -15.95839 -15.87663 -15.63894 -15.61109 -15.46160 -15.30466 -15.18579 -14.91476 -14.64067 -14.52403 -14.39302 -14.31948 -14.16415 -14.03423 -13.79867 -13.44333 -13.21742 -13.07997 -12.74205 -12.59888 -12.34155 -12.19902 -11.94003 -11.58150 -11.10085 -10.98398 -10.78279 -10.48744 -10.17909 -8.30884 -8.14383 -6.22158 -0.35283 0.26117 0.43441 1.44111 1.44774 1.51648 1.52406 1.79806 1.88878 2.37237 2.46996 2.69681 2.74440 2.82160 3.00034 3.20395 3.65094 3.70780 4.07854 4.12407 4.23157 4.27695 4.41994 4.52909 4.66117 4.85615 4.91514 5.01489 5.05859 5.13893 5.22596 5.30628 5.39488 5.54736 5.56752 5.60441 5.85019 5.93143 6.24082 6.34795 6.36601 6.85410 6.94754 7.46166 8.97046 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.020397 B = 0.002251 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.395644 B =12433.597908 C =13500.747656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.086 4.086 3 H 0.064 0.936 4 C 0.032 3.968 5 C -0.528 4.528 6 H 0.062 0.938 7 C 0.000 4.000 8 N -0.933 5.933 9 Si 0.954 3.046 10 H -0.269 1.269 11 H -0.289 1.289 12 H -0.269 1.269 13 C 0.136 3.864 14 N -0.729 5.729 15 C 0.209 3.791 16 C -0.128 4.128 17 C -0.135 4.135 18 C 0.073 3.927 19 O -0.322 6.322 20 C 0.609 3.391 21 F -0.161 7.161 22 F -0.133 7.133 23 F -0.161 7.161 24 C 0.011 3.989 25 C 0.281 3.719 26 N -0.449 5.449 27 C -0.109 4.109 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.068 0.932 31 H -0.004 1.004 32 H -0.006 1.006 33 H 0.261 0.739 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.410 0.590 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.650 -1.925 -20.777 20.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.105 4.105 3 H 0.083 0.917 4 C -0.005 4.005 5 C -0.566 4.566 6 H 0.080 0.920 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.779 3.221 10 H -0.194 1.194 11 H -0.214 1.214 12 H -0.194 1.194 13 C 0.011 3.989 14 N -0.358 5.358 15 C 0.103 3.897 16 C -0.151 4.151 17 C -0.154 4.154 18 C 0.026 3.974 19 O -0.242 6.242 20 C 0.518 3.482 21 F -0.143 7.143 22 F -0.114 7.114 23 F -0.143 7.143 24 C 0.006 3.994 25 C -0.034 4.034 26 N -0.125 5.125 27 C -0.134 4.134 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.014 0.986 32 H 0.012 0.988 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.247 0.753 37 H 0.165 0.835 38 H 0.168 0.832 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 0.302 -1.203 -22.085 22.120 hybrid contribution 0.152 -0.126 1.459 1.472 sum 0.454 -1.329 -20.626 20.674 Atomic orbital electron populations 1.21667 0.94693 1.01104 1.01041 1.21198 0.96511 0.99365 0.93377 0.91711 1.18974 0.94692 0.94794 0.92052 1.21620 1.34325 1.08592 0.92073 0.92023 1.25855 0.95415 0.96023 1.02430 1.70069 1.40262 1.22808 1.24248 0.85672 0.78863 0.78872 0.78675 1.19382 1.21444 1.19420 1.21383 0.99125 0.95118 0.83233 1.44839 1.61077 1.28308 1.01529 1.17704 0.93569 0.92772 0.85659 1.20903 1.00174 0.96186 0.97861 1.21260 1.02297 1.00914 0.90908 1.18322 1.02040 0.95252 0.81782 1.86357 1.69994 1.37163 1.30647 1.19226 0.76097 0.77947 0.74881 1.93319 1.76312 1.60714 1.83959 1.93309 1.93221 1.91392 1.33497 1.93319 1.46862 1.95101 1.79032 1.14817 1.03925 0.92452 0.88213 1.25485 0.92747 0.92651 0.92540 1.81242 1.10040 1.10304 1.10932 1.20520 1.03607 1.01919 0.87345 0.93901 0.93857 0.91351 0.98586 0.98792 0.93031 0.91926 0.92306 0.75252 0.83484 0.83224 0.81735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.79 8.88 71.98 0.64 -3.15 16 2 C -0.09 -2.78 2.37 -10.79 -0.03 -2.80 16 3 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 4 C 0.03 1.49 4.45 29.85 0.13 1.63 16 5 C -0.53 -27.29 8.41 25.60 0.22 -27.07 16 6 H 0.06 3.04 7.06 -2.91 -0.02 3.02 16 7 C 0.00 0.02 5.46 84.65 0.46 0.48 16 8 N -0.93 -53.99 13.29 21.45 0.28 -53.70 16 9 Si 0.95 42.14 29.54 68.60 2.03 44.16 16 10 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 13 C 0.14 3.37 4.30 86.38 0.37 3.74 16 14 N -0.73 -13.54 5.47 -339.42 -1.86 -15.39 16 15 C 0.21 3.58 6.65 38.10 0.25 3.84 16 16 C -0.13 -2.20 9.30 22.43 0.21 -1.99 16 17 C -0.13 -2.26 8.24 22.32 0.18 -2.07 16 18 C 0.07 1.36 6.49 22.82 0.15 1.50 16 19 O -0.32 -6.30 9.80 -91.31 -0.89 -7.20 16 20 C 0.61 10.11 3.42 113.37 0.39 10.50 16 21 F -0.16 -2.57 15.56 44.97 0.70 -1.87 16 22 F -0.13 -2.22 17.53 44.97 0.79 -1.43 16 23 F -0.16 -2.59 15.56 44.97 0.70 -1.89 16 24 C 0.01 0.19 5.75 -21.22 -0.12 0.07 16 25 C 0.28 6.18 14.86 88.33 1.31 7.49 16 26 N -0.45 -11.83 18.54 19.00 0.35 -11.48 16 27 C -0.11 -1.65 9.60 22.67 0.22 -1.43 16 28 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.04 1.46 6.95 -2.39 -0.02 1.44 16 30 H 0.07 1.52 7.18 -2.39 -0.02 1.50 16 31 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 32 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 33 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 34 H 0.06 1.55 7.95 -2.39 -0.02 1.53 16 35 H 0.06 1.51 7.94 -2.39 -0.02 1.49 16 36 H 0.41 6.49 7.66 -92.70 -0.71 5.78 16 37 H 0.15 2.43 6.71 -2.91 -0.02 2.41 16 38 H 0.15 2.19 5.08 -2.91 -0.01 2.18 16 39 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -60.94 350.24 6.90 -54.04 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: 0.41 Total: 4.03 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 4.39 Total: -9.27 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -1.22 Total: -80.58 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.89 Total: -7.20 kcal Atomic # 9 Polarization: -7.38 SS G_CDS: 2.19 Total: -5.19 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -60.94 6.90 -54.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877499083.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.344 kcal (2) G-P(sol) polarization free energy of solvation -60.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds