Wall clock time and date at job start Tue Mar 31 2020 15:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47277 * 2 1 4 4 H 1.09001 * 109.46900 * 56.88180 * 3 2 1 5 5 N 1.46898 * 109.46808 * 296.88649 * 3 2 1 6 6 C 1.46905 * 110.99854 * 154.17763 * 5 3 2 7 7 C 1.53047 * 109.45776 * 273.87694 * 6 5 3 8 8 C 1.53185 * 109.31422 * 178.61197 * 7 6 5 9 9 N 1.46932 * 108.77573 * 54.63296 * 8 7 6 10 10 C 1.36936 * 120.63016 * 126.36645 * 9 8 7 11 11 H 1.07994 * 120.00260 * 210.17924 * 10 9 8 12 12 C 1.38817 * 119.99821 * 30.18124 * 10 9 8 13 13 N 1.31616 * 119.99960 * 18.47395 * 12 10 9 14 14 Si 1.86802 * 119.99780 * 198.46825 * 12 10 9 15 15 H 1.48497 * 109.47245 * 94.96718 * 14 12 10 16 16 H 1.48497 * 109.46959 * 214.96956 * 14 12 10 17 17 H 1.48495 * 109.47138 * 334.96623 * 14 12 10 18 18 C 1.46925 * 118.73896 * 306.39227 * 9 8 7 19 19 C 1.53034 * 109.46456 * 153.80942 * 6 5 3 20 20 C 1.50696 * 109.47004 * 176.88445 * 3 2 1 21 21 S 1.75882 * 125.20204 * 74.94829 * 20 3 2 22 22 C 1.75876 * 90.98322 * 180.02562 * 21 20 3 23 23 C 1.33404 * 109.60514 * 0.02562 * 22 21 20 24 24 C 1.33440 * 125.20014 * 255.00244 * 20 3 2 25 25 Cl 1.73599 * 122.55176 * 0.22015 * 24 20 3 26 26 H 1.09004 * 109.47106 * 185.24849 * 1 2 3 27 27 H 1.09000 * 109.46654 * 305.24588 * 1 2 3 28 28 H 1.09000 * 109.47062 * 65.24245 * 1 2 3 29 29 H 1.09004 * 109.46468 * 240.00231 * 2 1 3 30 30 H 1.08999 * 109.46753 * 120.00430 * 2 1 3 31 31 H 1.00897 * 111.00235 * 278.12124 * 5 3 2 32 32 H 1.08999 * 109.46049 * 33.83077 * 6 5 3 33 33 H 1.09000 * 109.49425 * 298.56993 * 7 6 5 34 34 H 1.08998 * 109.49438 * 58.66251 * 7 6 5 35 35 H 1.08997 * 109.58988 * 294.84735 * 8 7 6 36 36 H 1.09001 * 109.70467 * 174.48873 * 8 7 6 37 37 H 0.97003 * 119.99670 * 180.02562 * 13 12 10 38 38 H 1.08998 * 109.58637 * 293.82002 * 18 9 8 39 39 H 1.08999 * 109.70567 * 173.45952 * 18 9 8 40 40 H 1.08997 * 109.49611 * 301.33590 * 19 6 5 41 41 H 1.09007 * 109.49987 * 61.39448 * 19 6 5 42 42 H 1.07999 * 125.20006 * 179.97438 * 22 21 20 43 43 H 1.08003 * 122.54256 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6318 1.9722 0.8607 5 7 1.6128 2.1128 -1.2353 6 6 1.5207 3.5660 -1.0408 7 6 0.1408 3.9191 -0.4808 8 6 0.0607 5.4308 -0.2468 9 7 0.3987 6.1218 -1.4987 10 6 -0.4486 7.0570 -2.0302 11 1 -0.4886 7.2038 -3.0994 12 6 -1.2563 7.8163 -1.1947 13 7 -0.9698 7.9147 0.0861 14 14 -2.7496 8.6986 -1.8883 15 1 -3.9558 7.8531 -1.7002 16 1 -2.9349 9.9902 -1.1794 17 1 -2.5451 8.9540 -3.3368 18 6 1.6630 5.7898 -2.1696 19 6 1.7252 4.2740 -2.3821 20 6 3.5450 1.4431 0.0772 21 16 4.6285 1.0452 -1.2499 22 6 6.0321 1.3192 -0.2261 23 6 5.6322 1.6760 0.9955 24 6 4.2594 1.7446 1.1632 25 17 3.5236 2.1828 2.6733 26 1 -0.3633 -1.0234 0.0940 27 1 -0.3632 0.5931 0.8393 28 1 -0.3633 0.4304 -0.9332 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 2.2310 1.8890 -2.0006 32 1 2.2903 3.8880 -0.3393 33 1 -0.6282 3.6198 -1.1930 34 1 -0.0134 3.3962 0.4630 35 1 0.7676 5.7182 0.5315 36 1 -0.9497 5.7023 0.0590 37 1 -1.5345 8.4450 0.6700 38 1 2.5006 6.1064 -1.5481 39 1 1.7114 6.2961 -3.1337 40 1 2.6985 4.0036 -2.7915 41 1 0.9415 3.9709 -3.0766 42 1 7.0606 1.2137 -0.5384 43 1 6.3266 1.8957 1.7931 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883187566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:52 Heat of formation + Delta-G solvation = 37.524878 kcal Electronic energy + Delta-G solvation = -24262.206943 eV Core-core repulsion = 20880.893873 eV Total energy + Delta-G solvation = -3381.313071 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.107 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -39.10315 -37.83992 -36.24656 -35.87690 -33.34748 -31.45304 -30.23784 -29.83944 -28.62213 -25.77082 -24.34327 -23.48332 -22.31915 -21.45518 -20.79091 -19.67880 -19.00782 -17.57727 -16.69721 -16.30873 -15.30696 -14.90514 -14.57474 -14.33316 -13.91703 -13.79715 -13.64126 -13.47848 -13.42132 -13.13825 -12.89800 -12.46881 -12.14665 -11.97208 -11.71432 -11.50310 -11.43277 -11.31335 -11.10118 -10.97992 -10.86534 -10.80357 -10.72018 -10.69351 -10.17980 -10.16718 -9.89503 -9.52663 -9.46864 -8.92271 -8.59249 -8.45281 -8.25810 -6.60394 -5.75169 -3.18129 0.63680 1.09118 1.54250 2.28017 2.45278 3.40806 3.48008 3.49278 4.26601 4.39951 4.53671 4.82211 5.08314 5.10388 5.19222 5.38644 5.45339 5.48292 5.49743 5.59063 5.70862 5.73509 5.80310 5.89689 5.92342 5.95885 6.02406 6.16756 6.20129 6.37273 6.44724 6.50877 6.61559 6.68669 6.78922 6.82107 7.03152 7.31454 7.40490 7.54724 7.69658 7.85271 8.50582 9.25850 9.89232 10.47970 11.33456 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.016519 B = 0.003471 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.646396 B = 8064.804434 C = 8078.806476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 C 0.152 3.848 4 H 0.103 0.897 5 N -0.669 5.669 6 C 0.096 3.904 7 C -0.122 4.122 8 C 0.173 3.827 9 N -0.589 5.589 10 C -0.254 4.254 11 H 0.064 0.936 12 C 0.006 3.994 13 N -0.900 5.900 14 Si 0.900 3.100 15 H -0.287 1.287 16 H -0.292 1.292 17 H -0.278 1.278 18 C 0.149 3.851 19 C -0.133 4.133 20 C -0.193 4.193 21 S 0.141 5.859 22 C -0.210 4.210 23 C -0.126 4.126 24 C -0.052 4.052 25 Cl -0.046 7.046 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.332 0.668 32 H 0.038 0.962 33 H 0.061 0.939 34 H 0.044 0.956 35 H 0.015 0.985 36 H 0.081 0.919 37 H 0.253 0.747 38 H 0.014 0.986 39 H 0.054 0.946 40 H 0.045 0.955 41 H 0.067 0.933 42 H 0.171 0.829 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.359 -17.809 0.924 21.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.142 4.142 3 C 0.039 3.961 4 H 0.121 0.879 5 N -0.299 5.299 6 C -0.013 4.013 7 C -0.162 4.162 8 C 0.047 3.953 9 N -0.312 5.312 10 C -0.384 4.384 11 H 0.082 0.918 12 C -0.193 4.193 13 N -0.544 5.544 14 Si 0.729 3.271 15 H -0.215 1.215 16 H -0.218 1.218 17 H -0.204 1.204 18 C 0.022 3.978 19 C -0.173 4.173 20 C -0.314 4.314 21 S 0.403 5.597 22 C -0.346 4.346 23 C -0.157 4.157 24 C -0.091 4.091 25 Cl -0.017 7.017 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.151 0.849 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.033 0.967 36 H 0.099 0.901 37 H 0.063 0.937 38 H 0.032 0.968 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.189 0.811 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 11.338 -18.178 -0.229 21.425 hybrid contribution 0.597 1.218 1.460 1.993 sum 11.935 -16.960 1.231 20.775 Atomic orbital electron populations 1.21629 0.94414 1.00563 1.03229 1.21498 0.97236 0.93961 1.01492 1.20477 0.83200 0.96773 0.95623 0.87930 1.60884 1.54272 1.10290 1.04493 1.21519 0.98164 0.84457 0.97132 1.22182 0.95259 0.99593 0.99141 1.20722 1.01023 0.86137 0.87415 1.44014 1.17532 1.44134 1.25541 1.19167 1.15825 1.12316 0.91093 0.91839 1.25066 1.00811 0.97495 0.95977 1.70066 1.37820 1.42344 1.04127 0.86317 0.83523 0.78787 0.78425 1.21450 1.21848 1.20363 1.20834 0.89272 0.91197 0.96493 1.22220 0.99877 0.98931 0.96262 1.25724 1.02321 1.07114 0.96215 1.84283 0.95444 1.66955 1.12969 1.25514 1.02744 1.09265 0.97070 1.19932 0.93885 1.03480 0.98369 1.19781 0.92732 1.07491 0.89124 1.98376 1.82381 1.91443 1.29540 0.93509 0.92925 0.91095 0.92047 0.92025 0.84918 0.94369 0.92022 0.93722 0.96672 0.90054 0.93711 0.96788 0.92701 0.93615 0.91462 0.81108 0.83428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.72 37.16 0.36 -1.24 16 2 C -0.10 -1.15 5.61 -26.73 -0.15 -1.30 16 3 C 0.15 1.94 2.12 -68.87 -0.15 1.80 16 4 H 0.10 1.49 6.13 -51.93 -0.32 1.17 16 5 N -0.67 -9.39 5.53 -100.91 -0.56 -9.95 16 6 C 0.10 1.64 2.26 -67.67 -0.15 1.49 16 7 C -0.12 -2.39 5.58 -26.61 -0.15 -2.54 16 8 C 0.17 4.20 5.30 -3.71 -0.02 4.18 16 9 N -0.59 -14.96 2.98 -172.32 -0.51 -15.47 16 10 C -0.25 -7.07 9.55 -15.06 -0.14 -7.21 16 11 H 0.06 1.74 7.89 -52.49 -0.41 1.33 16 12 C 0.01 0.16 4.85 -17.43 -0.08 0.07 16 13 N -0.90 -26.49 11.45 55.49 0.64 -25.85 16 14 Si 0.90 21.91 29.59 -169.99 -5.03 16.88 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 18 C 0.15 3.19 6.51 -3.71 -0.02 3.16 16 19 C -0.13 -2.34 5.35 -26.61 -0.14 -2.48 16 20 C -0.19 -2.34 5.10 -35.99 -0.18 -2.52 16 21 S 0.14 1.41 22.18 -107.50 -2.38 -0.98 16 22 C -0.21 -1.91 11.23 29.04 0.33 -1.58 16 23 C -0.13 -1.30 10.07 -41.18 -0.41 -1.71 16 24 C -0.05 -0.63 6.27 -41.17 -0.26 -0.89 16 25 Cl -0.05 -0.58 27.93 -51.86 -1.45 -2.03 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.89 7.85 -51.93 -0.41 0.48 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.33 4.32 7.01 -39.29 -0.28 4.05 16 32 H 0.04 0.71 7.65 -51.93 -0.40 0.31 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.04 0.82 7.51 -51.93 -0.39 0.43 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 2.20 6.27 -51.93 -0.33 1.88 16 37 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.05 1.15 7.94 -51.93 -0.41 0.73 16 40 H 0.05 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.07 1.23 8.14 -51.92 -0.42 0.80 16 42 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.15 1.27 8.06 -52.48 -0.42 0.84 16 LS Contribution 366.42 15.07 5.52 5.52 Total: -1.00 -29.35 366.42 -11.68 -41.03 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -6.72 Total: 1.61 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -1.18 Total: -10.76 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -0.44 Total: -51.27 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.38 Total: -0.98 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.45 Total: -2.03 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.35 -11.68 -41.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883187566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.553 kcal (2) G-P(sol) polarization free energy of solvation -29.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds